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Center for Computational Systems Medicine
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Gene Summary

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Translation studies in PubMed

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Exon Skipping Events

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Expression

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Expression Regulation

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Associated Genes

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Protein 3D Structure

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Protein-Protein Interaction

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Mutations

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Prognostic Analysis

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Gender Association

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Age Association

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Related Drugs

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Related Diseases

Translation Factor: MAPKAPK5 (NCBI Gene ID:8550)


Gene Summary

check button Gene Summary
Gene InformationGene Name: MAPKAPK5
Gene ID: 8550
Gene Symbol

MAPKAPK5

Gene ID

8550

Gene NameMAPK activated protein kinase 5
SynonymsMAPKAP-K5|MK-5|MK5|PRAK
Cytomap

12q24.12-q24.13

Type of Geneprotein-coding
DescriptionMAP kinase-activated protein kinase 5MAPKAP kinase 5MAPKAPK-5mitogen-activated protein kinase-activated protein kinase 5p38-regulated/activated protein kinase
Modification date20200313
UniProtAcc

Q8IW41


check button Child GO biological process term(s) under GO:0006412
GO IDGO term
GO:0006417Regulation of translation
GO:0006412Translation


check button Gene ontology of translaction factor with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMAPKAPK5

GO:0006417

regulation of translation

21329882

HgeneMAPKAPK5

GO:0007265

Ras protein signal transduction

17254968

HgeneMAPKAPK5

GO:0046777

protein autophosphorylation

21329882

HgeneMAPKAPK5

GO:0090400

stress-induced premature senescence

17254968



check button Inferred gene age of translation factor.
GeneInferred gene age group among (0 - 67.6], (67.6 - 355.7], (355.7 - 733], (733 - 1119.25], >1119.25


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Translation Studies in PubMed

check button We searched PubMed using 'MAPKAPK5[title] AND translation [title] AND human.'
GeneTitlePMID
MAPKAPK5..


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Exon Skipping Events

check buttonSkipped exons in TCGA and GTEx based on Ensembl gene isoform structure.
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
For more annotations, please visit our ExonSkipDB.
all structure

check button Open reading frame (ORF) analsis of exon skipping events based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ENSTExon skip start (DNA)Exon Skip end (DNA)ORF
ENST00000551404112303053112303127Frame-shift
ENST00000551404112303959112304035Frame-shift
ENST00000551404112305375112305473Frame-shift
ENST00000551404112306556112306665Frame-shift
ENST00000551404112308074112308164In-frame
ENST00000551404112318250112318331In-frame
ENST00000551404112321384112321572Frame-shift
ENST00000551404112323719112323840Frame-shift
ENST00000551404112326688112326810Frame-shift
ENST00000551404112327843112327948In-frame

check button Exon skipping position in the amino acid sequence.
ENSTExon skip start (DNA)Exon Skip end (DNA)Len(transcript seq)Exon skip start (mRNA)Exon Skip end (mRNA)Len(amino acid seq)Exon skip start (AA)Exon Skip end (AA)
ENST000005514041123080741123081641647502591473131161
ENST000005514041123182501123183311647688768473193220
ENST00000551404112327843112327948164713311435473407442

check button Potentially (partially) lost protein functional features of UniProt.
UniProtAccExon skip start (AA)Exon Skip end (AA)Function feature start (AA)Function feature end (AA)Functional feature typeFunctional feature desc.
Q8IW411932201473ChainID=PRO_0000086296;Note=MAP kinase-activated protein kinase 5
Q8IW414074421473ChainID=PRO_0000086296;Note=MAP kinase-activated protein kinase 5
Q8IW411311611473ChainID=PRO_0000086296;Note=MAP kinase-activated protein kinase 5
Q8IW4119322022304DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q8IW4113116122304DomainNote=Protein kinase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159
Q8IW41407442409440Coiled coilOntology_term=ECO:0000255;evidence=ECO:0000255
Q8IW41131161148148Active siteNote=Proton acceptor;Ontology_term=ECO:0000255,ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00159,ECO:0000255|PROSITE-ProRule:PRU10027
Q8IW41193220212212Modified residueNote=Phosphoserine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:12808055;Dbxref=PMID:12808055
Q8IW41407442407408Alternative sequenceID=VSP_011597;Note=In isoform 2. Missing;Ontology_term=ECO:0000303,ECO:0000303,ECO:0000303;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005;Dbxref=PMID:14702039,PMID:15489334,PMID:17974005
Q8IW41193220212212MutagenesisNote=Mimicks phosphorylation state and displays a slightly higher protein kinase activity. S->D;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:12808055;Dbxref=PMID:12808055


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Expression


check buttonGene expression level across TCGA pancancer
all structure

check buttonGene expression level across GTEx pantissue
all structure

check buttonExpression level of gene isoforms across TCGA pancancer
all structure

check buttonExpression level of gene isoforms across GTEx pantissue
all structure

check buttonCancer(tissue) type-specific expression level of Translation factor using z-score distriution
all structure

check buttonDifferential expression between tumor and matched normal (in the cancer types with more than 10 matched samples)
all structure
Cancer typeTranslation factorFCadj.pval
LUADMAPKAPK5-1.90091987524090.000358042351864552
KIRPMAPKAPK5-2.094465156894520.00779616041108966
PRADMAPKAPK5-2.06103044869920.0160054188673
LIHCMAPKAPK5-1.543817865223091.89937725360959e-05


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Expression Regulation


check buttonTranslation factor expression regulation through miRNA binding
Cancer typeGenemiRNATargetScan binding score (Context++ score percentile)CoefficientPvalue


check buttonTranslation factor expression regulation through methylation in the promoter of Translation factor
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through methylation in the gene body of Translation factor (positive regulation)
all structure
Cancer typeGenemethyl group bmethyl group aDEG pvalavg methyl in bavg methyl in aavg exp in bavg exp in a

check buttonTranslation factor expression regulation through copy number variation of Translation factor
all structure
Cancer typeGeneCoefficientPvalue
SARCMAPKAPK50.4189379830.001819863
KICHMAPKAPK50.0882049110.003698325
ESCAMAPKAPK50.1451760710.020329862

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Associated Genes


check button Strongly correlated genes belong to cellular important gene groups with MAPKAPK5 (coefficient>0.8, pval<0.05, node color based on FC between tumor and matched normal). Significantly associated important genes in the individual cancer types. * Cell metabolism gene: cell metabolism genes from REACTOME (black edge), IUPHAR: drug target genes from IUPHAR (blue edge), Kinase: human kinase genes (brown edge), CGC: cancer gene census genes (orange edge), TSG: tumor suppresor genes (purple edge), Epifactor: epigenetic factors (light blue edge), TF: transcription factors (green)
all structure
Cancer typeGene groupTranslation factorCorrelated geneCoefficientPvalue
TGCTCell metabolism geneMAPKAPK5NUP370.808633052.62E-37
UVMCell metabolism geneMAPKAPK5ALG10B0.8006080974.99E-19
UVMCell metabolism geneMAPKAPK5NUP1070.8098708449.43E-20


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Protein structure


check button Protein 3D structure
Visit iCn3D.


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Protein-Protein Interaction


check button Protein-protein interaction networks
* Overlap between up-regulated DEGs (log2FC<-1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure

check buttonOverlap between down-regulated DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network (center: Translation factor, node: DEGs, edges: weighted by -log2(adj.P))
all structure
check button
* Edge colors based on TCGA cancer types.

check button* Overlap between DEGs (log2FC>1 and adj.P<0.05) and STRING PPI network per cancer (center: Translation factor, node: DEGs, node color: log2FC, edges: weighted by -log2(adj.P))
all structure
Cancer typeTranslation factorInteracting protein coding geneFCadj.pval
KIRPMAPKAPK5MAP2K3-2.782565539919690.00016188295558095
KICHMAPKAPK5MYC1.191946842365790.000329077243804932
PRADMAPKAPK5MAP2K61.560204627258890.000512209556395587
LUADMAPKAPK5HSPB1-1.800499983487820.000895454784300369
HNSCMAPKAPK5MAPK41.632155885316050.000922890671972711
THCAMAPKAPK5MAP2K3-2.342018711876630.00101209232175966
LIHCMAPKAPK5FOXO31.535511049414240.00126327311470459
LUADMAPKAPK5MAP2K6-1.489390975012430.00171473165568087
LUSCMAPKAPK5MYC1.801453192548420.00250329335752618
KICHMAPKAPK5FOXO32.35523349940370.00308787822723389
CHOLMAPKAPK5MAP2K3-1.44131218454160.00390625
STADMAPKAPK5HSPB1-1.724433937732910.00828406633809209
LUADMAPKAPK5MAP2K3-1.356521509915780.013228736909195
UCECMAPKAPK5TP532.032950383766940.015625
LUSCMAPKAPK5FOXO3-1.278814782200540.0174932185880974
STADMAPKAPK5FOXO3-1.494437625963360.0375871751457453
ESCAMAPKAPK5MAP2K31.232680129902330.0419921875
LUSCMAPKAPK5MAP2K3-5.137698863400971.07831278943457e-05
BRCAMAPKAPK5MAPK14-1.69281314807611.08867679255958e-06
PRADMAPKAPK5MAPK141.202738509659862.06740855708439e-05
LIHCMAPKAPK5MAPK11-2.042441774103992.35319665208461e-06
KIRCMAPKAPK5MYC-7.573215395209743.45880777969452e-10
KIRCMAPKAPK5TP53-1.430509811506324.58942580328929e-09
BRCAMAPKAPK5HSPB1-1.449803431059224.97528468246305e-10
THCAMAPKAPK5TP53-1.819601436356476.18215597921662e-07
KIRCMAPKAPK5HSPB1-1.635155895156787.52485613123653e-05
THCAMAPKAPK5MAP2K61.196480852044187.74277447941537e-06
THCAMAPKAPK5MAPK11-4.044786162869938.27580425414032e-05
LIHCMAPKAPK5MAP2K3-1.727544883785178.74899637644469e-09
KIRPMAPKAPK5MYC-5.469718315228569.0546440333128e-05


check button Protein-protein interactors with this translation factor (BIOGRID-3.4.160)
PPI interactors with MAPKAPK5
HSPB1, HSPB2, MAPK6, MAPK14, RPL13, ZNF282, TAB1, Nedd4, MAPK4, MAPKAPK2, LSR, CDCA8, ZNF576, SRPK2, SRPK1, TP53, MAPK9, MAPK1, EIF4EBP1, MAPKAPK5, STK40, PARK7, CSK, Yap1, YAP1, CSNK1E, HSPD1, FASN, HMGB1, DDX39A, ZNF577, BCL7B,


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Mutations


check button Clinically associated variants from ClinVar.
GeneChrPositionRefSeqVarSeqRefSeeqVarTypePathogenicDiseaseVarInfo


check button nsSNVs with sample frequency (size of circle) from TCGA 33 cancers.
all structure


check button SNVs and Indels
GeneCancer typeChromosomeStartEndRefSeeqMutSeqMutation typeAAchange# samples
MAPKAPK5LIHCchr12112306591112306591G-Frame_Shift_Delp.G108fs3
MAPKAPK5ESCAchr12112304016112304016GAMissense_Mutationp.R56H3
MAPKAPK5CESCchr12112327921112327921GCMissense_Mutation3
MAPKAPK5UCECchr12112308118112308118AGMissense_Mutationp.H146R3
MAPKAPK5PRADchr12112326400112326400CGMissense_Mutationp.L360V3
MAPKAPK5UCECchr12112306616112306616GTMissense_Mutationp.S115I2
MAPKAPK5SKCMchr12112305454112305454CTMissense_Mutationp.P89S2
MAPKAPK5LIHCchr12112321444112321444T-Frame_Shift_Delp.P240fs2
MAPKAPK5UCECchr12112323839112323839ACMissense_Mutationp.K323T2
MAPKAPK5SKCMchr12112308966112308966TCSilentp.P187P2
MAPKAPK5ESCAchr12112304016112304016GAMissense_Mutation2
MAPKAPK5UCECchr12112330835112330835ACMissense_Mutationp.E464D2
MAPKAPK5STADchr12112305379112305379CTMissense_Mutationp.R64C2
MAPKAPK5UVMchr12112330858112330858C-Frame_Shift_Delp.S470fs2
MAPKAPK5STADchr12112323793112323793GAMissense_Mutationp.E308K2
MAPKAPK5LUADchr12112326315112326315GASilentp.Q331Q2
MAPKAPK5UVMchr12112306587112306587G-Frame_Shift_Delp.M105fs2
MAPKAPK5LIHCchr12112308091112308091GAMissense_Mutation2
MAPKAPK5STADchr12112308145112308145T-Frame_Shift_Delp.L155fs2
MAPKAPK5LUADchr12112323825112323825GTMissense_Mutationp.Q318H2
MAPKAPK5LIHCchr12112330837112330837ATMissense_Mutation2
MAPKAPK5LUADchr12112323739112323739GTNonsense_Mutationp.E290*2
MAPKAPK5HNSCchr12112318261112318261CTMissense_Mutationp.A197V2
MAPKAPK5PAADchr12112326328112326328CTNonsense_Mutationp.Q336*2
MAPKAPK5LUADchr12112326352112326352GAMissense_Mutationp.D344N2
MAPKAPK5LGGchr12112321472112321472AGMissense_Mutationp.I250V2
MAPKAPK5LIHCchr12112308091112308091GAMissense_Mutationp.R137Q2
MAPKAPK5UCECchr12112305415112305415GTMissense_Mutationp.V76F2
MAPKAPK5LGGchr12112321472112321472AGMissense_Mutation2
MAPKAPK5BLCAchr12112326227112326227CGMissense_Mutation1
MAPKAPK5LUSCchr12112321495112321495GCMissense_Mutationp.K257N1
MAPKAPK5LIHCchr12112321574112321574TCSplice_Site1
MAPKAPK5BLCAchr12112326395112326395CTMissense_Mutation1
MAPKAPK5ESCAchr12112321523112321523GTNonsense_Mutationp.E267*1
MAPKAPK5LUSCchr12112321523112321523GAMissense_Mutationp.E267K1
MAPKAPK5LIHCchr12112306624112306624CASilent1
MAPKAPK5BLCAchr12112303982112303982CGMissense_Mutationp.Q45E1
MAPKAPK5LIHCchr12112326794112326794C-Frame_Shift_Delp.L402fs1
MAPKAPK5MESOchr12112321417112321417CASilent1
MAPKAPK5LIHCchr12112323800112323800TCMissense_Mutation1
MAPKAPK5BLCAchr12112323737112323737CTMissense_Mutationp.P289L1
MAPKAPK5LIHCchr12112327901112327901G-Frame_Shift_Delp.R425fs1
MAPKAPK5ESCAchr12112321523112321523GTNonsense_Mutationp.E267X1
MAPKAPK5MESOchr12112321452112321452CAMissense_Mutation1
MAPKAPK5LIHCchr12112305444112305444TCSilent1
MAPKAPK5BLCAchr12112326395112326395CTMissense_Mutationp.P358L1
MAPKAPK5HNSCchr12112318261112318261CTMissense_Mutation1
MAPKAPK5MESOchr12112321507112321507CASilent1
MAPKAPK5HNSCchr12112323725112323725TAMissense_Mutation1
MAPKAPK5OVchr12112318333112318333TASplice_Sitep.K220_splice1
MAPKAPK5THYMchr12112330794112330794GTMissense_Mutation1
MAPKAPK5THYMchr12112308090112308090CTMissense_Mutationp.R137W1
MAPKAPK5CESCchr12112327921112327921GCMissense_Mutationp.D434H1
MAPKAPK5LUADchr12112305409112305409AGMissense_Mutationp.N74D1
MAPKAPK5HNSCchr12112323725112323725TAMissense_Mutationp.L285Q1
MAPKAPK5PAADchr12112326328112326328CTNonsense_Mutationp.Q336X1
MAPKAPK5LIHCchr12112327908112327908CTSilentp.C429C1
MAPKAPK5THYMchr12112326727112326727AGMissense_Mutationp.E380G1
MAPKAPK5COADchr12112308895112308895CTMissense_Mutationp.P164S1
MAPKAPK5LIHCchr12112308139112308139AGMissense_Mutationp.N153S1
MAPKAPK5COADchr12112318312112318312CTMissense_Mutationp.T214M1
MAPKAPK5PAADchr12112326328112326328CTNonsense_Mutation1
MAPKAPK5BLCAchr12112303982112303982CGMissense_Mutation1
MAPKAPK5LIHCchr12112330837112330837ATMissense_Mutationp.E465V1
MAPKAPK5UCECchr12112306591112306591G-Frame_Shift_Delp.G107fs1
MAPKAPK5COADchr12112321467112321467GAMissense_Mutationp.R248Q1
MAPKAPK5LUADchr12112308955112308955CGMissense_Mutationp.Q184E1
MAPKAPK5LGGchr12112327906112327906TGMissense_Mutationp.C427G1
MAPKAPK5BLCAchr12112323737112323737CTMissense_Mutation1
MAPKAPK5COADchr12112327900112327900CTMissense_Mutationp.R427W1
MAPKAPK5LUSCchr12112318306112318306CANonsense_Mutationp.S212*1
MAPKAPK5READchr12112321565112321565GAMissense_Mutationp.V281M1

check buttonCopy number variation (CNV) of MAPKAPK5
* Click on the image to open the original image in a new window.
all structure

check buttonFusion gene breakpoints (product of the structural variants (SVs)) across MAPKAPK5
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure


check button Fusion genes with this translation factor from FusionGDB2.0.
FusionGDB2 IDDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
97659N/AEC500789ACAD10chr12112126491+MAPKAPK5chr12112329494+
97659N/AEI790194CDKL3chr5133685290+MAPKAPK5chr12112319509-
97659N/AEC576418CTCFLchr2056085863-MAPKAPK5chr12112297103+
60891N/ADD229444MAPKAPK5chr12112326688-ABHD12chr2025356322+
101880BRCATCGA-E2-A15JMAPKAPK5chr12112308984+ACAD10chr12112182446+
101880Non-CancerTCGA-50-6595-11AMAPKAPK5chr12112308984+ACAD10chr12112182447+
101880..MAPKAPK5chr12112308888+ACAD10chr12112308888+
90930ACCTCGA-OR-A5J7-01AMAPKAPK5chr12112280573+ALDH2chr12112241663+
90930LUADTCGA-86-8054-01AMAPKAPK5chr12112280573+ALDH2chr12112237710+
90930STADTCGA-BR-A452-01AMAPKAPK5chr12112318331+ALDH2chr12112219722+
90930STADTCGA-BR-A452-01AMAPKAPK5chr12112321572+ALDH2chr12112213409+
98376ESCATCGA-IG-A3I8MAPKAPK5chr12112280573+ATXN2chr12111908546-
60674SARCTCGA-3B-A9HO-01AMAPKAPK5chr12112280573+CCDC38chr1296266238-
103289STADTCGA-VQ-A928MAPKAPK5chr12112304035+ERP29chr12112457559+
99799BRCATCGA-BH-A18H-01AMAPKAPK5chr12112304035+GNPTABchr12102183835-
97659N/ABE169498MAPKAPK5chr12112326390-MAPKAPK5chr12112326778+
97659N/ABP398174MAPKAPK5chr12112334947+MAPKAPK5chr12112325382+
97659N/ABP398708MAPKAPK5chr12112326569+MAPKAPK5chr12112325382+
97659N/ABU622192MAPKAPK5chr12112326740-MAPKAPK5chr12112326336+
89127SARCTCGA-PC-A5DN-01AMAPKAPK5chr12112326422+PAWRchr1280007389-
98411LUADTCGA-38-4630-01AMAPKAPK5chr12112280573+PTPN11chr12112884080+
60081READTCGA-AG-4015MAPKAPK5chr12112308984+SMARCD1chr1250490633+
93695ESCATCGA-L5-A4OTMAPKAPK5chr12112308984+TRAFD1chr12112568314+
93695ESCATCGA-L5-A4OTMAPKAPK5chr12112308984+TRAFD1chr12112572541+
93695ESCATCGA-L5-A4OTMAPKAPK5chr12112308984+TRAFD1chr12112572542+
93695ESCATCGA-L5-A4OT-01AMAPKAPK5chr12112308984+TRAFD1chr12112568315+
96797SARCTCGA-PC-A5DN-01AMAPKAPK5chr12112326422+UNC119Bchr12121157723+
97659N/ABI495727PIP4K2Achr1022843231+MAPKAPK5chr12112330967-
97659N/ACA312732ROMO1chr2034288845-MAPKAPK5chr12112331098+
97659OVTCGA-24-2262-01AUSB1chr1658051343+MAPKAPK5chr12112308889+
97670PRADTCGA-HC-7818-01AUSP9XchrX40982977-MAPKAPK5chr12112303054+


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Prognostic Analysis


check button Kaplan-Meier plots with logrank tests of overall survival (OS)
all structure
Cancer typeTranslation factorCoefficentHazard ratioWald test pvalLikelihool ratio pvalLogrank test pval# samples


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Translation factor and Gender


check button Differential gene expression between female and male. (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
TGCTMAPKAPK50.003691493905933850.1
HNSCMAPKAPK50.006196333007455460.16
PCPGMAPKAPK50.0190068794378340.48
GBMMAPKAPK50.02278888872967280.55
PAADMAPKAPK50.0434829721865861
LUADMAPKAPK54.29270872077794e-060.00012

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Translation factor and Age


check button Differential gene expression between young and old age groups (Wilcoxon test, pval<0.05)
all structure
Cancer typeTranslation factorpvaladj.p
LAMLMAPKAPK50.01245447446065170.41
OVMAPKAPK50.01813970091545470.58

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Related Drugs


check button Drugs targeting genes involved in this translation factor.
(DrugBank Version 5.1.8 2021-05-08)
UniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases


check button Diseases associated with this translation factor.
(DisGeNet 4.0)
Disease IDDisease Name# PubMedsDisease source