Fusion gene	# PMIDs
BCR-ABL	5488
EML4-ALK	636
BCR-ABL1	518
YAP-TAZ	290
PML-RARalpha	276
AC-FOR	243
PML-RARA	180
FIP1L1-PDGFRA	156
KIT-PDGFRA	151
TMPRSS2-ERG	124
SON-IN	114
EWS-FLI1	111
MLL-AF9	102
AML1-ETO	96
ETV6-NTRK3	92
PML-RAR	90
NPM-ALK	89
ZNF292-5S_rRNA	80
GRP78-GRP94	72
SET-CAN	65
COL1A1-COL1A2	64
ABL-BCR	63
RET-PTC	61
COL1A2-Y_RNA	57
KIF5B-RET	54
CCDC6-RET	54
CD74-ROS1	49
FREM3-Y_RNA	37
COL1A1-PDGFB	36
TEL-AML1	36
YAP1-TAZ	35
SYT-SSX	34
KIAA1549-BRAF	33
PAX3-FOXO1	32
CBFB-MYH11	30
ETV6-RUNX1	30
RUNX1-RUNX1T1	29
MLL-AF4	29
EGFR-HER3	28
STRN-ALK	28
GC-GC	28
PA-SMC	25
EGFR-EGFR	25
EWSR1-FLI1	25
ABL-CML	24
STAT3-STAT3	24
II-ROS	23
MIM-1	21
RET-PTC1	20
SS18-SSX	19
PCM1-JAK2	18
SWI2-SNF2	18
ASPSCR1-TFE3	17
BCR-ABL-ALL	17
FGFR3-TACC3	17
EGFR-ERBB3	16
TCF3-PBX1	16
RHO-RHO	16
PI-PC	16
LMNA-NTRK1	15
BRG1-BRM	15
MLL-ENL	15
TPR-MET	14
RANBP2-ALK	13
TPM3-NTRK1	13
IL-6R-GP130	13
BCR-FGFR1	13
EWS-FLI-1	13
THRA-THRA1/BTR	13
ETV6-ABL1	12
FAT-b	12
CML-BCR-ABL	12
PAX3-FKHR	12
EWSR1-WT1	12
NONO-TFE3	11
EWSR1-ATF1	11
ATM-ATM	11
a3-B1	11
NCOA4-RET	10
TEL-ABL	10
Cav3.1-Cav3.2	10
KMT2A-MLLT3	10
EWS-ERG	10
HER3-EGFR	10
S23-S24	10
RET-PTC3	10
S14-S19	10
EZR-ROS1	9
DCTN1-ALK	9
GOPC-ROS1	9
CRTC1-MAML2	9
L4-S3	9
FUS-ERG	9
MLL-AF6	9
LPA-LPA	9
SLC34A2-ROS1	8
ETV6-PDGFRB	8
CD74-NRG1	8
PRCC-TFE3	8
ABL1-BCR	8
OK-SI	8
ATIC-ALK	8
FGFR2-BICC1	8
RAC1-P38	8
KMT2A-AFF1	8
RUNX1-ETO	8
MYB-NFIB	8
TG-TG	8
TNF-TNF	8
EBF1-PDGFRB	7
PAX7-FOXO1	7
NUP214-ABL1	7
CLTC-ALK	7
TEL-JAK2	7
MAIR-GR	7
FOR-FOR	7
MYC-MYC	7
CIG-FISH	6
ABL1-ALL	6
JAZF1-SUZ12	6
C-Kit-PDGFRA	6
ASPL-TFE3	6
EWS-WT1	6
PAX7-FKHR	6
CBFA2T3-GLIS2	6
HIP1-ALK	6
OF-ABETA	6
MLL-MLLT3	6
AHR-AHR	6
API2-MALT1	6
PAX3-FOXO1A	6
PTC-PTC	6
EWS-ATF1	6
NSP2-NSP3	6
BAD-BAD	6
FUS-DDIT3	6
NAB2-STAT6	6
PC-PC	6
PIGS-PIGS	6
RBM10-TFE3	5
II-TRK	5
TPR-NTRK1	5
EML4-NTRK3	5
AML1-MTG8	5
SP1-SP1	5
EWSR1-NR4A3	5
ERBB1-ERBB3	5
ERG-TMPRSS2	5
MLL-ELL	5
AF4-MLL	5
NPM1-ALK	5
ZMYM2-FGFR1	5
OF-APP	5
TLS-ERG	5
TRK-ROS1	4
SDC4-ROS1	4
CAD-ALK	4
TPM3-ROS1	4
FN1-ALK	4
TPM4-ALK	4
SMARCA4-SMARCA2	4
MLL-AF10	4
ZCCHC8-ROS1	4
TG-LP	4
TFG-ROS1	4
TEL-PDGFRB	4
EGFR-ErbB-3	4
SND1-BRAF	4
YAP1-MAML2	4
CDKN2A-MTAP	4
HEY1-NCOA2	4
ATR-ATR	4
CD40-CD40	4
CIC-DUX4	4
DES-DES	4
EGFR-RAD51	4
H19-IGF2	4
TF-TF	4
BCR-JAK2	3
MED15-TFE3	3
KMT2A-ARHGEF12	3
ERBB3-EGFR	3
BCAN-NTRK1	3
ERC1-RET	3
FGFR2-AHCYL1	3
SFPQ-TFE3	3
SQSTM1-NTRK1	3
EGFR-SEPT14	3
TRK-ALK	3
ALL1-AF4	3
ATF7IP-PDGFRB	3
FGFR3-BAIAP2L1	3
KLC1-ALK	3
BRD4-NUTM1	3
CIC-CIC	3
FGFR1-TACC1	3
ZNF198-FGFR1	3
FTH1-FTL	3
CALM-AF10	3
RARA-PML	3
EWSR1-CREB1	3
KMT2A-MLLT1	3
MLL-CBP	3
TF-HP	3
LARGE-DIP	3
CEP85L-ROS1	3
FUS-CREB3L2	3
EGFR-SEPTIN14	3
PAK1-PAK2	3
PC3-PC	3
DAP-DAP	3
DEK-NUP214	3
FOS-FOS	3
KIF5B-ALK	3
KL-KL	3
RHOA-RHOA	3
STAT1-STAT1	3
BCOR-RARA	2
NPM-RAR	2
PK3-PK1	2
KAT6B-KANSL1	2
FGFR2-CCDC6	2
SLC25A40-ABCB1	2
CLDN18-ARHGAP26	2
MOZ-TIF2	2
KMT2A-CBL	2
FGFR1OP2-FGFR1	2
SYT-SSX1	2
FTH-FTL	2
CARS-ALK	2
EML1-ABL1	2
FRAXA-FRAXE	2
SQSTM1-ALK	2
LEPR-LEPR	2
SFN-SFN	2
SLC45A3-ELK4	2
SQSTM1-NTRK3	2
MLL-MLLT1	2
MEF2D-HNRNPUL1	2
AGAP3-BRAF	2
NTRK3-ETV6	2
L4-S4	2
TEL-SYK	2
MYCN-ALK	2
NPM1-RARA	2
AGK-BRAF	2
SET-NUP214	2
AKAP9-BRAF	2
ITK-SYK	2
YAP1-WWTR1	2
ETV6-TRKC	2
MLL-GMPS	2
ErbB-3-ERBB	2
TMPRSS2-ETV1	2
AF10-CALM	2
KMT2A-USP2	2
TPM3-ALK	2
ETV6-ACSL6	2
LRP5-LRP6	2
PAP-PI	2
YWHAE-NUTM2A	2
JAZF1-JJAZ1	2
RET-CCDC6	2
TRIM33-RET	2
PTPRK-RSPO3	2
HSA-TF	2
TPM3-TRKA	2
COL1A1-COL3A1	2
MLL-KIAA0284	2
p63-CK	2
RBPMS-NTRK3	2
KMT2A-AFDN	2
PPFIBP1-ALK	2
FGFR2-TACC2	2
RUNX1-MTG8	2
ROS1-CD74	2
NDRG1-ERG	2
NRG1-NRG1	2
PICALM-MLLT10	2
MECT1-MAML2	2
APC-APC	2
APOBEC3A-APOBEC3B	2
APP-APP	2
CD34-CD34	2
ETV6-FLT3	2
EWSR1-POU5F1	2
HMGB1-HMGB1	2
KIF5B-MET	2
MSN-MSN	2
MUC1-MUC1	2
MYC-IGH@	2
MYC-PVT1	2
PTPRZ1-MET	2
PVT1-MYC	2
RAC1-RAC1	2
SMAD2-SMAD2	2
TPR-FGFR1	2
VDR-VDR	2
NUP98-HOXD13	2
NUP98-NSD1	2
P2RY8-CRLF2	2
PCNA-PCNA	2
CK-PC	1
HSA-C3	1
PAX5-ETV6	1
PAX3-NCOA2	1
ABL-ALL	1
AFF1-KMT2A	1
EWSR1-ERG	1
YAP1-SS18	1
YAP-WWTR1	1
SRGAP3-RAF1	1
MT-ACS	1
HLA-A-ROS1	1
NRG1-HRG	1
EWSR1-CREB	1
NPM-RARalpha	1
GTF2I-RARA	1
TMEM154-RASGRF1	1
PEP-ASP	1
CUX1-BRAF	1
CIC-FOXO4	1
QKI-NTRK2	1
PRKN-PACRG	1
TEL-PDGFR	1
FIG-ROS1	1
BRM-BRG1	1
RNF213-SLC26A11	1
PI-AN	1
PTC1-RET	1
AML1-RUNX1T1	1
II-OSM	1
BCR-PDGFRA	1
EWSR1-CHN	1
MLL-MLLT10	1
GRID1-GLUD1	1
CI-PAP	1
SNF2-SWI2	1
TR-HDS	1
PAX3-MAML3	1
RAR-PML	1
ZC3H7B-BCOR	1
STA-II	1
LBP-1B-LBP-9	1
KLK2-FGFR2	1
LAN-Gx	1
OF-AAA	1
MARS-AVIL	1
CAP-PCL	1
NUTM1-BRD4	1
YWHAE-FAM22A	1
EWSR1-NFATC2	1
IL-6RA-GP130	1
BCOR-L3MBTL2	1
AKAP8-BRD4	1
BCL2L14-ETV6	1
MKRN1-BRAF	1
CAV1-MET	1
LCLAT1-ALK	1
beta-5-beta-4	1
FOP-FGFR1	1
NUP214-ABL	1
ETV6-ARG	1
MLL-MLLT4	1
ETO2-GLIS2	1
CLDN18-ARHGAP6	1
NDR1-1	1
TBL1XR1-TP63	1
MLL-GRAF	1
MLL-AF-1P	1
CELL-CPA	1
DP3-DP9	1
BLOC1S5-TXNDC5	1
RAP1A-K-REV	1
ST7-MET	1
LMNA-TRKA	1
AFAP1-NTRK2	1
CD74-NTRK1	1
HER2-CDK12	1
PKM-PKLR	1
KTN1-RET	1
CBFB-SMMHC	1
KMT2A-AF9	1
YWHAZ-UBC	1
NUMA1-RARA	1
KMT2A-ELL	1
ETV6-PDGFR	1
SS18-SSX2	1
CBP-MORF	1
MLL-AFF1	1
BCR-c-ABL	1
WWOX-FOR	1
D10S170-PDGFRB	1
BRCA2-APRIN	1
FLI1-EWS	1
ARR1-ARR2	1
VIM-KO	1
GPC3-GPC4	1
TRIO-TERT	1
TFG-TRK	1
SS18-SSX4	1
TORC1-MAML2	1
PKLR-PKM2	1
YWHAZ-14-3-3	1
EGFR-c-erbB3	1
TCF3-HLF	1
EWSR1-FEV	1
KMT2A-MAML2	1
RUNX1-ETV6	1
PL-PE-1	1
YWHAE-NUTM2B	1
NME2-MYC	1
ALL-ABL	1
TBLR1-RARalpha	1
SS18-SSX1	1
SHANK-AN	1
LIPO-GNS	1
DHS-AMP	1
RET-H4	1
CTX-FU	1
MYST3-CREBBP	1
RPN1-EVI1	1
BGL-b	1
HPT-JP	1
CUX1-RET	1
EML4-ALK1	1
STAT6-NAB2	1
HRG1-NRG1	1
LIM-HCC	1
ATP1A1-NKCC2	1
C3-HP	1
MCP-DAF	1
VAPA-RAB31	1
MLLT1-MLL	1
IKZF2-ERBB4	1
RAD51C-ATXN7	1
VCL-ALK	1
ATP1B1-NRG1	1
SLC3A2-NRG1	1
SMARCA2-SMARCA4	1
ACTG2-ALK	1
ALDH2-ALDH2	1
ARNT-ARNT	1
ATXN2-SH2B3	1
BAG4-FGFR1	1
C7-C7	1
CA1-CA1	1
CLIP1-ALK	1
CLK1-CLK4	1
CNTRL-FGFR1	1
COIL-COIL	1
CTNND1-ARHGAP26	1
CTRL-CTRL	1
CUX1-FGFR1	1
CYP21A1P-CYP21A2	1
DNAJB1-PRKACA	1
DST-DST	1
EIF3E-RSPO2	1
EPCAM-MSH2	1
ERAP1-ERAP2	1
ESR1-CCDC170	1
ETV6-JAK2	1
EWSR1-CREB3L1	1
EWSR1-CREM	1
EWSR1-DDIT3	1
FGFR1-BCR	1
FGFR1OP-FGFR1	1
FGFR2-TACC3	1
FN1-EGF	1
FN1-FGFR1	1
GCC2-ALK	1
GPI-GPI	1
GSDMD-GSDMD	1
HSPA1A-HSPA1B	1
IGH-@-BCL2	1
IK-IK	1
LMO7-ALK	1
LUM-LUM	1
LYN-LYN	1
MALAT1-GLI1	1
MALAT1-TFEB	1
MAN2A1-FER	1
MARCKS-MARCKS	1
MBP-MBP	1
MEG3-DLK1	1
MN1-ETV6	1
MNX1-ETV6	1
MYB-QKI	1
MYO18A-FGFR1	1
MYO5A-NTRK3	1
NCDN-PDGFRA	1
NEDD4-NEDD4	1
NF1-NF1	1
NIN-PDGFRB	1
NME1-NME2	1
NQO1-NQO1	1
PTCH1-PTCH1	1
PTS-PTS	1
RAP1A-RAP1B	1
RBM15-MKL1	1
RCSD1-ABL1	1
RD3-RD3	1
RUNX1-MECOM	1
S1PR5-S1PR5	1
SCD-SCD	1
SERPINE1-FOSB	1
SFPQ-ABL1	1
SFPQ-TFEB	1
SLC22A5-SLC22A5	1
SLC45A3-ERG	1
STAR-STAR	1
STAT5B-RARA	1
TFG-MET	1
TJP1-TJP1	1
TMEM106B-ROS1	1
TMSB10-TRABD2A	1
TNC-TNC	1
UBB-VEGFA	1
UGT1A6-UGT1A6	1
USP1-USP1	1
VIT-VIT	1
VPS35-VPS35	1
NUP98-DDX10	1
NUP98-HOXA13	1
NUP98-HOXA9	1
NUP98-KDM5A	1
NUP98-RARG	1
PAM-PAM	1
PAPSS2-PTEN	1
PML-PML	1
PPAT-PAICS	1