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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: MKNK2 (NCBI Gene ID:2872)


Gene Summary

check button Gene Summary
Gene InformationGene Name: MKNK2
Gene ID: 2872
Gene Symbol

MKNK2

Gene ID

2872

Gene NameMAPK interacting serine/threonine kinase 2
SynonymsGPRK7|MNK2
Cytomap

19p13.3

Type of Geneprotein-coding
DescriptionMAP kinase-interacting serine/threonine-protein kinase 2G protein-coupled receptor kinase 7MAP kinase interacting serine/threonine kinase 2MAP kinase signal-integrating kinase 2MAPK signal-integrating kinase 2
Modification date20200313
UniProtAcc

Q9HBH9


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMKNK2

GO:0006468

protein phosphorylation

11463832

HgeneMKNK2

GO:0030097

hemopoiesis

21149447

HgeneMKNK2

GO:0035556

intracellular signal transduction

11463832

HgeneMKNK2

GO:0071243

cellular response to arsenic-containing substance

18299328



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
MKNK2(67.6 - 355.7]


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Translation Studies in PubMed

check button We searched PubMed using 'MKNK2[title] AND translation [title] AND human.'
GeneTitlePMID
MKNK2..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST0000025089620418382042033In-frame
ENST0000059160120418382042033In-frame
ENST0000025089620461842046282Frame-shift
ENST0000059160120461842046282Frame-shift
ENST0000025089620466022046690Frame-shift
ENST0000059160120466022046690Frame-shift

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST00000591601204183820420333593787981465250315
ENST000002508962041838204203337919961190465250315

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
Q9HBH92503151465ChainID=PRO_0000086336;Note=MAP kinase-interacting serine/threonine-protein kinase 2
Q9HBH92503151465ChainID=PRO_0000086336;Note=MAP kinase-interacting serine/threonine-protein kinase 2
Q9HBH925031584388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q9HBH925031584388DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q9HBH9250315299299Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315299299Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315311311Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315311311Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315314314Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315314314Metal bindingNote=Zinc;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:16216586,ECO:0000269|PubMed:16917500;Dbxref=PMID:16216586,PMID:16917500
Q9HBH9250315261261Sequence conflictNote=V->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q9HBH9250315261261Sequence conflictNote=V->L;Ontology_term=ECO:0000305;evidence=ECO:0000305
Q9HBH9250315254256HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315254256HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315259264HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315259264HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315267272HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315267272HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315273275HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315273275HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315276290HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315276290HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315312324HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3
Q9HBH9250315312324HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:2AC3


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Expression


check buttonGene expression level across TCGA pancancer
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check buttonGene expression level across GTEx pantissue
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check buttonExpression level of gene isoforms across TCGA pancancer
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check buttonExpression level of gene isoforms across GTEx pantissue
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check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
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check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LUSCMKNK2-1.004350016916450.00471185133936548
ESCAMKNK2-2.108108888036620.0068359375
HNSCMKNK2-1.430649100627751.00401621239144e-07
LUADMKNK2-3.273704210588071.05528520885174e-08
COADMKNK2-2.352476698240091.59740447998047e-05
STADMKNK2-1.438506037594576.68526627123356e-05


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue
GBMMKNK2hsa-miR-6766-3p8510.0166666666666667
OVMKNK2hsa-miR-125b-5p72-0.4476223000085370.000983975674341324
UCECMKNK2hsa-miR-125a-5p64-0.3946524064171120.0215963403964006
UCECMKNK2hsa-miR-125b-5p72-0.3805958747135220.0270830484891797


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a
SKCMMKNK2320.02488492554852730.6623321596244130.3895173434856180.3016958834552920.451261937648395

check buttonTranslation factor expression regulation through copy number variation of Translation factor
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Cancer typeGeneCoefficientPvalue

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with MKNK2 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
KICHCell metabolism geneMKNK2INPPL10.8018855161.29E-21
KICHCell metabolism geneMKNK2PYGB0.8327587811.41E-24
KICHCGCMKNK2POLG0.8188403923.59E-23
KICHIUPHARMKNK2INPPL10.8018855161.29E-21
KICHIUPHARMKNK2STK350.8213520612.04E-23
KICHKinaseMKNK2STK350.8213520612.04E-23


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
LUSCMKNK2MKNK1-1.77240583159110.000119179323433261
COADMKNK2EIF4E2-1.67678661860690.000144809484481812
LUADMKNK2MKNK1-1.648813350540250.000184346986492713
BRCAMKNK2EIF4E2-1.812996007152690.000370278590179521
STADMKNK2ATP7A-3.274647994919880.000657554250210524
LUSCMKNK2ATP7A-1.330005551272910.000679097693381554
LUADMKNK2EIF4E2-1.751690256152150.000823732994424591
KICHMKNK2MAPK11.273190025953580.000911891460418701
BRCAMKNK2MAPK3-1.619099761392630.00193136402459222
CHOLMKNK2ATP7A-1.945312708755760.00390625
CHOLMKNK2MAPK3-1.540681934246760.00390625
KIRPMKNK2MKNK1-1.835506481513090.00608485564589501
KICHMKNK2EIF4G1-1.466560811507430.00612920522689819
HNSCMKNK2ATP7A-3.966936587315390.00965754519575058
ESCAMKNK2MAPK1-1.177554743240530.0185546875
BRCAMKNK2MAPK1-1.679548752191510.0427276834041307
KICHMKNK2ATP7A2.042802525490231.0073184967041e-05
KIRCMKNK2EIF4E2-4.194730408955771.04336657477644e-05
BRCAMKNK2MAPK14-1.69281314807611.08867679255958e-06
PRADMKNK2MAPK141.202738509659862.06740855708439e-05
KIRCMKNK2ATF4-2.050040134513812.37769366427877e-11
KIRCMKNK2MKNK1-1.361554318286844.53899662243056e-11
COADMKNK2MAPK3-1.171732831463525.66244125366212e-07
KICHMKNK2EIF4E1.616752105626716.55651092529297e-06


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with MKNK2
EIF4G1, MAPK1, ESR2, MAPK14, RPL7A, ELAVL1, RBX1, VHL, CUL2, VBP1, MAPK8, CSTF2, MIF, RBM4, VCL, BAG6, SYMPK, KHSRP, NOLC1, WDR46, USP15, TRAP1, CELF1, NUDT21, WWP2, EXOC3, RAB11FIP2, PLXNA3, HAUS7, ADCK1, RBM26, BHLHE41, ZCCHC6, ZMYM1, CD99L2, MRRF, TICAM1, RICTOR, TRIM25, CUL4B, MESDC2, PSMA1, DDX58,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
MKNK2chr192042040GAsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
MKNK2BRCAchr1920508232050823GTMissense_Mutationp.Q10K4
MKNK2SKCMchr1920411592041159GASilentp.P330P3
MKNK2SKCMchr1920411602041160GAMissense_Mutationp.P330L3
MKNK2BRCAchr1920411442041144GTSilentp.A3353
MKNK2SKCMchr1920378132037813GASilentp.F390F3
MKNK2ESCAchr1920411332041133CGMissense_Mutationp.C339S3
MKNK2PAADchr1920431572043157GASilentp.D153D3
MKNK2SKCMchr1920435092043509CTMissense_Mutationp.G138R2
MKNK2STADchr1920435452043545CAMissense_Mutationp.V126F2
MKNK2UCECchr1920377572037757GAMissense_Mutationp.T409I2
MKNK2LIHCchr1920396572039657G-Frame_Shift_Delp.A451fs2
MKNK2UCECchr1920410472041047CTMissense_Mutationp.V368I2
MKNK2STADchr1920397372039737CTMissense_Mutationp.V425I2
MKNK2ESCAchr1920466582046658TASilentp.L28L2
MKNK2UCECchr1920410972041097CTMissense_Mutationp.R351H2
MKNK2LGGchr1920435192043519GASilent2
MKNK2HNSCchr1920378292037829CASplice_Site2
MKNK2ESCAchr1920463902046390CTMissense_Mutationp.D73N2
MKNK2SKCMchr1920401602040160GAMissense_Mutationp.T376I2
MKNK2STADchr1920431412043141ACMissense_Mutation2
MKNK2HNSCchr1920419852041985CGMissense_Mutationp.E267Q2
MKNK2ESCAchr1920411332041133CGMissense_Mutation2
MKNK2STADchr1920431412043141ACMissense_Mutationp.F159V2
MKNK2KIRCchr1920431462043146ATMissense_Mutationp.L157Q2
MKNK2KIRCchr1920410902041090GTSilentp.A353A2
MKNK2LIHCchr1920396622039662T-Frame_Shift_Delp.R450fs2
MKNK2PAADchr1920431572043157GASilent2
MKNK2STADchr1920463912046391GASilentp.T72T2
MKNK2THYMchr1920427952042795CTMissense_Mutation2
MKNK2BLCAchr1920425102042510CTSilentp.V222V2
MKNK2SKCMchr1920435082043508CTMissense_Mutationp.G138E2
MKNK2STADchr1920410922041092CAMissense_Mutationp.A353S2
MKNK2ESCAchr1920466582046658TASilent2
MKNK2UCECchr1920396382039639-TFrame_Shift_Insp.P457fs1
MKNK2BLCAchr1920435202043520TAMissense_Mutationp.Y134F1
MKNK2KIRPchr1920418882041888CTMissense_Mutationp.C299Y1
MKNK2CESCchr1920424502042450GCMissense_Mutationp.I242M1
MKNK2LIHCchr1920426312042631T-Frame_Shift_Delp.N210fs1
MKNK2ESCAchr1920424942042494CTMissense_Mutationp.D228N1
MKNK2PAADchr1920410732041073GAMissense_Mutationp.A359V1
MKNK2BLCAchr1920431382043138CTMissense_Mutationp.E160K1
MKNK2LGGchr1920435192043519GASilentp.Y134Y1
MKNK2COADchr1920401442040144CTMissense_Mutationp.M381I1
MKNK2STADchr1920435002043500ATSplice_Site.1
MKNK2ESCAchr1920377622037762GTSilentp.V407V1
MKNK2PRADchr1920435672043567CTSilentp.Q118Q1
MKNK2BLCAchr1920431532043153ATMissense_Mutationp.F155I1
MKNK2LGGchr1920396752039675CTSilentp.A445A1
MKNK2COADchr1920462832046283CTSplice_Site.1
MKNK2LIHCchr1920410682041068G-Frame_Shift_Delp.Q361fs1
MKNK2SARCchr1920396802039680GTMissense_Mutation1
MKNK2DLBCchr1920419112041911GASilentp.G291G1
MKNK2LIHCchr1920435412043541A-Frame_Shift_Delp.F127fs1
MKNK2STADchr1920466172046617CTMissense_Mutationp.C42Y1
MKNK2HNSCchr1920431562043156GAMissense_Mutation1
MKNK2SARCchr1920426382042638GTMissense_Mutation1
MKNK2SARCchr1920464932046493GTMissense_Mutation1
MKNK2LIHCchr1920419182041918AGMissense_Mutation1
MKNK2LIHCchr1920397472039748-TTFrame_Shift_Insp.R421fs1
MKNK2SKCMchr1920397412039741CTSilentp.Q423Q1
MKNK2STADchr1920466212046621GANonsense_Mutationp.Q41*1
MKNK2SARCchr1920419862041986GASilent1
MKNK2CESCchr1920397142039717GCGT-Frame_Shift_Del1
MKNK2LIHCchr1920427892042789CTMissense_Mutationp.A192T1
MKNK2LUADchr1920396452039645CTSilentp.S455S1
MKNK2STADchr1920435002043500ATSplice_Sitep.R140_splice1
MKNK2HNSCchr1920431562043156GAMissense_Mutationp.R154C1
MKNK2LIHCchr1920420232042023GAMissense_Mutationp.A254V1
MKNK2SARCchr1920508712050871GTMissense_Mutation1
MKNK2CESCchr1920424322042432GCSilent1
MKNK2ESCAchr1920466582046658TASilentp.L281
MKNK2LUADchr1920435242043524GTMissense_Mutationp.L133M1
MKNK2STADchr1920410382041038CTSplice_Sitep.G370_splice1
MKNK2BLCAchr1920435202043520TAMissense_Mutation1
MKNK2CESCchr1920424502042450GCMissense_Mutation1
MKNK2LIHCchr1920420242042024CTMissense_Mutationp.A254T1
MKNK2SARCchr1920426382042638GTMissense_Mutationp.P208T1
MKNK2LUSCchr1920431722043172GASilentp.F148F1
MKNK2TGCTchr1920465962046596CGMissense_Mutation1
MKNK2BLCAchr1920431382043138CTMissense_Mutation1
MKNK2CESCchr1920410442041044GANonsense_Mutation1
MKNK2LIHCchr1920419182041918AGMissense_Mutationp.L289P1
MKNK2SARCchr1920419862041986GASilentp.S266S1
MKNK2ESCAchr1920377622037762GTMissense_Mutation1
MKNK2LUSCchr1920411272041127GCMissense_Mutationp.A341G1
MKNK2STADchr1920410382041038CTSplice_Site.1
MKNK2THCAchr1920397292039729GTSilentp.V427V1
MKNK2BLCAchr1920431532043153ATMissense_Mutation1
MKNK2CESCchr1920410442041044GANonsense_Mutationp.Q369*1
MKNK2SARCchr1920419862041986GASilentp.S2661
MKNK2ESCAchr1920463902046390CTMissense_Mutation1
MKNK2KIRCchr1920411522041152CTMissense_Mutationp.D333N1
MKNK2CESCchr1920424322042432GCSilentp.L2481
MKNK2LIHCchr1920401692040169G-Frame_Shift_Delp.P373fs1

check buttonCopy number variation (CNV) of MKNK2
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across MKNK2
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
77950Non-CancerERR188200BTBD2chr192013546-MKNK2chr192043581-
77950Non-CancerERR188200BTBD2chr192015296-MKNK2chr192043581-
77950N/ABM145378CACNA2D3chr354576003+MKNK2chr192037470+
77950ESCATCGA-L5-A891ELLchr1918569014-MKNK2chr192046690-
77950ESCATCGA-L5-A891ELLchr1918569015-MKNK2chr192046690-
77950Non-CancerERR315460HEATR1chr1236713872-MKNK2chr192037806-
77950N/ABE720244KCNK1chr1233802576+MKNK2chr192046405+
102739OVTCGA-09-1666MKNK2chr192050799-AP3D1chr192102267-
102739OVTCGA-09-1666-01AMKNK2chr192050800-AP3D1chr192102267-
78778STADTCGA-BR-A4IY-01AMKNK2chr192037605-CNDP2chr1872180929+
100130N/ABQ027252MKNK2chr192037658+CRKchr171335764+
86725BRCATCGA-EW-A1PA-01AMKNK2chr192046185-FAM151Achr155076228-
77950N/ABU674802MKNK2chr192037548+MKNK2chr192037605-
101825N/AAI096463MKNK2chr192037862+ORC3chr688306179-
54111N/ABM148315MKNK2chr192037659+PANK4chr12439977+
81649LAMLTCGA-AB-2897-03AMKNK2chr192041839-RNF126chr19652884-
89828N/ABF765876MKNK2chr192038867+TOR1AIP2chr1179846934-
98677N/ABM765288MKNK2chr192038030-UBAC2chr13100037910+
102392ESCATCGA-L5-A8NRMKNK2chr192050799-WIZchr1915538344-
100444BRCATCGA-BH-A1FD-01AMKNK2chr192046366-ZFR2chr193852612-
77950Non-CancerERR315404OAZ1chr192269743+MKNK2chr192043581-
77951N/ABQ351516RPS4Y1chrY2733263+MKNK2chr192037878+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
SARCMKNK20.01103227775420270.31
BLCAMKNK20.01161320162293150.31
READMKNK20.01837775491383650.48
LIHCMKNK20.04218973926590841

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
GBMMKNK20.01711766016522990.53
LAMLMKNK20.04688337524766631
OVMKNK20.004256618093403150.14
SARCMKNK20.01145211405305830.37

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source