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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: RPL26 (NCBI Gene ID:6154)


Gene Summary

check button Gene Summary
Gene InformationGene Name: RPL26
Gene ID: 6154
Gene Symbol

RPL26

Gene ID

6154

Gene Nameribosomal protein L26
SynonymsDBA11|L26
Cytomap

17p13.1

Type of Geneprotein-coding
Description60S ribosomal protein L26large ribosomal subunit protein uL24
Modification date20200313
UniProtAcc

P61254


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0005840Ribosome
GO:0045727Positive regulation of translation
GO:0002181Cytoplasmic translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneRPL26

GO:0071480

cellular response to gamma radiation

16213212



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'RPL26[title] AND translation [title] AND human.'
GeneTitlePMID
RPL26p73 expression is regulated by ribosomal protein RPL26 through mRNA translation and protein stability27825141


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
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check buttonExpression level of gene isoforms across TCGA pancancer
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check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
BLCARPL26-1.814668853679270.0016937255859375
STADRPL261.637510448014730.00256496202200651
KIRPRPL26-3.309752120532310.00275033386424184
PRADRPL261.09035570831510.0446353080924363


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with RPL26 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
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Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
DLBCCGCRPL26NACA0.8219613628.00E-13
DLBCTSGRPL26GNB2L10.8534016211.31E-14
THYMEpifactorRPL26FBL0.8167186221.96E-30
THYMEpifactorRPL26C17orf490.8333117261.12E-32
THYMTSGRPL26GNB2L10.8168817361.87E-30
UCSEpifactorRPL26FBL0.8167186221.96E-30
UCSEpifactorRPL26C17orf490.8333117261.12E-32
UCSTSGRPL26GNB2L10.8168817361.87E-30
UVMCell metabolism geneRPL26TOMM200.8079102431.35E-19
UVMCell metabolism geneRPL26TIMM90.8394243452.36E-22
UVMTSGRPL26RBMX0.810101229.04E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPRPL26RPL18A-1.516513928088850.00016188295558095
KICHRPL26RPS27A1.753966937859560.000187873840332031
KIRPRPL26RPS16-1.359570436175170.00019507110118866
COADRPL26RPS31.487303751430140.000411599874496461
KIRPRPL26RPS11-1.018615705651030.00105937570333481
LIHCRPL26RPL8-4.845882849745580.00110314154326131
PRADRPL26RPL18A1.406001757484990.00205137828390396
KICHRPL26RPL191.369011828940890.00250792503356934
KICHRPL26RPS121.269973817584310.00308787822723389
LUADRPL26RPL19-1.313980266157250.00993159558412698
THCARPL26RPS16-6.163227981565770.0115764821363307
BLCARPL26RPS12-1.478046734404210.0204124450683594
BLCARPL26RPS27A-1.047474700691880.0258216857910156
HNSCRPL26RPS3-4.735058190951350.0273726439852453
COADRPL26RPS111.353075489982040.0312207043170929
LUSCRPL26RPL19-2.146698895166660.044366810398747
KIRCRPL26RPL19-2.734852712766761.33980982873695e-10
BRCARPL26RPS12-4.912393274782441.85340619742495e-09
KIRPRPL26RPL37-1.174216219471392.26888805627823e-05
KIRCRPL26RPL35-1.064752380593922.72286325678163e-08
KIRCRPL26RPL8-1.182524599717735.64962994208288e-07
KIRPRPL26RPL8-1.530036923501196.0301274061203e-05
KIRCRPL26RPS16-1.661498698893847.8509870430991e-09
BRCARPL26RPS27A-4.285121482004247.8788217967112e-14
KIRCRPL26RPL37-2.871988220584648.03913394748564e-12
KIRPRPL26RPL35-1.529811019754969.0546440333128e-05
KIRCRPL26RPS3-1.295608479263879.05905681935088e-10
KIRCRPL26RPL18A-4.430793049608439.2516163152192e-11


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with RPL26
PSTPIP1, MAGEB2, DDX56, HNRNPR, MDM2, USP53, NOP56, EBNA-LP, MTOR, RICTOR, TP53, ARRB2, SIRT7, CUL4A, CDK2, CAND1, CBX5, MAGOH, EIF4A3, FN1, VCAM1, UBL4A, ITGA4, PELP1, PAN2, IGSF8, ICAM1, APLP2, TARDBP, RPL17, DARS, EEF1E1, RPL13, RPL15, RPL21, RPL7A, RPL35, RPL36, CEP76, TUBG1, TUBGCP3, RNF2, LUZP4, DHX8, THAP7, RPS8, HNRNPA1, ZNF317, RPS6KB2, RPL14, ATP1B1, ATP1B2, ATP1B3, BRIX1, RPL10, RPL18, RPL19, RPL22, RPL23, RPL24, RPL3, RPL38, RPL4, RPL8, RPS13, RPS18, RPS3, RPL27, RPL30, RPL34, RPL37A, RPL5, RPL6, RPLP0, RPLP2, RPS11, RPS14, RPS15, RPS16, RPS19, RPS25, LOC101929876, RPS26, RPS29, RPS3A, RPS4X, RPS5, RPS6, RPS9, SFN, HIST1H3E, TRIM29, MCM2, Ksr1, CRBN, CDC14B, E4F1, ZC3HAV1, RPL7, SNRNP70, COX15, SDHA, TRIM25, FBXO7, BMP4, WDR77, PCBP1, DIMT1, KRAS, UBE2M, PRPF8, EFTUD2, AAR2, PIH1D1, CHD3, CHD4, LARP7, RNF31, TNF, RIOK1, HEXIM1, MEPCE, DPF2, RECQL4, REST, Prkaa1, Prkab1, FBL, GRWD1, ACTC1, PHB, NR2C2, PPP1CC, CTCF, SEC61A1, RPS2, VRK1, HIST1H4A, ITFG1, HMGB1, NFX1, WWP2, Dnajc17, SOX2, TEX101, CMTR1, ARIH2, PLEKHA4, FANCD2, NGB, HCVgp1, ZC3H18, PTPN6, KCNK16, NFATC2IP, E, M, nsp13, nsp14, nsp4, nsp5, nsp6, ORF3a, ORF6, ORF7a, ORF7b, ORF8, CIT, ANLN, AURKB, CHMP4B, CHMP4C, ECT2, KIF14, MAD2L2, KIF20A, KIF23, PRC1, BCAR1, LRRC59, PTEN, N, Apc2, FBP1, MKRN1, DNAJB7, PARK2, UFL1, DDRGK1, TRIM37, ATG3, USP15, UBQLN1, FZR1, NAA40, ZBTB2, YBX3, HIST1H1B, ZCCHC9, MRPS33, MRPL2, CNBP, RPL13A, SF3B2, SRPK3, RBM28, PTCD1, STAU2, MRPL47, RSL1D1, GZF1, ZCCHC3, POP1, RPL32, MRPL9, MRPL1, MOV10, MRPS7, GLYR1, PRR3, FARS2, MRPS2, MRPS5, GNL2, LARP1B, RPL31, ZNF189, RBM4, WHSC1, MRPS11, MRPL50, RBM19, MRPL13, ZC3H8, RPF1, MRPL30, HIST1H1C, MKRN4P, CCDC137, MRPS30, RPS27A, MRPL28, STAU1, MRPL20, TRIM26, MRPL15, SRSF12, SRSF6, DKC1, MRPL45, EBNA1BP2, PRDM15, ZNF512, MRPS35, ZNF574, HIST1H1A, ZCRB1, UPF1, DAP3, ZNF354A, KRI1, MRPS23, RPL26L1, ZNF777, ZNF184, RPL36AL, NOP16, PURB, LARP1, GADD45GIP1, HP1BP3, H2AFY2, MRPS31, ADARB1, ZBTB11, DDX31, MRPL16, DDX27, H2AFX, ZNF275, TOE1, SF3B1, MRPL49, MRPS10, DDX21, IMP4, KRR1, MRPL32, CCDC140, PRKRA, YBX1, MRPL51, MTERF3, NSA2, MRPL24, ICT1, KIAA0020, NGRN, CMSS1, REXO4, TRIM71, NOP2, MRPS18C, SRSF5, ZNF22, MRPL22, RPL11, HIST1H1E, LIN28A, ZNF346, FGFBP1, ZC3H3, MYBBP1A, RPSA, HIST1H2AE, RPSAP58, BTF3, EIF4ENIF1, Cpsf6, NLRP7, RCHY1, CCNF, KLF12, KLF16, KLF4,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
RPL26chr178280658CCTTCMicrosatelliteLikely_benignnot_provided
RPL26chr178280936TAsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178280943CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL26chr178280961TCsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL26chr178280978GAsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178280993TCsingle_nucleotide_variantBenignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178281059ACsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178283164GAsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL26chr178283168CTsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178283259GCsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178283379CGsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178283486GCsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285200TCsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285249CACDeletionBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285249CAACDeletionBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285273TAsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285398TCsingle_nucleotide_variantBenignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285452GCsingle_nucleotide_variantLikely_benignnot_providedSO:0001627|intron_variantSO:0001627|intron_variant
RPL26chr178285476CTsingle_nucleotide_variantUncertain_significanceDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178285501TCsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001583|missense_variantSO:0001583|missense_variant
RPL26chr178285507TTCTDeletionPathogenicDiamond-Blackfan_anemia_11SO:0001589|frameshift_variantSO:0001589|frameshift_variant
RPL26chr178285533GAsingle_nucleotide_variantBenignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178285605AGsingle_nucleotide_variantLikely_benignDiamond-Blackfan_anemiaSO:0001819|synonymous_variantSO:0001819|synonymous_variant
RPL26chr178285647TAATDeletionLikely_benignnot_specifiedSO:0001627|intron_variantSO:0001627|intron_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
RPL26BRCAchr1782809438280943CTMissense_Mutationp.R126H4
RPL26KIRPchr1782832238283223ACMissense_Mutationp.I67S3
RPL26BRCAchr1782854808285480CTMissense_Mutationp.R50Q3
RPL26ESCAchr1782809458280945ACSilentp.S125S2
RPL26STADchr1782809498280949TCMissense_Mutationp.K124R2
RPL26TGCTchr1782809588280958CAMissense_Mutationp.R121L2
RPL26ESCAchr1782809458280945ACSilent2
RPL26TGCTchr1782809588280958CAMissense_Mutation1
RPL26BLCAchr1782832388283238TCMissense_Mutation1
RPL26THYMchr1782855068285506CTSilent1
RPL26BLCAchr1782809088280908CGMissense_Mutation1
RPL26HNSCchr1782855208285520CGMissense_Mutation1
RPL26THYMchr1782809768280976CTMissense_Mutation1
RPL26BLCAchr1782855528285552CTMissense_Mutation1
RPL26HNSCchr1782855208285520CGMissense_Mutationp.E37Q1
RPL26THYMchr1782855068285506CTSilentp.K41K1
RPL26BLCAchr1782809088280908CGMissense_Mutationp.E138Q1
RPL26BLCAchr1782855538285553GCMissense_Mutationp.R26G1
RPL26KIRPchr1782832238283223ACMissense_Mutation1
RPL26BLCAchr1782855528285552CTMissense_Mutationp.R26Q1
RPL26LIHCchr1782854948285494TCSilent1
RPL26SARCchr1782809218280921GTSilent1
RPL26SARCchr1782809258280925TCMissense_Mutationp.K132R1
RPL26COADchr1782809628280962CTMissense_Mutationp.E120K1
RPL26ESCAchr1782809458280945ACSilentp.S1251
RPL26BLCAchr1782855538285553GCMissense_Mutation1

check buttonCopy number variation (CNV) of RPL26
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across RPL26
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
77825N/ABI491313ANAPC5chr12121833298-RPL26chr178280839+
77825N/ABG230395DOCK10chr2225784973+RPL26chr178280841+
77825N/AEC512967FAM186Achr1250759867-RPL26chr178280841+
77825N/ABF812918HOXB9chr1746700001+RPL26chr178286512-
77825PRADTCGA-CH-5761-01AMAPTchr1744039836+RPL26chr178285633-
77825COADTCGA-AA-3850MIER2chr19325634-RPL26chr178285633-
77825OVTCGA-29-1697-01AMIER2chr19325635-RPL26chr178285633-
77825N/AEC581159NUP50chr2245583427+RPL26chr178280848+
77825N/AAA226614OTOGLchr1280496635+RPL26chr178280841+
77825N/AAA230225OTOGLchr1280496635+RPL26chr178280839+
100818N/ABP281133RPL26chr178280925-ATXN7chr363927528-
101912LUADTCGA-55-8207-01ARPL26chr178285461-CYSTM1chr5139574031+
100891N/ABP228087RPL26chr178280839-KIAA1549Lchr1133419485-
76316N/AEC486795RPL26chr178280949+LINC01006chr7156426002-
101074N/AAW020253RPL26chr178280839-MACROD2chr2014932749-
82394N/ABP226166RPL26chr178280841-METTL15chr1128301458+
86345N/AAA483495RPL26chr178280841-OTOGLchr1280496632-
86345N/ABG032781RPL26chr178280839-OTOGLchr1280496635-
86345N/ABM013521RPL26chr178280841-OTOGLchr1280496635-
103050N/ADN916015RPL26chr178280840-PCDH15chr1056104655+
90605N/ABP283575RPL26chr178280839-PCDH9chr1367060769+
77825N/AAA558624RPL26chr178280859-RPL26chr178280833+
77825N/AEC455705RPL26chr178285498+RPL26chr178280977-
96487N/AEC556734RPL26chr178280901+RPS29chr1450050346-
99241N/ABI855828RPL26chr178107437-WHSC1chr41959196-
100954N/ABI493240RPL26chr178280843-ZFAND6chr1580358653+
77838N/AEC499282RPS29chr1450050356+RPL26chr178280903-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
KIRCRPL260.004375663411071880.12
BRCARPL260.0224973486609350.61
THYMRPL260.02814228306415890.73
SARCRPL260.032230182361990.81

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LGGRPL260.03044946922326351

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C1260899Anemia, Diamond-Blackfan2GENOMICS_ENGLAND;ORPHANET
C2931850Aase Smith syndrome 21ORPHANET
C3554042DIAMOND-BLACKFAN ANEMIA 111CTD_human;GENOMICS_ENGLAND