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Center for Computational Systems Medicine level1
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Fusion Gene Summary

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Fusion Gene Sample Information

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Fusion ORF Analysis

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Fusion Amino Acid Sequences

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Fusion Protein Functional Features

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Fusion Protein-Protein Interaction

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Related drugs with this fusion protein

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Related disease with this fusion protein

Fusion Protein:XXYLT1-ETV5

Fusion Protein Summary

check button Fusion gene summary
Fusion partner gene informationFusion gene name: XXYLT1-ETV5
FusionPDB ID: 99835
FusionGDB2.0 ID: 99835
HgeneTgene
Gene symbol

XXYLT1

ETV5

Gene ID

152002

2119

Gene namexyloside xylosyltransferase 1ETS variant transcription factor 5
SynonymsC3orf21ERM
Cytomap

3q29

3q27.2

Type of geneprotein-codingprotein-coding
Descriptionxyloside xylosyltransferase 1UDP-xylose:alpha-xyloside alpha-1,3-xylosyltransferaseETS translocation variant 5ETS variant 5ets-related moleculeets-related protein ERM
Modification date2020031320200313
UniProtAcc

Q8NBI6

P41161

Ensembl transtripts involved in fusion geneENST idsENST00000310380, ENST00000355729, 
ENST00000429994, ENST00000437101, 
ENST00000356740, ENST00000460582, 
ENST00000480706, ENST00000306376, 
ENST00000434744, ENST00000537818, 
Fusion gene scores for assessment (based on all fusion genes of FusionGDB 2.0)* DoF score10 X 6 X 7=42017 X 12 X 11=2244
# samples 1122
** MAII scorelog2(11/420*10)=-1.93288580414146
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(22/2244*10)=-3.35049724708413
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context (manual curation of fusion genes in FusionPDB)

PubMed: XXYLT1 [Title/Abstract] AND ETV5 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpoint (based on all fusion genes of FusionGDB 2.0)XXYLT1(194877178)-ETV5(185783861), # samples:2
Anticipated loss of major functional domain due to fusion event.XXYLT1-ETV5 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
XXYLT1-ETV5 seems lost the major protein functional domain in Hgene partner, which is a CGC by not retaining the major functional domain in the partially deleted in-frame ORF.
XXYLT1-ETV5 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
XXYLT1-ETV5 seems lost the major protein functional domain in Hgene partner, which is a essential gene by not retaining the major functional domain in the partially deleted in-frame ORF.
XXYLT1-ETV5 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
XXYLT1-ETV5 seems lost the major protein functional domain in Tgene partner, which is a transcription factor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneXXYLT1

GO:0016266

O-glycan processing

8982869|22117070

TgeneETV5

GO:0034599

cellular response to oxidative stress

19443906


check buttonFusion gene breakpoints across XXYLT1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ETV5 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


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Fusion Gene Sample Information

check buttonFusion gene information from FusionGDB2.0.
check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-VT-A80G-01AXXYLT1chr3

194877178

-ETV5chr3

185783861

-


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Fusion ORF Analysis


check buttonFusion information from ORFfinder translation from full-length transcript sequence from FusionPDB.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000310380XXYLT1chr3194877178-ENST00000306376ETV5chr3185783861-41088941091776555
ENST00000310380XXYLT1chr3194877178-ENST00000434744ETV5chr3185783861-21648941091776555
ENST00000310380XXYLT1chr3194877178-ENST00000537818ETV5chr3185783861-19418941091776555
ENST00000429994XXYLT1chr3194877178-ENST00000306376ETV5chr3185783861-3644430681312414
ENST00000429994XXYLT1chr3194877178-ENST00000434744ETV5chr3185783861-1700430681312414
ENST00000429994XXYLT1chr3194877178-ENST00000537818ETV5chr3185783861-1477430681312414
ENST00000355729XXYLT1chr3194877178-ENST00000306376ETV5chr3185783861-339017601058352
ENST00000355729XXYLT1chr3194877178-ENST00000434744ETV5chr3185783861-144617601058352
ENST00000355729XXYLT1chr3194877178-ENST00000537818ETV5chr3185783861-122317601058352

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000310380ENST00000306376XXYLT1chr3194877178-ETV5chr3185783861-0.0009680640.9990319
ENST00000310380ENST00000434744XXYLT1chr3194877178-ETV5chr3185783861-0.0089653640.9910347
ENST00000310380ENST00000537818XXYLT1chr3194877178-ETV5chr3185783861-0.0117894770.98821056
ENST00000429994ENST00000306376XXYLT1chr3194877178-ETV5chr3185783861-0.0003563970.99964356
ENST00000429994ENST00000434744XXYLT1chr3194877178-ETV5chr3185783861-0.0022934870.99770653
ENST00000429994ENST00000537818XXYLT1chr3194877178-ETV5chr3185783861-0.0035912060.99640876
ENST00000355729ENST00000306376XXYLT1chr3194877178-ETV5chr3185783861-0.0002045360.9997955
ENST00000355729ENST00000434744XXYLT1chr3194877178-ETV5chr3185783861-0.001528470.99847156
ENST00000355729ENST00000537818XXYLT1chr3194877178-ETV5chr3185783861-0.0027224810.99727756

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Fusion Amino Acid Sequences


check button For individual full-length fusion transcript sequence from FusionPDB, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>FusionGDB ID_FusionGDB isoform ID_FGname_Hgene_Hchr_Hbp_Henst_Tgene_Tchr_Tbp_Tenst_length(fusion AA) seq_BP

>99835_99835_1_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000310380_ETV5_chr3_185783861_ENST00000306376_length(amino acids)=555AA_BP=260
MGLLRGGLPCARAMARLGAVRSHYCALLLAAALAVCAFYYLGSGRETFSSATKRLKEARAGAPAAPSPPALELARGSVAPAPGAKAKSLE
GGGAGPVDYHLLMMFTKAEHNAALQAKARVALRSLLRLAKFEAHEVLNLHFVSEEASREVAKGLLRELLPPAAGFKCKVIFHDVAVLTDK
LFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEP
CHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRG
GYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVA
RRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECHLSEEDTLPLTHFEDSPAYLLD

--------------------------------------------------------------

>99835_99835_2_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000310380_ETV5_chr3_185783861_ENST00000434744_length(amino acids)=555AA_BP=260
MGLLRGGLPCARAMARLGAVRSHYCALLLAAALAVCAFYYLGSGRETFSSATKRLKEARAGAPAAPSPPALELARGSVAPAPGAKAKSLE
GGGAGPVDYHLLMMFTKAEHNAALQAKARVALRSLLRLAKFEAHEVLNLHFVSEEASREVAKGLLRELLPPAAGFKCKVIFHDVAVLTDK
LFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEP
CHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRG
GYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVA
RRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECHLSEEDTLPLTHFEDSPAYLLD

--------------------------------------------------------------

>99835_99835_3_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000310380_ETV5_chr3_185783861_ENST00000537818_length(amino acids)=555AA_BP=260
MGLLRGGLPCARAMARLGAVRSHYCALLLAAALAVCAFYYLGSGRETFSSATKRLKEARAGAPAAPSPPALELARGSVAPAPGAKAKSLE
GGGAGPVDYHLLMMFTKAEHNAALQAKARVALRSLLRLAKFEAHEVLNLHFVSEEASREVAKGLLRELLPPAAGFKCKVIFHDVAVLTDK
LFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEP
CHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRG
GYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVA
RRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECHLSEEDTLPLTHFEDSPAYLLD

--------------------------------------------------------------

>99835_99835_4_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000355729_ETV5_chr3_185783861_ENST00000306376_length(amino acids)=352AA_BP=57
MWPPRCKDPGRQSAEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMS
EPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDT
CVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRY

--------------------------------------------------------------

>99835_99835_5_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000355729_ETV5_chr3_185783861_ENST00000434744_length(amino acids)=352AA_BP=57
MWPPRCKDPGRQSAEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMS
EPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDT
CVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRY

--------------------------------------------------------------

>99835_99835_6_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000355729_ETV5_chr3_185783861_ENST00000537818_length(amino acids)=352AA_BP=57
MWPPRCKDPGRQSAEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMS
EPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDT
CVVPERLEGKVKQEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRY

--------------------------------------------------------------

>99835_99835_7_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000429994_ETV5_chr3_185783861_ENST00000306376_length(amino acids)=414AA_BP=119
MSCCTMVRCVPSAVIVCFLRPPQPGRTVIFHDVAVLTDKLFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKF
KTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVP
GMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG
SLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFS

--------------------------------------------------------------

>99835_99835_8_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000429994_ETV5_chr3_185783861_ENST00000434744_length(amino acids)=414AA_BP=119
MSCCTMVRCVPSAVIVCFLRPPQPGRTVIFHDVAVLTDKLFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKF
KTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVP
GMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG
SLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFS

--------------------------------------------------------------

>99835_99835_9_XXYLT1-ETV5_XXYLT1_chr3_194877178_ENST00000429994_ETV5_chr3_185783861_ENST00000537818_length(amino acids)=414AA_BP=119
MSCCTMVRCVPSAVIVCFLRPPQPGRTVIFHDVAVLTDKLFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKF
KTNIRELFEEFDSFLPGAIIGIAREMQPVYRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVP
GMPGPPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPTMYREGPPYQRRG
SLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFS

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Fusion Protein Functional Features


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:194877178/chr3:185783861)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
XXYLT1

Q8NBI6

ETV5

P41161

FUNCTION: Alpha-1,3-xylosyltransferase, which elongates the O-linked xylose-glucose disaccharide attached to EGF-like repeats in the extracellular domain of target proteins by catalyzing the addition of the second xylose (PubMed:22117070, PubMed:8982869). Known targets include Notch proteins and coagulation factors, such as F9 (PubMed:22117070, PubMed:8982869). {ECO:0000269|PubMed:22117070, ECO:0000269|PubMed:8982869}.FUNCTION: Binds to DNA sequences containing the consensus nucleotide core sequence 5'-GGAA.-3'. {ECO:0000269|PubMed:8152800}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

* Minus value of BPloci means that the break pointn is located before the CDS.
- Retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000310380-34104_106261.6666666666667394.0RegionUDP-alpha-D-xylose binding
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000310380-341_23261.6666666666667394.0Topological domainCytoplasmic
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000355729-231_2358.666666666666664191.0Topological domainCytoplasmic
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000437101-451_2358.666666666666664191.0Topological domainCytoplasmic
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000310380-3424_44261.6666666666667394.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000355729-2324_4458.666666666666664191.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000437101-4524_4458.666666666666664191.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneETV5chr3:194877178chr3:185783861ENST00000306376613368_448216.66666666666666511.0DNA bindingETS
TgeneETV5chr3:194877178chr3:185783861ENST00000434744613368_448216.66666666666666511.0DNA bindingETS

- Not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000355729-23104_10658.666666666666664191.0RegionUDP-alpha-D-xylose binding
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000356740-12104_1060.0188.0RegionUDP-alpha-D-xylose binding
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000437101-45104_10658.666666666666664191.0RegionUDP-alpha-D-xylose binding
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000310380-3445_393261.6666666666667394.0Topological domainLumenal
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000355729-2345_39358.666666666666664191.0Topological domainLumenal
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000356740-121_230.0188.0Topological domainCytoplasmic
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000356740-1245_3930.0188.0Topological domainLumenal
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000437101-4545_39358.666666666666664191.0Topological domainLumenal
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000356740-1224_440.0188.0TransmembraneHelical%3B Signal-anchor for type II membrane protein


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Fusion Protein-Protein Interaction


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type from validated records (BIOGRID-3.4.160)
GenePPI interactors


check button Protein-protein interactors based on sequence similarity (STRING)
GeneSTRING network
XXYLT1
ETV5all structure


check button - Retained interactions in fusion protein (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost interactions due to fusion (protein functional feature from UniProt).
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000310380-34263_266261.6666666666667394.0target proteins
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000355729-23263_26658.666666666666664191.0target proteins
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000356740-12263_2660.0188.0target proteins
HgeneXXYLT1chr3:194877178chr3:185783861ENST00000437101-45263_26658.666666666666664191.0target proteins


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Related Drugs to XXYLT1-ETV5


check button Drugs used for this fusion-positive patient.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDrugSourcePMID

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Related Diseases to XXYLT1-ETV5


check button Diseases that have this fusion gene.
(Manual curation of PubMed, 04-30-2022 + MyCancerGenome)
HgeneTgeneDiseaseSourcePMID

check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneETV5C0033578Prostatic Neoplasms1CTD_human
TgeneETV5C0376358Malignant neoplasm of prostate1CTD_human