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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPUSD3 (NCBI Gene ID:285367)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPUSD3
Gene ID: 285367
Gene Symbol

RPUSD3

Gene ID

285367

Gene NameRNA pseudouridine synthase D3
Synonyms-
Cytomap

3p25.3

Type of Geneprotein-coding
Descriptionmitochondrial mRNA pseudouridine synthase RPUSD3RNA pseudouridylate synthase domain containing 3RNA pseudouridylate synthase domain-containing protein 3
Modification date20200313
UniProtAcc

Q6P087


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0032543Mitochondrial translation
GO:0045727Positive regulation of translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID


check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPUSD3[title] AND translation [title] AND human.'
GeneTitlePMID
RPUSD3..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST0000038382098807159880855Frame-shift
ENST0000038382098818679881991Frame-shift
ENST0000038382098823819882489In-frame
ENST0000038382098838829883927In-frame
ENST0000038382098851489885285Frame-shift

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST00000383820988238198824891242410517351136171
ENST0000038382098838829883927124226530935187102

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
Q6P08713617126351ChainID=PRO_0000300822;Note=Mitochondrial mRNA pseudouridine synthase RPUSD3
Q6P0878710226351ChainID=PRO_0000300822;Note=Mitochondrial mRNA pseudouridine synthase RPUSD3
Q6P0878710289103Alternative sequenceID=VSP_027870;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:15489334;Dbxref=PMID:15489334
Q6P087136171137351Alternative sequenceID=VSP_027869;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:14702039;Dbxref=PMID:14702039


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
KIRCRPUSD31.030101034001791.09375608261512e-08


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
COADRPUSD3120.03493247377271640.1838913390313380.213210395419575-0.239101585882308-0.152722418286618
TGCTRPUSD3120.03296508428391090.1423346428571430.2153651.266367328952862.01954890362818
UCECRPUSD3120.04271281044806120.1885005325443790.21000142394822-0.198453893574615-0.129582223173819
UVMRPUSD3120.04844926335636810.1931407142857140.214008787878788-0.1456407067614290.505238297567576

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
HNSCRPUSD3120.007589453054229690.1877219047619050.2180194052044610.1499039862139280.399886204305782
LUSCRPUSD3120.02045873423846740.159640.2642703499079190.63569731954760.229773415311618

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
COADRPUSD30.0132519250.030918007

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPUSD3 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
TGCTEpifactorRPUSD3TRIM280.8186157236.39E-39
TGCTIUPHARRPUSD3TRIM280.8186157236.39E-39
TGCTKinaseRPUSD3TRIM280.8186157236.39E-39
TGCTTFRPUSD3MYBL20.8058129117.19E-37
THYMCell metabolism geneRPUSD3NOP560.8018508991.31E-28
THYMCell metabolism geneRPUSD3DPM20.8022723361.17E-28
THYMCell metabolism geneRPUSD3EXOSC50.8029663889.69E-29
THYMCell metabolism geneRPUSD3DHRS40.8034208318.56E-29
THYMCell metabolism geneRPUSD3UROD0.8044676676.43E-29
THYMCell metabolism geneRPUSD3SSR20.8052378245.20E-29
THYMCell metabolism geneRPUSD3PMPCA0.8066717123.49E-29
THYMCell metabolism geneRPUSD3GMPPA0.8067846763.39E-29
THYMCell metabolism geneRPUSD3FPGS0.8077715522.57E-29
THYMCell metabolism geneRPUSD3TIMM100.8090502471.79E-29
THYMCell metabolism geneRPUSD3GEMIN60.8112365019.64E-30
THYMCell metabolism geneRPUSD3PSME10.8117439178.34E-30
THYMCell metabolism geneRPUSD3PSMB10.8142111054.09E-30
THYMCell metabolism geneRPUSD3SEC130.8189992469.94E-31
THYMCell metabolism geneRPUSD3PSMD80.8193182669.03E-31
THYMCell metabolism geneRPUSD3LSM20.8193826458.86E-31
THYMCell metabolism geneRPUSD3FAU0.8207745535.82E-31
THYMCell metabolism geneRPUSD3HMOX20.8215443944.61E-31
THYMCell metabolism geneRPUSD3PSME20.8217286894.35E-31
THYMCell metabolism geneRPUSD3SNRPE0.8224154713.53E-31
THYMCell metabolism geneRPUSD3SLC27A50.8244726611.87E-31
THYMCell metabolism geneRPUSD3PSMC50.8250182651.58E-31
THYMCell metabolism geneRPUSD3SNRPB0.8256527891.30E-31
THYMCell metabolism geneRPUSD3DHRS4L20.8279570916.28E-32
THYMCell metabolism geneRPUSD3DPM30.8288519844.72E-32
THYMCell metabolism geneRPUSD3PSMB40.8295890853.73E-32
THYMCell metabolism geneRPUSD3POLR2J0.8314465932.05E-32
THYMCell metabolism geneRPUSD3ITPA0.8331511741.18E-32
THYMCell metabolism geneRPUSD3SRM0.8332771161.13E-32
THYMCell metabolism geneRPUSD3MTMR140.833426671.07E-32
THYMCell metabolism geneRPUSD3DGUOK0.8346407877.20E-33
THYMCell metabolism geneRPUSD3GALK10.8366898133.63E-33
THYMCell metabolism geneRPUSD3UROS0.8370075763.27E-33
THYMCell metabolism geneRPUSD3TBCB0.8385342931.95E-33
THYMCell metabolism geneRPUSD3POLR2F0.8395160521.39E-33
THYMCell metabolism geneRPUSD3WBSCR220.8395261091.39E-33
THYMCell metabolism geneRPUSD3MTX10.8401285271.13E-33
THYMCell metabolism geneRPUSD3POLD20.84305834.08E-34
THYMCell metabolism geneRPUSD3HSD17B100.8430977494.03E-34
THYMCell metabolism geneRPUSD3TOMM220.8449399722.10E-34
THYMCell metabolism geneRPUSD3PSMC10.8451001861.98E-34
THYMCell metabolism geneRPUSD3GEMIN70.8472340819.22E-35
THYMCell metabolism geneRPUSD3PSMB60.847344618.86E-35
THYMCell metabolism geneRPUSD3PSMA40.8473763738.76E-35
THYMCell metabolism geneRPUSD3SEC61G0.8490286484.80E-35
THYMCell metabolism geneRPUSD3EXOSC40.850429952.87E-35
THYMCell metabolism geneRPUSD3TIMM130.8520526981.57E-35
THYMCell metabolism geneRPUSD3GUK10.8532402741.00E-35
THYMCell metabolism geneRPUSD3PAFAH1B30.85395997.64E-36
THYMCell metabolism geneRPUSD3NANS0.8542581056.82E-36
THYMCell metabolism geneRPUSD3POLR2I0.854719945.72E-36
THYMCell metabolism geneRPUSD3DTYMK0.8548911345.36E-36
THYMCell metabolism geneRPUSD3MVD0.8557794793.81E-36
THYMCell metabolism geneRPUSD3PSMD130.8579053621.67E-36
THYMCell metabolism geneRPUSD3POLR2H0.8601879396.79E-37
THYMCell metabolism geneRPUSD3PGLS0.8603506666.36E-37
THYMCell metabolism geneRPUSD3TIMM8B0.863835661.56E-37
THYMCell metabolism geneRPUSD3PSMB100.8654743617.92E-38
THYMCell metabolism geneRPUSD3PGP0.8660114326.33E-38
THYMCell metabolism geneRPUSD3TOMM400.8709542267.74E-39
THYMCell metabolism geneRPUSD3TIMM17B0.8722063164.48E-39
THYMCell metabolism geneRPUSD3PHKG20.8733955842.65E-39
THYMCell metabolism geneRPUSD3EBP0.8771560694.88E-40
THYMCell metabolism geneRPUSD3PSMB70.8780388243.25E-40
THYMCell metabolism geneRPUSD3TIMM500.8832581422.77E-41
THYMCell metabolism geneRPUSD3ACOT80.8856628768.56E-42
THYMCell metabolism geneRPUSD3LSM40.8857689318.12E-42
THYMCell metabolism geneRPUSD3PSMD40.8902115478.61E-43
THYMCell metabolism geneRPUSD3LSM30.8927990262.23E-43
THYMCell metabolism geneRPUSD3APRT0.8958691314.28E-44
THYMCell metabolism geneRPUSD3SNRPD20.8994413625.88E-45
THYMCell metabolism geneRPUSD3PSMB30.9010088712.40E-45
THYMCell metabolism geneRPUSD3PSMC30.9015619191.75E-45
THYMCGCRPUSD3RBM100.8269797468.55E-32
THYMCGCRPUSD3COX6C0.8399565641.20E-33
THYMCGCRPUSD3SDHAF20.8442490512.68E-34
THYMCGCRPUSD3TFPT0.8706137578.97E-39
THYMEpifactorRPUSD3HIST2H2AC0.8006490171.82E-28
THYMEpifactorRPUSD3EXOSC50.8029663889.69E-29
THYMEpifactorRPUSD3PRMT10.8050334555.50E-29
THYMEpifactorRPUSD3ZGPAT0.8115337178.85E-30
THYMEpifactorRPUSD3PPM1G0.8170827891.76E-30
THYMEpifactorRPUSD3C17orf490.8221571973.82E-31
THYMEpifactorRPUSD3CDK50.8228752273.07E-31
THYMEpifactorRPUSD3CCDC1010.8232077162.77E-31
THYMEpifactorRPUSD3SS18L20.8234007942.61E-31
THYMEpifactorRPUSD3LAS1L0.8271176988.19E-32
THYMEpifactorRPUSD3FBL0.8298942723.38E-32
THYMEpifactorRPUSD3RRP80.8423374285.25E-34
THYMEpifactorRPUSD3INO80E0.8481494876.62E-35
THYMEpifactorRPUSD3EXOSC40.850429952.87E-35
THYMEpifactorRPUSD3PPP4C0.8581584111.51E-36
THYMEpifactorRPUSD3ZNHIT10.8603944866.25E-37
THYMEpifactorRPUSD3PAF10.8614896124.03E-37
THYMEpifactorRPUSD3SIRT60.8630307792.16E-37
THYMEpifactorRPUSD3TAF100.8686737782.06E-38
THYMEpifactorRPUSD3TFPT0.8706137578.97E-39
THYMEpifactorRPUSD3RUVBL20.8762726367.30E-40
THYMEpifactorRPUSD3PRPF310.8825001993.99E-41
THYMEpifactorRPUSD3BRMS10.8841059231.84E-41
THYMIUPHARRPUSD3PRMT10.8050334555.50E-29
THYMIUPHARRPUSD3SLC39A30.8111426749.90E-30
THYMIUPHARRPUSD3PSMB10.8142111054.09E-30
THYMIUPHARRPUSD3HMOX20.8215443944.61E-31
THYMIUPHARRPUSD3CDK50.8228752273.07E-31
THYMIUPHARRPUSD3SLC27A50.8244726611.87E-31
THYMIUPHARRPUSD3DYRK40.8253757341.41E-31
THYMIUPHARRPUSD3PSMB60.847344618.86E-35
THYMIUPHARRPUSD3PPIA0.852539971.31E-35
THYMIUPHARRPUSD3MVD0.8557794793.81E-36
THYMIUPHARRPUSD3SIRT60.8630307792.16E-37
THYMIUPHARRPUSD3PHKG20.8733955842.65E-39
THYMKinaseRPUSD3ADCK40.8127828466.18E-30
THYMKinaseRPUSD3CDK50.8228752273.07E-31
THYMKinaseRPUSD3DYRK40.8253757341.41E-31
THYMKinaseRPUSD3PHKG20.8733955842.65E-39
THYMTFRPUSD3DNTTIP10.8009451741.68E-28
THYMTFRPUSD3IRF30.8113801279.25E-30
THYMTFRPUSD3ZGPAT0.8115337178.85E-30
THYMTFRPUSD3SNAPC20.8126213046.48E-30
THYMTFRPUSD3MYPOP0.8126827856.36E-30
THYMTFRPUSD3ZNF4440.821677624.42E-31
THYMTFRPUSD3USF10.8223373313.62E-31
THYMTFRPUSD3PIN10.8281904185.83E-32
THYMTFRPUSD3RBCK10.8283533265.54E-32
THYMTFRPUSD3ZNF6680.8284010225.45E-32
THYMTFRPUSD3THYN10.8290527314.43E-32
THYMTFRPUSD3GTF3A0.832531561.44E-32
THYMTFRPUSD3ZNF7870.8345362337.45E-33
THYMTFRPUSD3ZNF6880.8690122731.79E-38
THYMTFRPUSD3DRAP10.8719789124.95E-39
THYMTSGRPUSD3GNB2L10.8010328191.64E-28
THYMTSGRPUSD3MAD1L10.8064409073.73E-29
THYMTSGRPUSD3GLTSCR20.8072350282.99E-29
THYMTSGRPUSD3IRF30.8113801279.25E-30
THYMTSGRPUSD3AIP0.8125197016.67E-30
THYMTSGRPUSD3PFN10.8135900384.89E-30
THYMTSGRPUSD3HTRA20.8239191942.22E-31
THYMTSGRPUSD3PIN10.8281904185.83E-32
THYMTSGRPUSD3ZNF6680.8284010225.45E-32
THYMTSGRPUSD3NPRL20.8381086892.25E-33
THYMTSGRPUSD3TSSC40.8466551931.14E-34
THYMTSGRPUSD3GADD45GIP10.8495737223.93E-35
THYMTSGRPUSD3PARK70.8545511396.10E-36
THYMTSGRPUSD3SIRT60.8630307792.16E-37
THYMTSGRPUSD3BRMS10.8841059231.84E-41
UCSCell metabolism geneRPUSD3NOP560.8018508991.31E-28
UCSCell metabolism geneRPUSD3DPM20.8022723361.17E-28
UCSCell metabolism geneRPUSD3EXOSC50.8029663889.69E-29
UCSCell metabolism geneRPUSD3DHRS40.8034208318.56E-29
UCSCell metabolism geneRPUSD3UROD0.8044676676.43E-29
UCSCell metabolism geneRPUSD3SSR20.8052378245.20E-29
UCSCell metabolism geneRPUSD3PMPCA0.8066717123.49E-29
UCSCell metabolism geneRPUSD3GMPPA0.8067846763.39E-29
UCSCell metabolism geneRPUSD3FPGS0.8077715522.57E-29
UCSCell metabolism geneRPUSD3TIMM100.8090502471.79E-29
UCSCell metabolism geneRPUSD3GEMIN60.8112365019.64E-30
UCSCell metabolism geneRPUSD3PSME10.8117439178.34E-30
UCSCell metabolism geneRPUSD3PSMB10.8142111054.09E-30
UCSCell metabolism geneRPUSD3SEC130.8189992469.94E-31
UCSCell metabolism geneRPUSD3PSMD80.8193182669.03E-31
UCSCell metabolism geneRPUSD3LSM20.8193826458.86E-31
UCSCell metabolism geneRPUSD3FAU0.8207745535.82E-31
UCSCell metabolism geneRPUSD3HMOX20.8215443944.61E-31
UCSCell metabolism geneRPUSD3PSME20.8217286894.35E-31
UCSCell metabolism geneRPUSD3SNRPE0.8224154713.53E-31
UCSCell metabolism geneRPUSD3SLC27A50.8244726611.87E-31
UCSCell metabolism geneRPUSD3PSMC50.8250182651.58E-31
UCSCell metabolism geneRPUSD3SNRPB0.8256527891.30E-31
UCSCell metabolism geneRPUSD3DHRS4L20.8279570916.28E-32
UCSCell metabolism geneRPUSD3DPM30.8288519844.72E-32
UCSCell metabolism geneRPUSD3PSMB40.8295890853.73E-32
UCSCell metabolism geneRPUSD3POLR2J0.8314465932.05E-32
UCSCell metabolism geneRPUSD3ITPA0.8331511741.18E-32
UCSCell metabolism geneRPUSD3SRM0.8332771161.13E-32
UCSCell metabolism geneRPUSD3MTMR140.833426671.07E-32
UCSCell metabolism geneRPUSD3DGUOK0.8346407877.20E-33
UCSCell metabolism geneRPUSD3GALK10.8366898133.63E-33
UCSCell metabolism geneRPUSD3UROS0.8370075763.27E-33
UCSCell metabolism geneRPUSD3TBCB0.8385342931.95E-33
UCSCell metabolism geneRPUSD3POLR2F0.8395160521.39E-33
UCSCell metabolism geneRPUSD3WBSCR220.8395261091.39E-33
UCSCell metabolism geneRPUSD3MTX10.8401285271.13E-33
UCSCell metabolism geneRPUSD3POLD20.84305834.08E-34
UCSCell metabolism geneRPUSD3HSD17B100.8430977494.03E-34
UCSCell metabolism geneRPUSD3TOMM220.8449399722.10E-34
UCSCell metabolism geneRPUSD3PSMC10.8451001861.98E-34
UCSCell metabolism geneRPUSD3GEMIN70.8472340819.22E-35
UCSCell metabolism geneRPUSD3PSMB60.847344618.86E-35
UCSCell metabolism geneRPUSD3PSMA40.8473763738.76E-35
UCSCell metabolism geneRPUSD3SEC61G0.8490286484.80E-35
UCSCell metabolism geneRPUSD3EXOSC40.850429952.87E-35
UCSCell metabolism geneRPUSD3TIMM130.8520526981.57E-35
UCSCell metabolism geneRPUSD3GUK10.8532402741.00E-35
UCSCell metabolism geneRPUSD3PAFAH1B30.85395997.64E-36
UCSCell metabolism geneRPUSD3NANS0.8542581056.82E-36
UCSCell metabolism geneRPUSD3POLR2I0.854719945.72E-36
UCSCell metabolism geneRPUSD3DTYMK0.8548911345.36E-36
UCSCell metabolism geneRPUSD3MVD0.8557794793.81E-36
UCSCell metabolism geneRPUSD3PSMD130.8579053621.67E-36
UCSCell metabolism geneRPUSD3POLR2H0.8601879396.79E-37
UCSCell metabolism geneRPUSD3PGLS0.8603506666.36E-37
UCSCell metabolism geneRPUSD3TIMM8B0.863835661.56E-37
UCSCell metabolism geneRPUSD3PSMB100.8654743617.92E-38
UCSCell metabolism geneRPUSD3PGP0.8660114326.33E-38
UCSCell metabolism geneRPUSD3TOMM400.8709542267.74E-39
UCSCell metabolism geneRPUSD3TIMM17B0.8722063164.48E-39
UCSCell metabolism geneRPUSD3PHKG20.8733955842.65E-39
UCSCell metabolism geneRPUSD3EBP0.8771560694.88E-40
UCSCell metabolism geneRPUSD3PSMB70.8780388243.25E-40
UCSCell metabolism geneRPUSD3TIMM500.8832581422.77E-41
UCSCell metabolism geneRPUSD3ACOT80.8856628768.56E-42
UCSCell metabolism geneRPUSD3LSM40.8857689318.12E-42
UCSCell metabolism geneRPUSD3PSMD40.8902115478.61E-43
UCSCell metabolism geneRPUSD3LSM30.8927990262.23E-43
UCSCell metabolism geneRPUSD3APRT0.8958691314.28E-44
UCSCell metabolism geneRPUSD3SNRPD20.8994413625.88E-45
UCSCell metabolism geneRPUSD3PSMB30.9010088712.40E-45
UCSCell metabolism geneRPUSD3PSMC30.9015619191.75E-45
UCSCGCRPUSD3RBM100.8269797468.55E-32
UCSCGCRPUSD3COX6C0.8399565641.20E-33
UCSCGCRPUSD3SDHAF20.8442490512.68E-34
UCSCGCRPUSD3TFPT0.8706137578.97E-39
UCSEpifactorRPUSD3HIST2H2AC0.8006490171.82E-28
UCSEpifactorRPUSD3EXOSC50.8029663889.69E-29
UCSEpifactorRPUSD3PRMT10.8050334555.50E-29
UCSEpifactorRPUSD3ZGPAT0.8115337178.85E-30
UCSEpifactorRPUSD3PPM1G0.8170827891.76E-30
UCSEpifactorRPUSD3C17orf490.8221571973.82E-31
UCSEpifactorRPUSD3CDK50.8228752273.07E-31
UCSEpifactorRPUSD3CCDC1010.8232077162.77E-31
UCSEpifactorRPUSD3SS18L20.8234007942.61E-31
UCSEpifactorRPUSD3LAS1L0.8271176988.19E-32
UCSEpifactorRPUSD3FBL0.8298942723.38E-32
UCSEpifactorRPUSD3RRP80.8423374285.25E-34
UCSEpifactorRPUSD3INO80E0.8481494876.62E-35
UCSEpifactorRPUSD3EXOSC40.850429952.87E-35
UCSEpifactorRPUSD3PPP4C0.8581584111.51E-36
UCSEpifactorRPUSD3ZNHIT10.8603944866.25E-37
UCSEpifactorRPUSD3PAF10.8614896124.03E-37
UCSEpifactorRPUSD3SIRT60.8630307792.16E-37
UCSEpifactorRPUSD3TAF100.8686737782.06E-38
UCSEpifactorRPUSD3TFPT0.8706137578.97E-39
UCSEpifactorRPUSD3RUVBL20.8762726367.30E-40
UCSEpifactorRPUSD3PRPF310.8825001993.99E-41
UCSEpifactorRPUSD3BRMS10.8841059231.84E-41
UCSIUPHARRPUSD3PRMT10.8050334555.50E-29
UCSIUPHARRPUSD3SLC39A30.8111426749.90E-30
UCSIUPHARRPUSD3PSMB10.8142111054.09E-30
UCSIUPHARRPUSD3HMOX20.8215443944.61E-31
UCSIUPHARRPUSD3CDK50.8228752273.07E-31
UCSIUPHARRPUSD3SLC27A50.8244726611.87E-31
UCSIUPHARRPUSD3DYRK40.8253757341.41E-31
UCSIUPHARRPUSD3PSMB60.847344618.86E-35
UCSIUPHARRPUSD3PPIA0.852539971.31E-35
UCSIUPHARRPUSD3MVD0.8557794793.81E-36
UCSIUPHARRPUSD3SIRT60.8630307792.16E-37
UCSIUPHARRPUSD3PHKG20.8733955842.65E-39
UCSKinaseRPUSD3ADCK40.8127828466.18E-30
UCSKinaseRPUSD3CDK50.8228752273.07E-31
UCSKinaseRPUSD3DYRK40.8253757341.41E-31
UCSKinaseRPUSD3PHKG20.8733955842.65E-39
UCSTFRPUSD3DNTTIP10.8009451741.68E-28
UCSTFRPUSD3IRF30.8113801279.25E-30
UCSTFRPUSD3ZGPAT0.8115337178.85E-30
UCSTFRPUSD3SNAPC20.8126213046.48E-30
UCSTFRPUSD3MYPOP0.8126827856.36E-30
UCSTFRPUSD3ZNF4440.821677624.42E-31
UCSTFRPUSD3USF10.8223373313.62E-31
UCSTFRPUSD3PIN10.8281904185.83E-32
UCSTFRPUSD3RBCK10.8283533265.54E-32
UCSTFRPUSD3ZNF6680.8284010225.45E-32
UCSTFRPUSD3THYN10.8290527314.43E-32
UCSTFRPUSD3GTF3A0.832531561.44E-32
UCSTFRPUSD3ZNF7870.8345362337.45E-33
UCSTFRPUSD3ZNF6880.8690122731.79E-38
UCSTFRPUSD3DRAP10.8719789124.95E-39
UCSTSGRPUSD3GNB2L10.8010328191.64E-28
UCSTSGRPUSD3MAD1L10.8064409073.73E-29
UCSTSGRPUSD3GLTSCR20.8072350282.99E-29
UCSTSGRPUSD3IRF30.8113801279.25E-30
UCSTSGRPUSD3AIP0.8125197016.67E-30
UCSTSGRPUSD3PFN10.8135900384.89E-30
UCSTSGRPUSD3HTRA20.8239191942.22E-31
UCSTSGRPUSD3PIN10.8281904185.83E-32
UCSTSGRPUSD3ZNF6680.8284010225.45E-32
UCSTSGRPUSD3NPRL20.8381086892.25E-33
UCSTSGRPUSD3TSSC40.8466551931.14E-34
UCSTSGRPUSD3GADD45GIP10.8495737223.93E-35
UCSTSGRPUSD3PARK70.8545511396.10E-36
UCSTSGRPUSD3SIRT60.8630307792.16E-37
UCSTSGRPUSD3BRMS10.8841059231.84E-41
UVMCell metabolism geneRPUSD3ENTPD60.8031779533.17E-19
UVMCell metabolism geneRPUSD3MTMR140.8463019724.91E-23
UVMEpifactorRPUSD3HDAC110.8374686543.63E-22
UVMIUPHARRPUSD3HDAC110.8374686543.63E-22
UVMIUPHARRPUSD3IL17RC0.8699153111.17E-25


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
HNSCRPUSD3PUS72.635278155529090.000182808133786239
ESCARPUSD3RPUSD2-1.168530401226440.0009765625
STADRPUSD3RPUSD2-1.324387730886160.00192895717918873
ESCARPUSD3MRPL47-2.263737117967150.001953125
CHOLRPUSD3PUS3-3.411300411914180.00390625
BLCARPUSD3RPUSD1-4.989865584372630.00391769409179688
PRADRPUSD3PUS7L1.555705899559180.00430343371125972
COADRPUSD3RPUSD21.276851314185480.00513318181037904
BLCARPUSD3PUS7L-1.936782736366330.00823211669921875
COADRPUSD3MRPL47-2.295823818382460.00863465666770936
KICHRPUSD3TRUB2-2.061549427115770.00882232189178467
STADRPUSD3MRPL47-1.40086856871550.0118026207201183
ESCARPUSD3TRUB2-1.630554916195490.0185546875
LIHCRPUSD3FASTKD2-2.174264985089780.0264015241133303
CHOLRPUSD3TRUB2-2.30701675175370.02734375
HNSCRPUSD3FASTKD2-1.722193451887510.0410440647583528
LIHCRPUSD3MRPL47-6.595868509485380.0416658979324166
HNSCRPUSD3PUS3-2.561054117734630.049041343804447
KIRCRPUSD3MRPL471.747584753647011.00533732476669e-06
LUSCRPUSD3RPUSD1-3.28154801918631.17196777803049e-08
PRADRPUSD3PUS7-2.665430669490931.37654470439417e-07
LUADRPUSD3RPUSD1-2.356709033672241.47775018005696e-09
LUADRPUSD3PUS1-2.331498162499261.55042044095848e-09
BRCARPUSD3TRUB2-2.532797560689831.7326162077773e-13
KICHRPUSD3PUS1-1.078309724914591.82986259460449e-05
LUSCRPUSD3TRUB2-3.504733788015461.91629083762368e-08
LIHCRPUSD3PUS7-1.368299946781792.71217975233539e-06
PRADRPUSD3NGRN-1.954463306829213.16187259327918e-07
LUADRPUSD3TRUB2-1.929838020306233.47524877088934e-09
KIRPRPUSD3PUS7-1.20385077594783.54335643351078e-05
BRCARPUSD3PUS7L1.855006868843993.75312800430837e-08
BRCARPUSD3FASTKD2-1.956593680899064.12639478109604e-08
PRADRPUSD3PUS31.944036225253194.21699092476427e-07
STADRPUSD3PUS7-5.060743024105984.5965425670147e-06
THCARPUSD3PUS71.247738385190764.88626066707067e-07
LIHCRPUSD3RPUSD1-2.244470372662155.17509156170478e-07
KIRCRPUSD3PUS7-2.055345296801495.48040034437071e-11
BRCARPUSD3RPUSD1-2.140015626189695.49811888788144e-22
PRADRPUSD3RPUSD1-1.429801981227118.19101291320289e-05
KIRPRPUSD3PUS1-4.44191193042758.84756445884705e-09
LUADRPUSD3MRPL47-1.749909098795679.53955602455483e-07


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPUSD3
ICT1, KRT31, KRTAP10-7, KRTAP10-3, MRPL4, HNRNPA1, MRPL39, PLAUR, FAM188A, CBWD1, OLFM4, FBXW11, CLK1, MRPL50, NUP107, NGRN, WBSCR16, SSSCA1, HSPD1, RBM42, NDUFAF7, YARS2, NIT1, ANXA1, LRP1, ATPAF1, EMILIN1, YBEY, RECQL4, SNRNP70, KRTAP1-1, CYSRT1, FBXW8, PLEKHA4, DUSP1, ESR1, LRPPRC, METTL17, ACAT1, ACOT1, ACOT2, AFG3L2, ATP5B, ATP5D, ATP5F1, ATP5J, BCS1L, C17orf80, CARS2, COX2, DAP3, DBT, DHX30, DLAT, DLST, ECHS1, ELAC2, ERAL1, ETFA, ETFB, FKBP4, GLS, GRSF1, GUF1, HSDL2, HSPE1, IARS2, KDELR2, LARS2, LETM1, MDH2, MMAB, MRPL12, MRPL20, MRPL41, MRPL44, MRPL45, MRPL47, MRPL49, MRPL9, MRPS10, MRPS14, MRPS16, MRPS17, MRPS18B, MRPS2, MRPS22, MRPS23, MRPS24, MRPS25, MRPS26, MRPS27, MRPS28, MRPS30, MRPS31, MRPS33, MRPS34, MRPS35, MRPS36, MRPS5, MRPS6, MRPS7, MRPS9, MTIF2, NDC1, NDUFA12, NDUFA2, NDUFA5, NDUFA6, NDUFA7, NDUFA9, NDUFAF2, NDUFAF4, NDUFS1, NDUFS2, NDUFS3, NDUFS6, NDUFS7, NDUFS8, NDUFV1, NDUFV2, NDUFV3, NFS1, NME4, NUDCD3, OGDH, PDHA1, PDHB, PDPR, PHB, PHB2, POTEE, PPIF, PRDX3, PREPL, PTCD3, PYCR1, PYCR2, SHMT2, SLC30A9, SLIRP, STOML2, SUGT1, TACO1, TIMM44, TRAP1, TRMT10C, VARS2, VWA8, TRUB2, C12orf49, FAM120A, PRR3, YBX2, FTL, SRSF3, MSI1, MRPL30, MALSU1, UQCRFS1, RAMP2, MRPL2, HNRNPUL2, NUPL2, CDH23, LONP1, MIPEP, CPS1, RPUSD4, SARDH, MRPL13, PASK, SRSF7, CHCHD4, MCAT, AK4, RBMS2, ZNF346, F12, RBM47, MCCC1, MRPL51, TMLHE, TFIP11,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
RPUSD3chr39880832GAsingle_nucleotide_variantLikely_pathogenicInborn_genetic_diseasesSO:0001583|missense_variant,SO:0001627|intron_variantSO:0001583|missense_variant,SO:0001627|intron_variant
RPUSD3chr39881922GAsingle_nucleotide_variantLikely_pathogenicInborn_genetic_diseasesSO:0001583|missense_variantSO:0001583|missense_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPUSD3COADchr398798679879867GAMissense_Mutationp.R297C5
RPUSD3UCECchr398798399879839GAMissense_Mutationp.A306V3
RPUSD3UCSchr398837479883747CTSilentp.T109T3
RPUSD3UCECchr398836829883682AGMissense_Mutationp.V131A3
RPUSD3LIHCchr398819729881972G-Frame_Shift_Delp.P207fs2
RPUSD3BLCAchr398852439885243GCSilentp.P56P2
RPUSD3UCECchr398797249879724CAMissense_Mutationp.Q344H2
RPUSD3UCECchr398808259880825AGMissense_Mutationp.V252A2
RPUSD3SKCMchr398819179881917CTSilentp.V225V2
RPUSD3UCECchr398836369883636CAMissense_Mutationp.S88I2
RPUSD3UCECchr398837329883732CTMissense_Mutationp.A93T2
RPUSD3CESCchr398798019879801GCMissense_Mutation2
RPUSD3SKCMchr398824549882454GAMissense_Mutationp.P148L2
RPUSD3UCECchr398854179885417TGMissense_Mutationp.E7D2
RPUSD3CESCchr398822399882239CGMissense_Mutation2
RPUSD3CESCchr398824329882432CTSilent2
RPUSD3HNSCchr398798109879810GAMissense_Mutationp.R316W2
RPUSD3HNSCchr398823889882388GAMissense_Mutationp.T170I2
RPUSD3BLCAchr398851829885182CTMissense_Mutation1
RPUSD3SARCchr398856719885671CAMissense_Mutation1
RPUSD3LIHCchr398797409879740A-Frame_Shift_Delp.F339fs1
RPUSD3SARCchr398819059881905GTSilent1
RPUSD3COADchr398852349885234GASilentp.D59D1
RPUSD3LIHCchr398852369885236C-Frame_Shift_Delp.D59fs1
RPUSD3BLCAchr398852629885262GCMissense_Mutationp.S50C1
RPUSD3SARCchr398852849885284GTMissense_Mutation1
RPUSD3DLBCchr398852289885228GTSilentp.P61P1
RPUSD3LIHCchr398823969882396G-Frame_Shift_Delp.P167fs1
RPUSD3BLCAchr398798229879822GCMissense_Mutationp.L312V1
RPUSD3HNSCchr398856329885632GCMissense_Mutation1
RPUSD3LIHCchr398819969881996GASilent1
RPUSD3BLCAchr398839159883915GAMissense_Mutationp.T92M1
RPUSD3SKCMchr398798749879874GASilentp.L294L1
RPUSD3HNSCchr398798109879810GAMissense_Mutation1
RPUSD3LUADchr398807819880781GAMissense_Mutationp.R267C1
RPUSD3HNSCchr398798679879867GAMissense_Mutation1
RPUSD3LUADchr398852799885279CGMissense_Mutationp.Q44H1
RPUSD3STADchr398851729885172CAMissense_Mutationp.R80L1
RPUSD3HNSCchr398823889882388GAMissense_Mutation1
RPUSD3UCSchr398837479883747CTSilent1
RPUSD3LUADchr398807919880791CTMissense_Mutationp.M263I1
RPUSD3STADchr398824759882475ATMissense_Mutationp.L141H1
RPUSD3BLCAchr398852439885243GCSilent1
RPUSD3LUSCchr398822169882216GTSilentp.L200_splice1
RPUSD3CESCchr398853749885374GARNANULL1
RPUSD3THYMchr398851739885173GTSilentp.R80R1
RPUSD3BLCAchr398852629885262GCMissense_Mutation1
RPUSD3MESOchr398856639885663GASilent1
RPUSD3CESCchr398798019879801GCMissense_Mutationp.L319V1
RPUSD3UCECchr398837329883732CTSilentp.L114L1
RPUSD3KIRPchr398852229885222CASilent1
RPUSD3BLCAchr398839159883915GAMissense_Mutation1
RPUSD3MESOchr398856639885663GASilentp.R12R1
RPUSD3CESCchr398822399882239CGMissense_Mutationp.E193Q1

check buttonCopy number variation (CNV) of RPUSD3
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPUSD3
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
73141N/ABU175782RCBTB2chr1349085910-RPUSD3chr39881912-
87761BLCATCGA-UY-A78K-01ARPUSD3chr39883667-EMC3chr310019130-
87761GBMTCGA-28-5207-01ARPUSD3chr39881868-EMC3chr310005881-
87761GBMTCGA-28-5207-01ARPUSD3chr39883667-EMC3chr310005881-
78250N/ABI033517RPUSD3chr39882233+FEM1Achr194792780-
78250GBMTCGA-06-5856-01ARPUSD3chr39885149-TNRC6Cchr1776089701+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
TGCTRPUSD30.0006175735308312650.017
LIHCRPUSD30.0008010175985684030.022
BLCARPUSD30.002334373871541730.061
LUSCRPUSD30.002670021819908350.067
MESORPUSD30.01192147103723220.29
SARCRPUSD30.02606289446527280.6

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LUSCRPUSD30.004491035055215430.15
CESCRPUSD30.04405168115645141
THYMRPUSD30.03420078856230651

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source