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	Fusion Gene Summary
	Fusion Gene Sample Information
	Fusion ORF Analysis
	Fusion Amino Acid Sequences
	Fusion Protein Functional Features
	Fusion Protein Structure
	pLDDT scores
	Ramachandran Plot of Fusion Protein Structure
	Fusion Protein-Protein Interaction
	Related drugs with this fusion protein
	Related disease with this fusion protein

Fusion Protein:SS18-SSX2B

Fusion Protein Summary

Fusion gene summary

Fusion partner gene information	Fusion gene name: SS18-SSX2B
	FusionPDB ID: 86684
	FusionGDB2.0 ID: 86684
		Hgene	Tgene
	Gene symbol	SS18	SSX2B
	Gene ID	6760	727837
	Gene name	SS18 subunit of BAF chromatin remodeling complex	SSX family member 2B
	Synonyms	SSXT\|SYT	CT5.2\|CT5.2b\|HOM-MEL-40\|SSX
	Cytomap	18q11.2	Xp11.22
	Type of gene	protein-coding	protein-coding
	Description	protein SSXTSS18, nBAF chromatin remodeling complex subunitsynovial sarcoma translocated to X chromosome proteinsynovial sarcoma translocation, chromosome 18synovial sarcoma, translocated to X chromosome	protein SSX2cancer/testis antigen 5.2cancer/testis antigen family 5, member 2bsynovial sarcoma, X breakpoint 2Btumor antigen HOM-MEL-40
	Modification date	20200329	20200313
	UniProtAcc	O75177	.
Ensembl transtripts involved in fusion gene	ENST ids	ENST00000269137, ENST00000415083, ENST00000539849, ENST00000542420, ENST00000542743, ENST00000545952, ENST00000585241,	ENST00000288839, ENST00000276049, ENST00000375515,
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)	* DoF score	24 X 33 X 8=6336	2 X 3 X 2=12
	# samples	38	3
	** MAII score	log2(38/6336*10)=-4.05950101174866 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(3/12*10)=1.32192809488736 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0
Context (manual curation of fusion genes in FusionPDB)	PubMed: SS18 [Title/Abstract] AND SSX2B [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)	SS18(23612363)-SSX2B(52786929), # samples:2
Anticipated loss of major functional domain due to fusion event.	SS18-SSX2B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SS18-SSX2B seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF. SS18-SSX2B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SS18-SSX2B seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF. SS18-SSX2B seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	SS18	GO:0045944	positive regulation of transcription by RNA polymerase II	15919756

Fusion gene breakpoints across SS18 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across SSX2B (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

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Fusion Gene Sample Information

Fusion gene information from FusionGDB2.0.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	AB012575	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+
ChiTaRS5.0	N/A	AB300357	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+
ChiTaRS5.0	N/A	AY138492	SS18	chr18	23608220	-	SSX2B	chrX	52786697	+

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Fusion ORF Analysis

Fusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	Seq length (transcript)	BP loci (transcript)	Predicted start (transcript)	Predicted stop (transcript)	Seq length (amino acids)
ENST00000415083	SS18	chr18	23612363	-	ENST00000375515	SSX2B	chrX	52786929	+	2154	1286	56	1522	488
ENST00000415083	SS18	chr18	23612363	-	ENST00000276049	SSX2B	chrX	52786929	+	2300	1286	56	1627	523
ENST00000269137	SS18	chr18	23612363	-	ENST00000375515	SSX2B	chrX	52786929	+	2337	1469	161	1705	514
ENST00000269137	SS18	chr18	23612363	-	ENST00000276049	SSX2B	chrX	52786929	+	2483	1469	161	1810	549
ENST00000545952	SS18	chr18	23612363	-	ENST00000375515	SSX2B	chrX	52786929	+	2152	1284	303	1520	405
ENST00000545952	SS18	chr18	23612363	-	ENST00000276049	SSX2B	chrX	52786929	+	2298	1284	303	1625	440

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	No-coding score	Coding score
ENST00000415083	ENST00000375515	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.003618237	0.99638176
ENST00000415083	ENST00000276049	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.007020001	0.99298006
ENST00000269137	ENST00000375515	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.003744085	0.9962559
ENST00000269137	ENST00000276049	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.006813598	0.99318635
ENST00000545952	ENST00000375515	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.001583785	0.9984162
ENST00000545952	ENST00000276049	SS18	chr18	23612363	-	SSX2B	chrX	52786929	+	0.003139105	0.99686086

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Fusion Amino Acid Sequences

For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.

>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>86684_86684_1_SS18-SSX2B_SS18_chr18_23612363_ENST00000269137_SSX2B_chrX_52786929_ENST00000276049_length(amino acids)=549AA_BP=436
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE
EVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGP

--------------------------------------------------------------

>86684_86684_2_SS18-SSX2B_SS18_chr18_23612363_ENST00000269137_SSX2B_chrX_52786929_ENST00000375515_length(amino acids)=514AA_BP=436
MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ
CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM
NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ
QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD
AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE

--------------------------------------------------------------

>86684_86684_3_SS18-SSX2B_SS18_chr18_23612363_ENST00000415083_SSX2B_chrX_52786929_ENST00000276049_length(amino acids)=523AA_BP=410
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------

>86684_86684_4_SS18-SSX2B_SS18_chr18_23612363_ENST00000415083_SSX2B_chrX_52786929_ENST00000375515_length(amino acids)=488AA_BP=410
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGM
NQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDY
YGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEK

--------------------------------------------------------------

>86684_86684_5_SS18-SSX2B_SS18_chr18_23612363_ENST00000545952_SSX2B_chrX_52786929_ENST00000276049_length(amino acids)=440AA_BP=327
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

--------------------------------------------------------------

>86684_86684_6_SS18-SSX2B_SS18_chr18_23612363_ENST00000545952_SSX2B_chrX_52786929_ENST00000375515_length(amino acids)=405AA_BP=327
MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQ
LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM
GMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYP
GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPG

--------------------------------------------------------------

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Fusion Protein Functional Features

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr18:23612363/chrX:52786929)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
SS18 O75177	.
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.	FUNCTION: Might normally function as a transcriptional repressor. EWS-fusion-proteins (EFPS) may play a role in the tumorigenic process. They may disturb gene expression by mimicking, or interfering with the normal function of CTD-POLII within the transcription initiation complex. They may also contribute to an aberrant activation of the fusion protein target genes.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page
* Minus value of BPloci means that the break pointn is located before the CDS.

- Retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

95_99

379.0

388.0

Compositional bias

Note=Poly-Pro

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

95_99

410.0

419.0

Compositional bias

Note=Poly-Pro

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

374_377

379.0

388.0

Motif

SH2-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

50_53

379.0

388.0

Motif

SH2-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

374_377

410.0

419.0

Motif

SH2-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

392_401

410.0

419.0

Motif

SH3-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

50_53

410.0

419.0

Motif

SH2-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

2_186

379.0

388.0

Region

Note=Transcriptional activation

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

344_369

379.0

388.0

Region

Note=2 X 13 AA imperfect tandem repeats

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

2_186

410.0

419.0

Region

Note=Transcriptional activation

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

344_369

410.0

419.0

Region

Note=2 X 13 AA imperfect tandem repeats

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

344_356

379.0

388.0

Repeat

Note=1

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

357_369

379.0

388.0

Repeat

Note=2

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

344_356

410.0

419.0

Repeat

Note=1

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

357_369

410.0

419.0

Repeat

Note=2

- Not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

175_418

379.0

388.0

Compositional bias

Note=Gln-rich

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

175_418

410.0

419.0

Compositional bias

Note=Gln-rich

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

392_401

379.0

388.0

Motif

SH3-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000269137

413_416

379.0

388.0

Motif

SH2-binding

Hgene

SS18

chr18:23612363

chrX:52786929

ENST00000415083

413_416

410.0

419.0

Motif

SH2-binding

Tgene

SSX2B

chr18:23612363

chrX:52786929

ENST00000276049

20_83

110.0

416.3333333333333

Domain

KRAB-related

Tgene

SSX2B

chr18:23612363

chrX:52786929

ENST00000375515

20_83

110.0

372.0

Domain

KRAB-related

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Fusion Protein Structures

PDB and CIF files of the predicted fusion proteins
* Here we show the 3D structure of the fusion proteins using Mol*. AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Model confidence is shown from the pLDDT values per residue. pLDDT corresponds to the model’s prediction of its score on the local Distance Difference Test. It is a measure of local accuracy (from AlphfaFold website). To color code individual residues, we transformed individual PDB files into CIF format.

Fusion protein PDB link (fusion AA seq ID in FusionPDB)	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand	AA seq	Len(AA seq)
PDB file >>>1177_SS18_23612363_SSX2B_52786929_1177_SS18_23612363_SSX2B_52786929_ranked_0.pdb	SS18	23612363	23612363	ENST00000276049	SSX2B	chrX	52786929	+	MARVPPSGLPRRPSAWPRSIPPPRIPEVVQPERPASLPQFAVHPERSGLADSGDGGNMSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQ CIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQM NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQ QYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQD AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQIMPKKPAEEGNDSE EVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGP	549

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pLDDT score distribution

pLDDT score distribution of the predicted wild-type structures of two partner proteins from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.

SS18_pLDDT.png

SSX2B_pLDDT.png

pLDDT score distribution of the predicted fusion protein structures from AlphaFold2
* AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.

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Ramachandran Plot of Fusion Protein Structure

Ramachandran plot of the torsional angles - phi (φ)and psi (ψ) - of the residues (amino acids) contained in this fusion protein peptide.

Fusion AA seq ID in FusionPDB and their Ramachandran plots

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Fusion Protein-Protein Interaction

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)

Gene

PPI interactors

SS18

SMARCA2, SMARCB1, EP300, MLLT10, GRB2, Bcl7b, SMARCD1, RBM14, YWHAG, ELAVL1, CUL3, CST11, ATF2, TLE1, SMARCA5, HDAC1, HDAC2, EED, SUZ12, EZH2, SS18, NFKBID, DPF3, DPF2, SMARCE1, ARID1B, ARID1A, PHF10, SMARCC2, SMARCC1, GLTSCR1, SMARCD3, SMARCD2, SMARCA4, ARID2, DPF1, ACTL6A, ACTL6B, BCL7A, BCL7C, BCL7B, BRD9, CDKN1A, NEFM, RAB5C, SYNCRIP, Wash, FUS, DDIT3, FLI1, nsp13ab, BRD3, NR3C1, SS18L1, BRD7, PBRM1, ACTC1, STK11IP, DDX58, UBQLN2, PTPRR, T, ELF5, ERG, ETV4, FOS, GATA2, GCM1, HNF4A, IRF1, IRF4, KLF3, KLF5, LHX2, MYOD1, PAX7, SOX17, SOX2, SP7,

Protein-protein interactors based on sequence similarity (STRING)

Gene	STRING network
SS18
SSX2B

- Retained interactions in fusion protein (protein functional feature from UniProt).

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost interactions due to fusion (protein functional feature from UniProt).

Partner	Gene	Hbp	Tbp	ENST	Strand	BPexon	TotalExon	Protein feature loci	*BPloci	TotalLen	Interaction lost with
Tgene	SSX2B	chr18:23612363	chrX:52786929	ENST00000276049		4	9	25_80	110.0	416.3333333333333	RAB3IP
Tgene	SSX2B	chr18:23612363	chrX:52786929	ENST00000375515		4	8	25_80	110.0	372.0	RAB3IP
Tgene	SSX2B	chr18:23612363	chrX:52786929	ENST00000276049		4	9	1_80	110.0	416.3333333333333	SSX2IP
Tgene	SSX2B	chr18:23612363	chrX:52786929	ENST00000375515		4	8	1_80	110.0	372.0	SSX2IP

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Related Drugs to SS18-SSX2B

Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Drug

Source

PMID

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Related Diseases to SS18-SSX2B

Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)

Hgene

Tgene

Disease

Source

PMID

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner	Gene	Disease ID	Disease name	# pubmeds	Source
Hgene	SS18	C0039101	synovial sarcoma	2	CTD_human;ORPHANET