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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: TYMS (NCBI Gene ID:7298)


Gene Summary

check button Gene Summary
Gene InformationGene Name: TYMS
Gene ID: 7298
Gene Symbol

TYMS

Gene ID

7298

Gene Namethymidylate synthetase
SynonymsHST422|TMS|TS
Cytomap

18p11.32

Type of Geneprotein-coding
Descriptionthymidylate synthaseTSase
Modification date20200322
UniProtAcc

P04818


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0017148Negative regulation of translation
GO:0006417Regulation of translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneTYMS

GO:0006231

dTMP biosynthetic process

8845352|11278511|15093541

HgeneTYMS

GO:0017148

negative regulation of translation

1924359

HgeneTYMS

GO:0035999

tetrahydrofolate interconversion

15093541



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25
TYMS>1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'TYMS[title] AND translation [title] AND human.'
GeneTitlePMID
TYMS..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST00000323274669071669173In-frame
ENST00000323274670691670867Frame-shift
ENST00000323274671379671451In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST000003232746690716691731679594695313151185
ENST000003232746713796714511679872943313244268

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
P048182442682313ChainID=PRO_0000140901;Note=Thymidylate synthase
P048181511852313ChainID=PRO_0000140901;Note=Thymidylate synthase
P04818151185175176Nucleotide bindingNote=dUMP%3B shared with dimeric partner;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P0A884
P04818244268256258Nucleotide bindingNote=dUMP;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P0A884
P0481815118569151Alternative sequenceID=VSP_047745;Note=In isoform 3. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12706868;Dbxref=PMID:12706868
P04818151185152185Alternative sequenceID=VSP_047746;Note=In isoform 2. Missing;Ontology_term=ECO:0000303;evidence=ECO:0000303|PubMed:12706868;Dbxref=PMID:12706868
P04818151185149151Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818151185156158Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3EHI
P04818151185160170HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818151185178181Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818151185184186HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818244268244258Beta strandOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818244268259261HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7
P04818244268262268HelixOntology_term=ECO:0000244;evidence=ECO:0000244|PDB:3ED7


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LUADTYMS-4.538460130820463.59910232594763e-11
KIRPTYMS-4.749167180666955.12227416038514e-08
THCATYMS-1.403961520112296.91106419786075e-09
BRCATYMS-3.844876719356588.59195631465592e-27
LIHCTYMS-2.698211170517169.87002535347663e-07


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue
DLBCTYMShsa-miR-501-5p900.3063135985198890.0366874988936572


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
LGGTYMS0.0805397170.008655671
LIHCTYMS0.0542854770.039130488

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with TYMS (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
ACCCell metabolism geneTYMSTK10.8019879396.59E-19
ACCCell metabolism geneTYMSRRM20.9008992231.23E-29
ACCCGCTYMSBUB1B0.8616236572.20E-24
ACCEpifactorTYMSAURKA0.8010487367.76E-19
ACCEpifactorTYMSRAD54L0.8109674561.32E-19
ACCEpifactorTYMSGSG20.8124932189.99E-20
ACCEpifactorTYMSUBE2T0.814519776.85E-20
ACCEpifactorTYMSCENPA0.836292218.63E-22
ACCEpifactorTYMSUHRF10.8378680546.14E-22
ACCEpifactorTYMSHJURP0.8451851161.20E-22
ACCEpifactorTYMSCDK10.8556533539.94E-24
ACCEpifactorTYMSAURKB0.8615057082.26E-24
ACCEpifactorTYMSBUB10.8631197561.49E-24
ACCEpifactorTYMSPBK0.8662746756.45E-25
ACCEpifactorTYMSTOP2A0.8666565665.82E-25
ACCEpifactorTYMSRAD510.8884725949.15E-28
ACCIUPHARTYMSAURKA0.8010487367.76E-19
ACCIUPHARTYMSNEK20.8124723331.00E-19
ACCIUPHARTYMSBIRC50.8139701467.59E-20
ACCIUPHARTYMSKIF110.8377566616.29E-22
ACCIUPHARTYMSPKMYT10.8378665536.14E-22
ACCIUPHARTYMSMELK0.8503381313.60E-23
ACCIUPHARTYMSCDK10.8556533539.94E-24
ACCIUPHARTYMSAURKB0.8615057082.26E-24
ACCIUPHARTYMSBUB1B0.8616236572.20E-24
ACCIUPHARTYMSBUB10.8631197561.49E-24
ACCIUPHARTYMSPBK0.8662746756.45E-25
ACCIUPHARTYMSTOP2A0.8666565665.82E-25
ACCIUPHARTYMSPLK10.8797543651.40E-26
ACCIUPHARTYMSRRM20.9008992231.23E-29
ACCKinaseTYMSAURKA0.8010487367.76E-19
ACCKinaseTYMSNEK20.8124723331.00E-19
ACCKinaseTYMSGSG20.8124932189.99E-20
ACCKinaseTYMSPKMYT10.8378665536.14E-22
ACCKinaseTYMSMELK0.8503381313.60E-23
ACCKinaseTYMSCDK10.8556533539.94E-24
ACCKinaseTYMSAURKB0.8615057082.26E-24
ACCKinaseTYMSBUB1B0.8616236572.20E-24
ACCKinaseTYMSBUB10.8631197561.49E-24
ACCKinaseTYMSPBK0.8662746756.45E-25
ACCKinaseTYMSPLK10.8797543651.40E-26
ACCTFTYMSCENPA0.836292218.63E-22
ACCTFTYMSE2F20.864508351.03E-24
ACCTFTYMSFOXM10.8652438098.50E-25
ACCTFTYMSMYBL20.8705687762.00E-25
ACCTSGTYMSE2F20.864508351.03E-24
ACCTSGTYMSPLK10.8797543651.40E-26
BRCAEpifactorTYMSBUB10.8057734786.25E-279
BRCAEpifactorTYMSCENPA0.8082188016.40E-282
BRCAEpifactorTYMSHJURP0.8146553785.33E-290
BRCAEpifactorTYMSAURKB0.8227311971.35E-300
BRCAEpifactorTYMSRAD510.8227966571.11E-300
BRCAEpifactorTYMSRAD54L0.8496027470
BRCAIUPHARTYMSBUB10.8057734786.25E-279
BRCAIUPHARTYMSMELK0.8087710251.33E-282
BRCAIUPHARTYMSPLK10.8163982783.05E-292
BRCAIUPHARTYMSAURKB0.8227311971.35E-300
BRCAKinaseTYMSBUB10.8057734786.25E-279
BRCAKinaseTYMSMELK0.8087710251.33E-282
BRCAKinaseTYMSPLK10.8163982783.05E-292
BRCAKinaseTYMSAURKB0.8227311971.35E-300
BRCATFTYMSE2F20.8039944978.79E-277
BRCATFTYMSCENPA0.8082188016.40E-282
BRCATFTYMSFOXM10.8278404631.40E-307
BRCATSGTYMSE2F20.8039944978.79E-277
BRCATSGTYMSPLK10.8163982783.05E-292
CHOLCell metabolism geneTYMSTK10.8194107885.92E-12
CHOLCGCTYMSEZH20.8006865634.04E-11
CHOLCGCTYMSBUB1B0.8044951622.78E-11
CHOLEpifactorTYMSHJURP0.80015544.25E-11
CHOLEpifactorTYMSEZH20.8006865634.04E-11
CHOLEpifactorTYMSCHAF1B0.8040310512.91E-11
CHOLEpifactorTYMSAURKB0.8059824932.39E-11
CHOLEpifactorTYMSCENPA0.810415491.53E-11
CHOLEpifactorTYMSRAD54L0.8105037591.51E-11
CHOLEpifactorTYMSASF1B0.8120497321.29E-11
CHOLEpifactorTYMSRAD510.823670593.71E-12
CHOLEpifactorTYMSCDC60.8244233453.41E-12
CHOLIUPHARTYMSEZH20.8006865634.04E-11
CHOLIUPHARTYMSBUB1B0.8044951622.78E-11
CHOLIUPHARTYMSAURKB0.8059824932.39E-11
CHOLKinaseTYMSBUB1B0.8044951622.78E-11
CHOLKinaseTYMSAURKB0.8059824932.39E-11
CHOLTFTYMSFOXM10.8018603553.60E-11
CHOLTFTYMSCENPA0.810415491.53E-11
CHOLTSGTYMSEZH20.8006865634.04E-11
GBMCell metabolism geneTYMSTK10.8152417353.50E-42
GBMEpifactorTYMSAURKB0.8015927748.02E-40
GBMEpifactorTYMSCENPA0.8103820072.55E-41
GBMEpifactorTYMSAURKA0.8126426991.02E-41
GBMEpifactorTYMSRAD510.8212801692.74E-43
GBMEpifactorTYMSASF1B0.8550669422.31E-50
GBMIUPHARTYMSAURKB0.8015927748.02E-40
GBMIUPHARTYMSAURKA0.8126426991.02E-41
GBMIUPHARTYMSBIRC50.8183606499.50E-43
GBMIUPHARTYMSMELK0.829391767.63E-45
GBMKinaseTYMSAURKB0.8015927748.02E-40
GBMKinaseTYMSAURKA0.8126426991.02E-41
GBMKinaseTYMSMELK0.829391767.63E-45
GBMTFTYMSCENPA0.8103820072.55E-41
LAMLCell metabolism geneTYMSRRM20.8043425051.65E-40
LAMLCGCTYMSFEN10.8236006365.66E-44
LAMLEpifactorTYMSCHAF1B0.8080184633.85E-41
LAMLEpifactorTYMSRAD54L0.8388109585.07E-47
LAMLEpifactorTYMSCDC60.8565632445.25E-51
LAMLEpifactorTYMSRAD510.8633130161.15E-52
LAMLEpifactorTYMSPCNA0.8641899946.92E-53
LAMLIUPHARTYMSRRM20.8043425051.65E-40
LAMLTFTYMSFOXM10.8402788472.48E-47
LGGCell metabolism geneTYMSTK10.8455214225.37E-146
LGGEpifactorTYMSASF1B0.8056935793.54E-122
LGGTFTYMSE2F70.8200177024.64E-130
LGGTFTYMSE2F10.8233997775.05E-132
LGGTSGTYMSE2F10.8233997775.05E-132
LIHCEpifactorTYMSRAD510.8017061943.89E-96
LIHCEpifactorTYMSRAD54L0.8043105273.25E-97
LIHCEpifactorTYMSHELLS0.8080309578.78E-99
LUADCell metabolism geneTYMSHMMR0.8224054649.96E-143
LUADCell metabolism geneTYMSRRM20.8569508232.29E-167
LUADCGCTYMSBRIP10.8119782222.51E-136
LUADCGCTYMSFEN10.8148890524.51E-138
LUADCGCTYMSSTIL0.8207455421.11E-141
LUADCGCTYMSBUB1B0.8533482331.66E-164
LUADEpifactorTYMSAURKA0.8001815891.50E-129
LUADEpifactorTYMSUBE2T0.8061915146.06E-133
LUADEpifactorTYMSCHEK10.8089927831.44E-134
LUADEpifactorTYMSUHRF10.8106506521.54E-135
LUADEpifactorTYMSHELLS0.8194584747.07E-141
LUADEpifactorTYMSAURKB0.8313451541.47E-148
LUADEpifactorTYMSCDK10.8413207521.73E-155
LUADEpifactorTYMSASF1B0.8471991958.46E-160
LUADEpifactorTYMSTOP2A0.8496603531.17E-161
LUADEpifactorTYMSCENPA0.8499469227.07E-162
LUADEpifactorTYMSTTK0.8505179592.59E-162
LUADEpifactorTYMSRAD510.8527141045.18E-164
LUADEpifactorTYMSHJURP0.8527929914.50E-164
LUADEpifactorTYMSRAD54L0.8542015313.54E-165
LUADEpifactorTYMSBUB10.8554922943.36E-166
LUADEpifactorTYMSCDC60.8588420576.70E-169
LUADIUPHARTYMSAURKA0.8001815891.50E-129
LUADIUPHARTYMSCHEK10.8089927831.44E-134
LUADIUPHARTYMSPLK40.8291377784.34E-147
LUADIUPHARTYMSNEK20.8307360843.75E-148
LUADIUPHARTYMSAURKB0.8313451541.47E-148
LUADIUPHARTYMSKIF110.8345248341.02E-150
LUADIUPHARTYMSBIRC50.837647456.98E-153
LUADIUPHARTYMSPLK10.8394770193.58E-154
LUADIUPHARTYMSCDK10.8413207521.73E-155
LUADIUPHARTYMSTOP2A0.8496603531.17E-161
LUADIUPHARTYMSTTK0.8505179592.59E-162
LUADIUPHARTYMSBUB1B0.8533482331.66E-164
LUADIUPHARTYMSBUB10.8554922943.36E-166
LUADIUPHARTYMSRRM20.8569508232.29E-167
LUADIUPHARTYMSMELK0.8635498848.15E-173
LUADKinaseTYMSAURKA0.8001815891.50E-129
LUADKinaseTYMSCHEK10.8089927831.44E-134
LUADKinaseTYMSPLK40.8291377784.34E-147
LUADKinaseTYMSNEK20.8307360843.75E-148
LUADKinaseTYMSAURKB0.8313451541.47E-148
LUADKinaseTYMSPLK10.8394770193.58E-154
LUADKinaseTYMSCDK10.8413207521.73E-155
LUADKinaseTYMSTTK0.8505179592.59E-162
LUADKinaseTYMSBUB1B0.8533482331.66E-164
LUADKinaseTYMSBUB10.8554922943.36E-166
LUADKinaseTYMSMELK0.8635498848.15E-173
LUADTFTYMSFOXM10.8192970458.91E-141
LUADTFTYMSMYBL20.8341102741.96E-150
LUADTFTYMSCENPA0.8499469227.07E-162
LUADTSGTYMSCHEK10.8089927831.44E-134
LUADTSGTYMSPLK10.8394770193.58E-154
LUSCCGCTYMSBUB1B0.8013898234.43E-125
LUSCEpifactorTYMSASF1B0.8038285192.13E-126
LUSCEpifactorTYMSCENPA0.8053184163.27E-127
LUSCEpifactorTYMSRAD54L0.8059442311.48E-127
LUSCEpifactorTYMSAURKB0.8068211614.85E-128
LUSCEpifactorTYMSTOP2A0.8103029375.47E-130
LUSCEpifactorTYMSBUB10.8133998539.37E-132
LUSCEpifactorTYMSCDC60.817031077.21E-134
LUSCIUPHARTYMSBIRC50.8000667652.26E-124
LUSCIUPHARTYMSBUB1B0.8013898234.43E-125
LUSCIUPHARTYMSAURKB0.8068211614.85E-128
LUSCIUPHARTYMSTOP2A0.8103029375.47E-130
LUSCIUPHARTYMSBUB10.8133998539.37E-132
LUSCKinaseTYMSBUB1B0.8013898234.43E-125
LUSCKinaseTYMSAURKB0.8068211614.85E-128
LUSCKinaseTYMSBUB10.8133998539.37E-132
LUSCTFTYMSMYBL20.8026652179.11E-126
LUSCTFTYMSCENPA0.8053184163.27E-127
MESOCell metabolism geneTYMSTK10.8024022939.40E-21
MESOCell metabolism geneTYMSRRM20.8357773417.59E-24
MESOEpifactorTYMSBUB10.8081909143.02E-21
MESOEpifactorTYMSASF1B0.8088622622.65E-21
MESOEpifactorTYMSCENPA0.8251266958.67E-23
MESOEpifactorTYMSAURKB0.8431438911.27E-24
MESOEpifactorTYMSUHRF10.8514179011.52E-25
MESOEpifactorTYMSRAD54L0.8514422621.51E-25
MESOIUPHARTYMSBUB10.8081909143.02E-21
MESOIUPHARTYMSPLK10.8134903561.03E-21
MESOIUPHARTYMSPKMYT10.8240498991.10E-22
MESOIUPHARTYMSRRM20.8357773417.59E-24
MESOIUPHARTYMSBIRC50.8360426377.12E-24
MESOIUPHARTYMSAURKB0.8431438911.27E-24
MESOKinaseTYMSBUB10.8081909143.02E-21
MESOKinaseTYMSPLK10.8134903561.03E-21
MESOKinaseTYMSPKMYT10.8240498991.10E-22
MESOKinaseTYMSAURKB0.8431438911.27E-24
MESOTFTYMSCENPA0.8251266958.67E-23
MESOTFTYMSMYBL20.8368508375.88E-24
MESOTSGTYMSPLK10.8134903561.03E-21
PCPGEpifactorTYMSRAD510.8366669952.99E-50
STADEpifactorTYMSRAD510.8102983294.91E-106
STADEpifactorTYMSRAD54L0.8139526179.84E-108
TGCTCell metabolism geneTYMSVCAN0.8058596837.07E-37
TGCTCell metabolism geneTYMSGPC30.8527504582.74E-45
TGCTCGCTYMSDEK0.8137529214.01E-38
TGCTCGCTYMSID30.8226951181.31E-39
TGCTCGCTYMSGPC30.8527504582.74E-45
TGCTEpifactorTYMSDEK0.8137529214.01E-38
TGCTIUPHARTYMSTNFRSF10B0.8073382434.17E-37
TGCTIUPHARTYMSGJA10.8178799398.46E-39
TGCTIUPHARTYMSGPC30.8527504582.74E-45
TGCTTSGTYMSTNFRSF10B0.8073382434.17E-37
TGCTTSGTYMSGJA10.8178799398.46E-39
TGCTTSGTYMSGPC30.8527504582.74E-45
THCACell metabolism geneTYMSTK10.8146293095.74E-137
THCAEpifactorTYMSHELLS0.8024940616.07E-130
THCAEpifactorTYMSCDC60.829291563.53E-146
THCAEpifactorTYMSASF1B0.858748371.16E-167
THCAEpifactorTYMSUHRF10.8687405414.40E-176
THCATFTYMSE2F10.8180612654.76E-139
THCATSGTYMSE2F10.8180612654.76E-139
THYMCell metabolism geneTYMSPPP2R5D0.8032754358.91E-29
THYMCell metabolism geneTYMSSMPD30.8058647464.37E-29
THYMCell metabolism geneTYMSLBR0.8075358882.75E-29
THYMCell metabolism geneTYMSDUT0.8098773241.42E-29
THYMCell metabolism geneTYMSGNA150.8103612831.24E-29
THYMCell metabolism geneTYMSPAFAH20.8124077756.89E-30
THYMCell metabolism geneTYMSELOVL40.8135359844.97E-30
THYMCell metabolism geneTYMSPRIM20.8138863974.49E-30
THYMCell metabolism geneTYMSSEH1L0.8165993172.03E-30
THYMCell metabolism geneTYMSLCT0.8227087033.23E-31
THYMCell metabolism geneTYMSPOLE20.823785412.32E-31
THYMCell metabolism geneTYMSRRM10.8309981212.37E-32
THYMCell metabolism geneTYMSADA0.8514889251.94E-35
THYMCell metabolism geneTYMSHMMR0.8618242023.52E-37
THYMCell metabolism geneTYMSRPIA0.8705557649.20E-39
THYMCell metabolism geneTYMSACAT20.8738148932.20E-39
THYMCell metabolism geneTYMSRRM20.8952345786.05E-44
THYMCell metabolism geneTYMSTUBA1B0.9037424294.87E-46
THYMCGCTYMSCDK60.800342361.97E-28
THYMCGCTYMSBCL7A0.8003516841.97E-28
THYMCGCTYMSFANCD20.8039084057.49E-29
THYMCGCTYMSFNBP10.8050735835.44E-29
THYMCGCTYMSMLLT110.8066047713.56E-29
THYMCGCTYMSLCK0.8148130243.43E-30
THYMCGCTYMSRAP1GDS10.8235160522.52E-31
THYMCGCTYMSMYB0.8265487429.80E-32
THYMCGCTYMSEWSR10.835021266.34E-33
THYMCGCTYMSEZH20.839250881.53E-33
THYMCGCTYMSCDKN2C0.847707097.77E-35
THYMCGCTYMSSFPQ0.8477863377.55E-35
THYMCGCTYMSSET0.8498931973.50E-35
THYMCGCTYMSBLM0.8531856681.02E-35
THYMCGCTYMSBUB1B0.8583638521.40E-36
THYMCGCTYMSFEN10.8711144487.22E-39
THYMCGCTYMSTCF30.882858073.36E-41
THYMEpifactorTYMSH2AFY0.8024328691.12E-28
THYMEpifactorTYMSH2AFV0.805777244.48E-29
THYMEpifactorTYMSLBR0.8075358882.75E-29
THYMEpifactorTYMSH2AFX0.8091734921.73E-29
THYMEpifactorTYMSUBE2T0.8111720189.82E-30
THYMEpifactorTYMSAURKA0.8174907351.56E-30
THYMEpifactorTYMSCBX30.8176777941.47E-30
THYMEpifactorTYMSH1FX0.8184662611.17E-30
THYMEpifactorTYMSGFI10.8284640875.35E-32
THYMEpifactorTYMSMTA30.8288537814.72E-32
THYMEpifactorTYMSHMGN20.8309945982.37E-32
THYMEpifactorTYMSCHEK10.8337402499.69E-33
THYMEpifactorTYMSEZH20.839250881.53E-33
THYMEpifactorTYMSGSG20.8446988082.29E-34
THYMEpifactorTYMSHMGB10.8455261331.70E-34
THYMEpifactorTYMSPBK0.8468230471.07E-34
THYMEpifactorTYMSCDK10.8472342359.22E-35
THYMEpifactorTYMSSFPQ0.8477863377.55E-35
THYMEpifactorTYMSSET0.8498931973.50E-35
THYMEpifactorTYMSCBX20.8541851337.01E-36
THYMEpifactorTYMSCDC60.8553779314.45E-36
THYMEpifactorTYMSCHAF1A0.8568857472.49E-36
THYMEpifactorTYMSAURKB0.8584142111.37E-36
THYMEpifactorTYMSTOP2A0.8586681911.24E-36
THYMEpifactorTYMSH2AFZ0.8608901965.13E-37
THYMEpifactorTYMSCENPA0.8671547363.92E-38
THYMEpifactorTYMSUHRF10.8679617642.79E-38
THYMEpifactorTYMSVRK10.8745577391.58E-39
THYMEpifactorTYMSBUB10.8756975089.47E-40
THYMEpifactorTYMSTTK0.8797599881.46E-40
THYMEpifactorTYMSHJURP0.8823385364.31E-41
THYMEpifactorTYMSASF1B0.8829266253.25E-41
THYMEpifactorTYMSRAD54L0.8843014931.67E-41
THYMEpifactorTYMSPCNA0.8861716536.65E-42
THYMEpifactorTYMSRAD510.9133958191.15E-48
THYMIUPHARTYMSCDK60.800342361.97E-28
THYMIUPHARTYMSSMPD30.8058647464.37E-29
THYMIUPHARTYMSCHRNA30.8063202563.85E-29
THYMIUPHARTYMSPVRIG0.8099495511.39E-29
THYMIUPHARTYMSPAFAH20.8124077756.89E-30
THYMIUPHARTYMSMME0.8139524614.41E-30
THYMIUPHARTYMSLCK0.8148130243.43E-30
THYMIUPHARTYMSAURKA0.8174907351.56E-30
THYMIUPHARTYMSKCNJ40.8259549771.18E-31
THYMIUPHARTYMSRRM10.8309981212.37E-32
THYMIUPHARTYMSCHEK10.8337402499.69E-33
THYMIUPHARTYMSEZH20.839250881.53E-33
THYMIUPHARTYMSNEK20.8423140655.30E-34
THYMIUPHARTYMSSLC29A10.84288764.33E-34
THYMIUPHARTYMSKIF110.8461975441.34E-34
THYMIUPHARTYMSPBK0.8468230471.07E-34
THYMIUPHARTYMSCDK10.8472342359.22E-35
THYMIUPHARTYMSPKMYT10.8479221457.19E-35
THYMIUPHARTYMSADA0.8514889251.94E-35
THYMIUPHARTYMSMELK0.8552446534.68E-36
THYMIUPHARTYMSBUB1B0.8583638521.40E-36
THYMIUPHARTYMSAURKB0.8584142111.37E-36
THYMIUPHARTYMSTOP2A0.8586681911.24E-36
THYMIUPHARTYMSACAT20.8738148932.20E-39
THYMIUPHARTYMSVRK10.8745577391.58E-39
THYMIUPHARTYMSPLK40.8754894771.04E-39
THYMIUPHARTYMSBUB10.8756975089.47E-40
THYMIUPHARTYMSTTK0.8797599881.46E-40
THYMIUPHARTYMSTUBB0.890269298.36E-43
THYMIUPHARTYMSPLK10.8922188933.03E-43
THYMIUPHARTYMSRRM20.8952345786.05E-44
THYMKinaseTYMSCDK60.800342361.97E-28
THYMKinaseTYMSLCK0.8148130243.43E-30
THYMKinaseTYMSAURKA0.8174907351.56E-30
THYMKinaseTYMSCHEK10.8337402499.69E-33
THYMKinaseTYMSNEK20.8423140655.30E-34
THYMKinaseTYMSGSG20.8446988082.29E-34
THYMKinaseTYMSPBK0.8468230471.07E-34
THYMKinaseTYMSCDK10.8472342359.22E-35
THYMKinaseTYMSPKMYT10.8479221457.19E-35
THYMKinaseTYMSMELK0.8552446534.68E-36
THYMKinaseTYMSBUB1B0.8583638521.40E-36
THYMKinaseTYMSAURKB0.8584142111.37E-36
THYMKinaseTYMSVRK10.8745577391.58E-39
THYMKinaseTYMSPLK40.8754894771.04E-39
THYMKinaseTYMSBUB10.8756975089.47E-40
THYMKinaseTYMSTTK0.8797599881.46E-40
THYMKinaseTYMSPLK10.8922188933.03E-43
THYMTFTYMSTFDP20.8103058791.26E-29
THYMTFTYMSTCF70.8110428761.02E-29
THYMTFTYMSMYBL20.8208443945.70E-31
THYMTFTYMSMYB0.8265487429.80E-32
THYMTFTYMSGFI10.8284640875.35E-32
THYMTFTYMSE2F80.8533137559.76E-36
THYMTFTYMSFOXM10.8536649958.54E-36
THYMTFTYMSCBX20.8541851337.01E-36
THYMTFTYMSCENPA0.8671547363.92E-38
THYMTFTYMSE2F20.8738551052.16E-39
THYMTFTYMSTCF30.882858073.36E-41
THYMTSGTYMSCDK60.800342361.97E-28
THYMTSGTYMSH2AFX0.8091734921.73E-29
THYMTSGTYMSMME0.8139524614.41E-30
THYMTSGTYMSCHEK10.8337402499.69E-33
THYMTSGTYMSEZH20.839250881.53E-33
THYMTSGTYMSCDKN2C0.847707097.77E-35
THYMTSGTYMSBLM0.8531856681.02E-35
THYMTSGTYMSE2F20.8738551052.16E-39
THYMTSGTYMSPTPN20.875532491.02E-39
THYMTSGTYMSTCF30.882858073.36E-41
THYMTSGTYMSPLK10.8922188933.03E-43
UCECCell metabolism geneTYMSRRM20.8329115124.97E-53
UCECCGCTYMSBLM0.8024806831.65E-46
UCECCGCTYMSFEN10.8110932463.12E-48
UCECCGCTYMSBUB1B0.8337863223.09E-53
UCECEpifactorTYMSPCNA0.8041852347.66E-47
UCECEpifactorTYMSTTK0.8098868195.50E-48
UCECEpifactorTYMSUHRF10.8169137691.89E-49
UCECEpifactorTYMSCDK10.8198714364.38E-50
UCECEpifactorTYMSGSG20.8235049247.01E-51
UCECEpifactorTYMSUBE2T0.8284915365.28E-52
UCECEpifactorTYMSAURKA0.8287388424.63E-52
UCECEpifactorTYMSHJURP0.8308329021.52E-52
UCECEpifactorTYMSTOP2A0.8338623272.96E-53
UCECEpifactorTYMSAURKB0.8354246051.26E-53
UCECEpifactorTYMSCENPA0.8370425265.12E-54
UCECEpifactorTYMSCHAF1A0.8409280515.70E-55
UCECEpifactorTYMSPBK0.8418217133.41E-55
UCECEpifactorTYMSRAD510.8453882244.26E-56
UCECEpifactorTYMSBUB10.8462120332.61E-56
UCECEpifactorTYMSRAD54L0.8469842971.65E-56
UCECEpifactorTYMSCDC60.8524205476.01E-58
UCECEpifactorTYMSASF1B0.8534948293.07E-58
UCECIUPHARTYMSTTK0.8098868195.50E-48
UCECIUPHARTYMSNEK20.8144115526.38E-49
UCECIUPHARTYMSCDK10.8198714364.38E-50
UCECIUPHARTYMSAURKA0.8287388424.63E-52
UCECIUPHARTYMSPKMYT10.8312505051.22E-52
UCECIUPHARTYMSRRM20.8329115124.97E-53
UCECIUPHARTYMSBUB1B0.8337863223.09E-53
UCECIUPHARTYMSTOP2A0.8338623272.96E-53
UCECIUPHARTYMSAURKB0.8354246051.26E-53
UCECIUPHARTYMSPBK0.8418217133.41E-55
UCECIUPHARTYMSBUB10.8462120332.61E-56
UCECIUPHARTYMSKIF110.846919951.71E-56
UCECIUPHARTYMSPLK10.8622212931.08E-60
UCECIUPHARTYMSMELK0.8677907642.37E-62
UCECKinaseTYMSTTK0.8098868195.50E-48
UCECKinaseTYMSNEK20.8144115526.38E-49
UCECKinaseTYMSCDK10.8198714364.38E-50
UCECKinaseTYMSGSG20.8235049247.01E-51
UCECKinaseTYMSAURKA0.8287388424.63E-52
UCECKinaseTYMSPKMYT10.8312505051.22E-52
UCECKinaseTYMSBUB1B0.8337863223.09E-53
UCECKinaseTYMSAURKB0.8354246051.26E-53
UCECKinaseTYMSPBK0.8418217133.41E-55
UCECKinaseTYMSBUB10.8462120332.61E-56
UCECKinaseTYMSPLK10.8622212931.08E-60
UCECKinaseTYMSMELK0.8677907642.37E-62
UCECTFTYMSMYBL20.8265107511.49E-51
UCECTFTYMSE2F20.8294053783.26E-52
UCECTFTYMSCENPA0.8370425265.12E-54
UCECTFTYMSFOXM10.8679727122.09E-62
UCECTSGTYMSBLM0.8024806831.65E-46
UCECTSGTYMSE2F20.8294053783.26E-52
UCECTSGTYMSPLK10.8622212931.08E-60
UCSCell metabolism geneTYMSPPP2R5D0.8032754358.91E-29
UCSCell metabolism geneTYMSSMPD30.8058647464.37E-29
UCSCell metabolism geneTYMSLBR0.8075358882.75E-29
UCSCell metabolism geneTYMSDUT0.8098773241.42E-29
UCSCell metabolism geneTYMSGNA150.8103612831.24E-29
UCSCell metabolism geneTYMSPAFAH20.8124077756.89E-30
UCSCell metabolism geneTYMSELOVL40.8135359844.97E-30
UCSCell metabolism geneTYMSPRIM20.8138863974.49E-30
UCSCell metabolism geneTYMSSEH1L0.8165993172.03E-30
UCSCell metabolism geneTYMSLCT0.8227087033.23E-31
UCSCell metabolism geneTYMSPOLE20.823785412.32E-31
UCSCell metabolism geneTYMSRRM10.8309981212.37E-32
UCSCell metabolism geneTYMSADA0.8514889251.94E-35
UCSCell metabolism geneTYMSHMMR0.8618242023.52E-37
UCSCell metabolism geneTYMSRPIA0.8705557649.20E-39
UCSCell metabolism geneTYMSACAT20.8738148932.20E-39
UCSCell metabolism geneTYMSRRM20.8952345786.05E-44
UCSCell metabolism geneTYMSTUBA1B0.9037424294.87E-46
UCSCGCTYMSCDK60.800342361.97E-28
UCSCGCTYMSBCL7A0.8003516841.97E-28
UCSCGCTYMSFANCD20.8039084057.49E-29
UCSCGCTYMSFNBP10.8050735835.44E-29
UCSCGCTYMSMLLT110.8066047713.56E-29
UCSCGCTYMSLCK0.8148130243.43E-30
UCSCGCTYMSRAP1GDS10.8235160522.52E-31
UCSCGCTYMSMYB0.8265487429.80E-32
UCSCGCTYMSEWSR10.835021266.34E-33
UCSCGCTYMSEZH20.839250881.53E-33
UCSCGCTYMSCDKN2C0.847707097.77E-35
UCSCGCTYMSSFPQ0.8477863377.55E-35
UCSCGCTYMSSET0.8498931973.50E-35
UCSCGCTYMSBLM0.8531856681.02E-35
UCSCGCTYMSBUB1B0.8583638521.40E-36
UCSCGCTYMSFEN10.8711144487.22E-39
UCSCGCTYMSTCF30.882858073.36E-41
UCSEpifactorTYMSH2AFY0.8024328691.12E-28
UCSEpifactorTYMSH2AFV0.805777244.48E-29
UCSEpifactorTYMSLBR0.8075358882.75E-29
UCSEpifactorTYMSH2AFX0.8091734921.73E-29
UCSEpifactorTYMSUBE2T0.8111720189.82E-30
UCSEpifactorTYMSAURKA0.8174907351.56E-30
UCSEpifactorTYMSCBX30.8176777941.47E-30
UCSEpifactorTYMSH1FX0.8184662611.17E-30
UCSEpifactorTYMSGFI10.8284640875.35E-32
UCSEpifactorTYMSMTA30.8288537814.72E-32
UCSEpifactorTYMSHMGN20.8309945982.37E-32
UCSEpifactorTYMSCHEK10.8337402499.69E-33
UCSEpifactorTYMSEZH20.839250881.53E-33
UCSEpifactorTYMSGSG20.8446988082.29E-34
UCSEpifactorTYMSHMGB10.8455261331.70E-34
UCSEpifactorTYMSPBK0.8468230471.07E-34
UCSEpifactorTYMSCDK10.8472342359.22E-35
UCSEpifactorTYMSSFPQ0.8477863377.55E-35
UCSEpifactorTYMSSET0.8498931973.50E-35
UCSEpifactorTYMSCBX20.8541851337.01E-36
UCSEpifactorTYMSCDC60.8553779314.45E-36
UCSEpifactorTYMSCHAF1A0.8568857472.49E-36
UCSEpifactorTYMSAURKB0.8584142111.37E-36
UCSEpifactorTYMSTOP2A0.8586681911.24E-36
UCSEpifactorTYMSH2AFZ0.8608901965.13E-37
UCSEpifactorTYMSCENPA0.8671547363.92E-38
UCSEpifactorTYMSUHRF10.8679617642.79E-38
UCSEpifactorTYMSVRK10.8745577391.58E-39
UCSEpifactorTYMSBUB10.8756975089.47E-40
UCSEpifactorTYMSTTK0.8797599881.46E-40
UCSEpifactorTYMSHJURP0.8823385364.31E-41
UCSEpifactorTYMSASF1B0.8829266253.25E-41
UCSEpifactorTYMSRAD54L0.8843014931.67E-41
UCSEpifactorTYMSPCNA0.8861716536.65E-42
UCSEpifactorTYMSRAD510.9133958191.15E-48
UCSIUPHARTYMSCDK60.800342361.97E-28
UCSIUPHARTYMSSMPD30.8058647464.37E-29
UCSIUPHARTYMSCHRNA30.8063202563.85E-29
UCSIUPHARTYMSPVRIG0.8099495511.39E-29
UCSIUPHARTYMSPAFAH20.8124077756.89E-30
UCSIUPHARTYMSMME0.8139524614.41E-30
UCSIUPHARTYMSLCK0.8148130243.43E-30
UCSIUPHARTYMSAURKA0.8174907351.56E-30
UCSIUPHARTYMSKCNJ40.8259549771.18E-31
UCSIUPHARTYMSRRM10.8309981212.37E-32
UCSIUPHARTYMSCHEK10.8337402499.69E-33
UCSIUPHARTYMSEZH20.839250881.53E-33
UCSIUPHARTYMSNEK20.8423140655.30E-34
UCSIUPHARTYMSSLC29A10.84288764.33E-34
UCSIUPHARTYMSKIF110.8461975441.34E-34
UCSIUPHARTYMSPBK0.8468230471.07E-34
UCSIUPHARTYMSCDK10.8472342359.22E-35
UCSIUPHARTYMSPKMYT10.8479221457.19E-35
UCSIUPHARTYMSADA0.8514889251.94E-35
UCSIUPHARTYMSMELK0.8552446534.68E-36
UCSIUPHARTYMSBUB1B0.8583638521.40E-36
UCSIUPHARTYMSAURKB0.8584142111.37E-36
UCSIUPHARTYMSTOP2A0.8586681911.24E-36
UCSIUPHARTYMSACAT20.8738148932.20E-39
UCSIUPHARTYMSVRK10.8745577391.58E-39
UCSIUPHARTYMSPLK40.8754894771.04E-39
UCSIUPHARTYMSBUB10.8756975089.47E-40
UCSIUPHARTYMSTTK0.8797599881.46E-40
UCSIUPHARTYMSTUBB0.890269298.36E-43
UCSIUPHARTYMSPLK10.8922188933.03E-43
UCSIUPHARTYMSRRM20.8952345786.05E-44
UCSKinaseTYMSCDK60.800342361.97E-28
UCSKinaseTYMSLCK0.8148130243.43E-30
UCSKinaseTYMSAURKA0.8174907351.56E-30
UCSKinaseTYMSCHEK10.8337402499.69E-33
UCSKinaseTYMSNEK20.8423140655.30E-34
UCSKinaseTYMSGSG20.8446988082.29E-34
UCSKinaseTYMSPBK0.8468230471.07E-34
UCSKinaseTYMSCDK10.8472342359.22E-35
UCSKinaseTYMSPKMYT10.8479221457.19E-35
UCSKinaseTYMSMELK0.8552446534.68E-36
UCSKinaseTYMSBUB1B0.8583638521.40E-36
UCSKinaseTYMSAURKB0.8584142111.37E-36
UCSKinaseTYMSVRK10.8745577391.58E-39
UCSKinaseTYMSPLK40.8754894771.04E-39
UCSKinaseTYMSBUB10.8756975089.47E-40
UCSKinaseTYMSTTK0.8797599881.46E-40
UCSKinaseTYMSPLK10.8922188933.03E-43
UCSTFTYMSTFDP20.8103058791.26E-29
UCSTFTYMSTCF70.8110428761.02E-29
UCSTFTYMSMYBL20.8208443945.70E-31
UCSTFTYMSMYB0.8265487429.80E-32
UCSTFTYMSGFI10.8284640875.35E-32
UCSTFTYMSE2F80.8533137559.76E-36
UCSTFTYMSFOXM10.8536649958.54E-36
UCSTFTYMSCBX20.8541851337.01E-36
UCSTFTYMSCENPA0.8671547363.92E-38
UCSTFTYMSE2F20.8738551052.16E-39
UCSTFTYMSTCF30.882858073.36E-41
UCSTSGTYMSCDK60.800342361.97E-28
UCSTSGTYMSH2AFX0.8091734921.73E-29
UCSTSGTYMSMME0.8139524614.41E-30
UCSTSGTYMSCHEK10.8337402499.69E-33
UCSTSGTYMSEZH20.839250881.53E-33
UCSTSGTYMSCDKN2C0.847707097.77E-35
UCSTSGTYMSBLM0.8531856681.02E-35
UCSTSGTYMSE2F20.8738551052.16E-39
UCSTSGTYMSPTPN20.875532491.02E-39
UCSTSGTYMSTCF30.882858073.36E-41
UCSTSGTYMSPLK10.8922188933.03E-43
UVMCell metabolism geneTYMSRRM20.8022094733.76E-19
UVMEpifactorTYMSCDC60.8612606161.22E-24
UVMIUPHARTYMSRRM20.8022094733.76E-19


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Protein structure


check button Protein 3D structure
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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
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* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KICHTYMSDHFR1.848988755782220.000120222568511963
KICHTYMSTK11.293508520135780.000429689884185791
KIRCTYMSMTHFD1-1.936381743698570.00050811011383314
PRADTYMSDHFR-1.137635446301470.000693018123481419
THCATYMSDUT-2.591183620098830.000711089919756285
KIRCTYMSDCTD-1.386640915230860.000866776833311133
ESCATYMSMTHFR-1.977854997806010.0009765625
ESCATYMSDTYMK-2.197775713130850.001953125
KIRPTYMSDHFR1.927710230735880.00256496202200651
CHOLTYMSMCM2-5.802035870301520.00390625
CHOLTYMSSHMT1-2.638080233058470.00390625
COADTYMSTK11.283627044618820.00561287999153138
ESCATYMSMTHFD1-3.269390743053350.009765625
KIRCTYMSDHFR1.390302777190690.0102479184635793
BLCATYMSSHMT1-2.103210205027460.012359619140625
LIHCTYMSDHFR-1.095731344586730.0138324207211816
COADTYMSDHFR1.203293545689840.0151321291923523
BRCATYMSMTHFD1-7.964172087193030.0176938185073105
ESCATYMSDHFR-5.801611599043240.0244140625
CHOLTYMSDUT-2.249889950690580.02734375
UCECTYMSDHFR-2.257118098331310.03125
BRCATYMSMTHFR1.606181269894360.0312890650643052
KIRCTYMSDHFRL1-1.80589872532211.39011934742714e-10
KIRPTYMSTK1-7.932153999679561.42422504723072e-05
PRADTYMSSHMT11.074614389166891.48880035272649e-05
LUADTYMSDHFR-2.437626283191861.73612226412662e-08
PRADTYMSDCTD1.44325692512442.13534004594814e-06
LUADTYMSMTHFD1-2.150313722794122.1660933617938e-09
BRCATYMSMCM2-5.589247588998092.4636673901259e-25
LUADTYMSDTYMK-5.578152933571963.24104467477296e-10
LIHCTYMSDUT-2.573443957457583.60241778081952e-05
LUSCTYMSDHFR-2.937691598976464.06130956907036e-08
LIHCTYMSTK1-4.92335180692934.1313472067693e-09
LUADTYMSMCM2-4.631638319514084.21032885135405e-11
BRCATYMSDTYMK-1.702089494962894.3481420804674e-21
KIRPTYMSMCM2-1.367273790424884.97791916131974e-07
KIRPTYMSDTYMK-4.005009108079465.24520874023438e-06
THCATYMSTK1-1.071216612053485.3786308950856e-08
LIHCTYMSMCM2-1.992454265116315.52349441012722e-09
STADTYMSMTHFD1-4.083274149891588.09784978628159e-07
THCATYMSDHFRL1-3.074322700984538.19249607378906e-08
BLCATYMSMTHFR-1.091995024807819.5367431640625e-05


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with TYMS
SH3GL2, TXNDC17, WDR1, ZFYVE19, SSSCA1, ZFYVE21, UBE2B, IGBP1, PSMA5, UBXN7, UBQLN4, ZRANB2, ATIC, UBE2A, UNK, ATP6V1C1, ATP6V1E1, WDR45B, PGAM1, UBE2K, VPS4B, ADSL, AHCYL1, UBE2C, UBE2M, UFC1, VCAM1, ITGA4, UPF2, EIF5A, DCK, GOT1, MAPK14, PLS3, SBDS, LIMS1, PDCD6, DUT, PHGDH, PPAT, REXO2, SAE1, STMN1, TXN, RPGRIP1L, POC5, POC1B, Tuba3a, CHEK1, PKIG, RTN1, PROSER2, ARHGEF35, ORF70, PHB, NRAS, KRAS, NR2C2, MDP1, nsp15, PABPC1, RBM47, CDC42, BFAR, MARCH3, MARCH4, MARCH6, RNF5, PSD4, NAPG, TANC2, EFHD2, PPP4R1L, PFDN2, PFDN1,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo
TYMSchr18657838GAsingle_nucleotide_variantLikely_benignnot_providedSO:0001819|synonymous_variantSO:0001819|synonymous_variant
TYMSchr18671433CTsingle_nucleotide_variantLikely_benignnot_providedSO:0001619|non-coding_transcript_variant,SO:0001819|synonymous_variant,SO:0001624|3_prime_UTR_variantSO:0001619|non-coding_transcript_variant,SO:0001819|synonymous_variant,SO:0001624|3_prime_UTR_variant
TYMSchr18673086AGsingle_nucleotide_variantBenignnot_providedSO:0001624|3_prime_UTR_variantSO:0001624|3_prime_UTR_variant


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
TYMSPAADchr18670816670816CTSilentp.I227I4
TYMSHNSCchr18670729670729CASilentp.L198L3
TYMSKIRPchr18662242662242AGMissense_Mutationp.R126G3
TYMSCESCchr18670729670729CGSilent3
TYMSPAADchr18672975672975TGMissense_Mutationp.I307S3
TYMSCOADchr18669136669136CTSilentp.D173D2
TYMSREADchr18672902672902CTNonsense_Mutationp.R283X2
TYMSUCECchr18670816670816CTSilentp.I2272
TYMSBLCAchr18670747670747GASilentp.V204V2
TYMSSARCchr18672908672908GCMissense_Mutation2
TYMSUCSchr18672902672902CTNonsense_Mutationp.R283*2
TYMSBLCAchr18670754670754GAMissense_Mutationp.E207K2
TYMSLIHCchr18671451671451GASilent2
TYMSSKCMchr18672884672884CGMissense_Mutationp.P277A2
TYMSESCAchr18657939657939GTMissense_Mutationp.S66I2
TYMSBRCAchr18670739670739TCMissense_Mutationp.Y202H2
TYMSPAADchr18670816670816CTSilent2
TYMSESCAchr18670755670755AGMissense_Mutationp.E207G2
TYMSLIHCchr18662207662207C-Frame_Shift_Delp.S114fs2
TYMSCESCchr18672892672892CGSilent2
TYMSPAADchr18672975672975TGMissense_Mutation2
TYMSESCAchr18671442671442GASilent2
TYMSLIHCchr18662289662289T-Frame_Shift_Delp.H141fs2
TYMSESCAchr18671442671442GASilentp.L265L2
TYMSSTADchr18659673659673TCMissense_Mutationp.F80L2
TYMSPRADchr18670815670815TAMissense_Mutationp.I227N2
TYMSREADchr18669144669144GAMissense_Mutationp.R176K1
TYMSTHYMchr18672946672946GTMissense_Mutationp.Q297H1
TYMSBLCAchr18672883672883CTSilentp.F276F1
TYMSLUADchr18670798670798CTSilentp.L221L1
TYMSCOADchr18670769670769CTSilentp.L212L1
TYMSLUADchr18662174662174CAMissense_Mutationp.S103Y1
TYMSCOADchr18670771670771GASilentp.L212L1
TYMSKIRPchr18662242662242AGMissense_Mutation1
TYMSLUADchr18662311662311AGMissense_Mutationp.M149V1
TYMSCOADchr18672957672957AGMissense_Mutationp.Y301C1
TYMSSARCchr18672908672908GCMissense_Mutationp.V285L1
TYMSBLCAchr18672911672911GCMissense_Mutationp.E286Q1
TYMSMESOchr18657887657887GAMissense_Mutation1
TYMSESCAchr18671442671442GASilentp.L2651
TYMSLIHCchr18671451671451GASilentp.Q268Q1
TYMSBLCAchr18672950672950GAMissense_Mutationp.E299K1
TYMSMESOchr18657887657887GAMissense_Mutationp.D49N1
TYMSSKCMchr18657755657755GAMissense_Mutationp.G5S1
TYMSLIHCchr18671451671451GASplice_Sitep.Q268_splice1
TYMSSKCMchr18662237662237CTMissense_Mutationp.S124F1
TYMSSKCMchr18672885672885CTMissense_Mutationp.P277L1
TYMSBLCAchr18672883672883CTSilent1
TYMSBLCAchr18670747670747GASilent1
TYMSLIHCchr18662215662215T-Frame_Shift_Delp.F117fs1
TYMSCESCchr18670729670729CGSilentp.L1981
TYMSGBMchr18672946672946GAMissense_Mutation1
TYMSTHCAchr18672874672874CASilent1
TYMSBLCAchr18670754670754GAMissense_Mutation1
TYMSLIHCchr18662293662293G-Frame_Shift_Delp.G143fs1
TYMSCESCchr18672892672892CGSilentp.L2791
TYMSHNSCchr18670789670789CGMissense_Mutation1
TYMSTHCAchr18662209662209CASilent1
TYMSBLCAchr18672911672911GCMissense_Mutation1
TYMSLIHCchr18670827670827C-Frame_Shift_Delp.A231fs1

check buttonCopy number variation (CNV) of TYMS
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across TYMS
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
43015N/AAI361601CLUL1chr18649964+TYMSchr18657842+
43015N/ABM144222KLHL3chr5136997780-TYMSchr18672549+
95679HNSCTCGA-CV-6935TYMSchr18659714+C18orf56chr18649964-
95679N/AAW878210TYMSchr18668859+C20orf24chr2035240288+
97391OVTCGA-13-0905TYMSchr18662320+CARKDchr13111274562+
97170UCECTCGA-KJ-A3U4TYMSchr18662320+DYNC2H1chr11103228970+
95679N/ABF245161TYMSchr18669173+ENOSF1chr18670692+
103056BLCATCGA-XF-A9ST-01ATYMSchr18662320+GNASchr2057470667+
97731STADTCGA-BR-8080-01ATYMSchr18662320+PABPC1Lchr2043561698+
102865BRCATCGA-BH-A1FC-01ATYMSchr18662320+SEPT9chr1775483506+
97632ESCATCGA-IG-A97HTYMSchr18662320+SLC12A4chr1667997462-
95679OVTCGA-24-2254TYMSchr18662320+SUMO1chr2203075529-
95679N/ADB026411TYMSchr18661092+TRAIPchr349879334-
95734OVTCGA-13-0899TYMSchr18671451+USP14chr18209970+
95679LUSCTCGA-85-8353-01ATYMSchr18662319+YES1chr18732964-
95679LUSCTCGA-85-8353-01ATYMSchr18662320+YES1chr18732965-


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
TGCTTYMS0.001096453725994360.031
SARCTYMS0.001227368457918490.033
HNSCTYMS0.002821737096768680.073
LUADTYMS0.005672297425355110.14
KIRCTYMS0.008152098508054450.2
BLCATYMS0.02083617928202230.48
ESCATYMS0.02793236195145240.61
LAMLTYMS0.03159594839848350.66
PAADTYMS0.03618810686852090.72

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LIHCTYMS0.01567047332527610.39
STADTYMS0.008698064634089040.23
LUSCTYMS0.007987584463099350.22
LGGTYMS1.04730638547104e-063.5e-05
BRCATYMS0.0002125028634908150.0064
PRADTYMS9.02985123841731e-050.0028
ESCATYMS2.17899239311569e-057e-04
PCPGTYMS0.01029059238590550.27
THYMTYMS0.0006656823356014590.019

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
P04818DB00293RaltitrexedInhibitorSmall moleculeApproved|Investigational
P04818DB00322FloxuridineSmall moleculeApproved
P04818DB00432TrifluridineInhibitorSmall moleculeApproved|Investigational
P04818DB00441GemcitabineInhibitorSmall moleculeApproved
P04818DB00544FluorouracilOther/unknownSmall moleculeApproved
P04818DB00563MethotrexateInhibitorSmall moleculeApproved
P04818DB01101CapecitabineInhibitorSmall moleculeApproved|Investigational
P04818DB01643Thymidine monophosphateSmall moleculeExperimental
P04818DB0354110-Propargyl-5,8-Dideazafolic AcidSmall moleculeExperimental
P04818DB03800Deoxyuridine monophosphateSmall moleculeExperimental
P04818DB04530S,S-(2-Hydroxyethyl)ThiocysteineSmall moleculeExperimental
P04818DB05116ThymectacinSmall moleculeInvestigational
P04818DB05308ANX-510Small moleculeInvestigational
P04818DB05457OSI-7904LSmall moleculeInvestigational
P04818DB06813PralatrexateInhibitorSmall moleculeApproved|Investigational
P04818DB075772,4-Diamino-5-phenyl-6-ethylpyrimidineSmall moleculeExperimental
P04818DB08478N-[2-Chloro-5-(trifluoromethyl)phenyl]imidodicarbonimidic diamideSmall moleculeExperimental
P04818DB08479N-(3,5-dimethoxyphenyl)imidodicarbonimidic diamideSmall moleculeExperimental
P04818DB087346,6-DIMETHYL-1-[3-(2,4,5-TRICHLOROPHENOXY)PROPOXY]-1,6-DIHYDRO-1,3,5-TRIAZINE-2,4-DIAMINESmall moleculeExperimental
P04818DB09256TegafurInhibitorSmall moleculeApproved|Investigational
P04818DB09327Tegafur-uracilAntagonistSmall moleculeApproved|Investigational
P04818DB00293RaltitrexedInhibitor
P04818DB00322Floxuridine
P04818DB00432TrifluridineInhibitor
P04818DB00441GemcitabineInhibitor
P04818DB00544FluorouracilOther/unknown
P04818DB00563MethotrexateInhibitor
P04818DB01101CapecitabineInhibitor
P04818DB01643Thymidine monophosphate
P04818DB0354110-Propargyl-5,8-Dideazafolic Acid
P04818DB03800Deoxyuridine monophosphate
P04818DB04530S,S-(2-Hydroxyethyl)Thiocysteine
P04818DB05116Thymectacin
P04818DB05308ANX-510
P04818DB05457OSI-7904L
P04818DB06813PralatrexateInhibitor
P04818DB075772,4-Diamino-5-phenyl-6-ethylpyrimidine
P04818DB08478N-[2-Chloro-5-(trifluoromethyl)phenyl]imidodicarbonimidic diamide
P04818DB08479N-(3,5-dimethoxyphenyl)imidodicarbonimidic diamide
P04818DB087346,6-DIMETHYL-1-[3-(2,4,5-TRICHLOROPHENOXY)PROPOXY]-1,6-DIHYDRO-1,3,5-TRIAZINE-2,4-DIAMINE
P04818DB09256TegafurInhibitor
P04818DB09327Tegafur-uracilAntagonist

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source
C0009402Colorectal Carcinoma11CTD_human
C0007102Malignant tumor of colon6CTD_human
C0024623Malignant neoplasm of stomach4CTD_human
C1708349Hereditary Diffuse Gastric Cancer4CTD_human
C0006142Malignant neoplasm of breast3CTD_human
C0678222Breast Carcinoma3CTD_human
C1257931Mammary Neoplasms, Human3CTD_human
C4704874Mammary Carcinoma, Human3CTD_human
C0242379Malignant neoplasm of lung2CTD_human
C2239176Liver carcinoma2CTD_human
C0002871Anemia1CTD_human
C0007113Rectal Carcinoma1CTD_human
C0007137Squamous cell carcinoma1CTD_human
C0008924Cleft upper lip1CTD_human
C0008925Cleft Palate1CTD_human
C0024301Lymphoma, Follicular1CTD_human
C0024302Reticulosarcoma1CTD_human
C0024304Lymphoma, Mixed-Cell1CTD_human
C0024305Lymphoma, Non-Hodgkin1CTD_human
C0024306Lymphoma, Undifferentiated1CTD_human
C0030297Pancreatic Neoplasm1CTD_human
C0079740High Grade Lymphoma (neoplasm)1CTD_human
C0079741Lymphoma, Intermediate-Grade1CTD_human
C0079745Lymphoma, Large-Cell, Follicular1CTD_human
C0079747Low Grade Lymphoma (neoplasm)1CTD_human
C0079757Diffuse Mixed-Cell Lymphoma1CTD_human
C0079758Lymphoma, Mixed-Cell, Follicular1CTD_human
C0079765Lymphoma, Small Cleaved-Cell, Follicular1CTD_human
C0079770Lymphoma, Small Noncleaved-Cell1CTD_human
C0152013Adenocarcinoma of lung (disorder)1CTD_human
C0153349Malignant neoplasm of tongue1CTD_human
C0278996Malignant Head and Neck Neoplasm1CTD_human
C0346647Malignant neoplasm of pancreas1CTD_human
C0376358Malignant neoplasm of prostate1CTD_human
C0746787Cancer of Neck1CTD_human
C0751075Cancer of Digestive System1CTD_human
C0751177Cancer of Head1CTD_human
C0919267ovarian neoplasm1CTD_human
C1140680Malignant neoplasm of ovary1CTD_human
C1837218Cleft palate, isolated1CTD_human
C1956130Lymphoma, Follicular, Grade 11CTD_human
C1956131Lymphoma, Follicular, Grade 31CTD_human
C1956132Lymphoma, Follicular, Grade 21CTD_human
C3714542Lymphoma, Diffuse1CTD_human
C4721532Lymphoma, Non-Hodgkin, Familial1CTD_human