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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:BRAF-DPP6 (FusionGDB2 ID:10123)

Fusion Gene Summary for BRAF-DPP6

check button Fusion gene summary
Fusion gene informationFusion gene name: BRAF-DPP6
Fusion gene ID: 10123
HgeneTgene
Gene symbol

BRAF

DPP6

Gene ID

673

1804

Gene nameB-Raf proto-oncogene, serine/threonine kinasedipeptidyl peptidase like 6
SynonymsB-RAF1|B-raf|BRAF1|NS7|RAFB1DPL1|DPPX|MRD33|VF2
Cytomap

7q34

7q36.2

Type of geneprotein-codingprotein-coding
Descriptionserine/threonine-protein kinase B-raf94 kDa B-raf proteinB-Raf proto-oncogene serine/threonine-protein kinase (p94)B-Raf serine/threonine-proteinmurine sarcoma viral (v-raf) oncogene homolog B1proto-oncogene B-Rafv-raf murine sarcoma viral oncogene dipeptidyl aminopeptidase-like protein 6DPP VIdipeptidyl aminopeptidase IV-related proteindipeptidyl peptidase IV-related proteindipeptidyl peptidase VIdipeptidyl-peptidase 6
Modification date2020032920200313
UniProtAcc

P15056

P42658

Ensembl transtripts involved in fusion geneENST00000288602, ENST00000427557, 
ENST00000496611, ENST00000332007, 
ENST00000377770, ENST00000404039, 
ENST00000406326, 
Fusion gene scores* DoF score28 X 21 X 11=646817 X 17 X 7=2023
# samples 3219
** MAII scorelog2(32/6468*10)=-4.3371758685863
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(19/2023*10)=-3.41242499622733
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: BRAF [Title/Abstract] AND DPP6 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointBRAF(140624366)-DPP6(154143299), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneBRAF

GO:0000186

activation of MAPKK activity

29433126

HgeneBRAF

GO:0006468

protein phosphorylation

17563371

HgeneBRAF

GO:0010828

positive regulation of glucose transmembrane transport

23010278

HgeneBRAF

GO:0033138

positive regulation of peptidyl-serine phosphorylation

19667065

HgeneBRAF

GO:0043066

negative regulation of apoptotic process

19667065

HgeneBRAF

GO:0070374

positive regulation of ERK1 and ERK2 cascade

22065586

HgeneBRAF

GO:0071277

cellular response to calcium ion

18567582

HgeneBRAF

GO:0090150

establishment of protein localization to membrane

23010278

TgeneDPP6

GO:1901379

regulation of potassium ion transmembrane transport

18364354


check buttonFusion gene breakpoints across BRAF (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across DPP6 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-RD-A7BT-01ABRAFchr7

140624366

-DPP6chr7

154143299

+


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Fusion Gene ORF analysis for BRAF-DPP6

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000288602ENST00000427557BRAFchr7

140624366

-DPP6chr7

154143299

+
5CDS-3UTRENST00000288602ENST00000496611BRAFchr7

140624366

-DPP6chr7

154143299

+
In-frameENST00000288602ENST00000332007BRAFchr7

140624366

-DPP6chr7

154143299

+
In-frameENST00000288602ENST00000377770BRAFchr7

140624366

-DPP6chr7

154143299

+
In-frameENST00000288602ENST00000404039BRAFchr7

140624366

-DPP6chr7

154143299

+
In-frameENST00000288602ENST00000406326BRAFchr7

140624366

-DPP6chr7

154143299

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000288602BRAFchr7140624366-ENST00000404039DPP6chr7154143299+4359199612553830
ENST00000288602BRAFchr7140624366-ENST00000406326DPP6chr7154143299+1565199611017318
ENST00000288602BRAFchr7140624366-ENST00000377770DPP6chr7154143299+3525199612553830
ENST00000288602BRAFchr7140624366-ENST00000332007DPP6chr7154143299+3525199612553830

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000288602ENST00000404039BRAFchr7140624366-DPP6chr7154143299+0.0008587990.9991412
ENST00000288602ENST00000406326BRAFchr7140624366-DPP6chr7154143299+0.0170413630.9829586
ENST00000288602ENST00000377770BRAFchr7140624366-DPP6chr7154143299+0.001576340.9984237
ENST00000288602ENST00000332007BRAFchr7140624366-DPP6chr7154143299+0.001576340.9984237

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Fusion Genomic Features for BRAF-DPP6


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
BRAFchr7140624365-DPP6chr7154143298+9.98E-060.99999
BRAFchr7140624365-DPP6chr7154143298+9.98E-060.99999

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for BRAF-DPP6


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr7:140624366/chr7:154143299)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
BRAF

P15056

DPP6

P42658

FUNCTION: Protein kinase involved in the transduction of mitogenic signals from the cell membrane to the nucleus (Probable). Phosphorylates MAP2K1, and thereby activates the MAP kinase signal transduction pathway (PubMed:21441910, PubMed:29433126). May play a role in the postsynaptic responses of hippocampal neurons (PubMed:1508179). {ECO:0000269|PubMed:1508179, ECO:0000269|PubMed:21441910, ECO:0000269|PubMed:29433126, ECO:0000305}.FUNCTION: Promotes cell surface expression of the potassium channel KCND2 (PubMed:15454437, PubMed:19441798). Modulates the activity and gating characteristics of the potassium channel KCND2 (PubMed:18364354). Has no dipeptidyl aminopeptidase activity (PubMed:8103397, PubMed:15476821). {ECO:0000269|PubMed:15454437, ECO:0000269|PubMed:18364354, ECO:0000269|PubMed:8103397, ECO:0000305|PubMed:15476821}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-1186_1146767.0Compositional biasNote=Poly-Gly
TgeneDPP6chr7:140624366chr7:154143299ENST00000332007026117_86519804.0Topological domainExtracellular
TgeneDPP6chr7:140624366chr7:154143299ENST00000377770026117_86581866.0Topological domainExtracellular
TgeneDPP6chr7:140624366chr7:154143299ENST0000033200702696_11619804.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneDPP6chr7:140624366chr7:154143299ENST0000037777002696_11681866.0TransmembraneHelical%3B Signal-anchor for type II membrane protein

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118122_12946767.0Compositional biasNote=Poly-Ser
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118428_43246767.0Compositional biasNote=Poly-Ser
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118155_22746767.0DomainRBD
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118457_71746767.0DomainProtein kinase
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118463_47146767.0Nucleotide bindingATP
HgeneBRAFchr7:140624366chr7:154143299ENST00000288602-118234_28046767.0Zinc fingerPhorbol-ester/DAG-type
TgeneDPP6chr7:140624366chr7:154143299ENST000003320070261_9519804.0Topological domainCytoplasmic
TgeneDPP6chr7:140624366chr7:154143299ENST000003777700261_9581866.0Topological domainCytoplasmic


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Fusion Gene Sequence for BRAF-DPP6


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>10123_10123_1_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000332007_length(transcript)=3525nt_BP=199nt
CGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGG
CGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGA
CCCTGCCATTCCGGAGGAGGAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGT
CATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAGCGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGA
TCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTGATACAGAATTCATCTACAGAGAACAGAAAGGAACAGT
GAGACTGTGGAATGTTGAAACAAATACTTCTACTGTCTTAATAGAAGGCAAAAAAATTGAATCATTAAGAGCCATCAGATATGAAATATC
TCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCCATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCC
TCATGGGGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTGAT
ATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTA
CAATGGCCTCAGTGACTGGCTGTATGAAGAGGAGATTTTGAAGACACACATCGCACACTGGTGGTCTCCGGATGGCACGAGACTCGCCTA
CGCCGCCATCAATGATTCCCGTGTCCCCATCATGGAGCTCCCAACTTACACCGGCTCCATCTACCCCACCGTGAAGCCCTACCACTATCC
CAAGGCTGGAAGTGAGAACCCCAGCATTTCCCTACACGTTATTGGCTTAAATGGACCCACCCATGATCTGGAGATGATGCCGCCTGATGA
TCCACGGATGAGGGAGTACTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTCGCCGTGACCTGGCTGAACCGGGCGCAGAACGT
GTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACGAAGAAACACGAGGATGAAAGTGAGGCCTGGCTCCACAGACAGAATGA
AGAACCTGTGTTCTCCAAGGATGGCCGAAAGTTTTTCTTCATCAGAGCCATCCCCCAGGGAGGACGAGGGAAATTCTATCACATCACGGT
GTCCTCGTCCCAGCCCAACAGCAGCAACGACAACATCCAGTCCATCACCTCCGGGGACTGGGACGTGACCAAGATCCTAGCCTACGATGA
GAAGGGGAATAAGATCTACTTCCTGAGCACGGAGGACCTGCCTCGGAGACGACAACTCTACAGTGCCAACACGGTGGGCAACTTCAACAG
GCAGTGCCTCTCCTGTGACCTGGTTGAGAACTGCACCTACTTCAGCGCTTCCTTCAGCCATAGCATGGACTTCTTCCTGCTCAAGTGCGA
AGGTCCTGGTGTTCCTATGGTGACGGTGCACAACACAACAGATAAGAAAAAAATGTTTGACCTAGAAACAAATGAACATGTCAAGAAGGC
CATAAATGACCGACAGATGCCTAAAGTGGAATACAGGGACATTGAGATTGATGATTACAACCTGCCCATGCAGATACTGAAGCCAGCAAC
CTTCACCGACACCACCCACTACCCTCTGCTCCTGGTGGTGGATGGCACCCCAGGCAGCCAGAGTGTGGCTGAGAAGTTCGAGGTGAGCTG
GGAGACGGTGATGGTGAGCAGCCACGGCGCGGTGGTGGTAAAGTGTGACGGCCGTGGCAGCGGCTTCCAAGGGACCAAGCTCCTGCACGA
AGTGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATGGAGGCCGTGCGGACGATGCTGAAGGAGCAGTACATTGACAGGACGCG
CGTGGCCGTGTTTGGGAAGGATTACGGTGGCTACCTGAGCACCTACATCCTCCCAGCAAAGGGAGAAAATCAAGGCCAGACATTCACCTG
CGGCTCTGCTCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCGTTTTCCGAGAGGTACTTGGGCCTCCATGGACTTGACAACAG
AGCATACGAGATGACCAAGGTAGCCCATCGAGTCTCCGCGCTGGAAGAACAGCAGTTCCTGATCATTCATCCCACTGCCGATGAAAAAAT
TCATTTCCAGCACACAGCAGAACTCATTACACAACTAATTAGGGGAAAGGCTAATTACAGCTTACAGATTTACCCGGACGAAAGCCATTA
CTTTACCAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACTTCTTCGTGGAATGCTTCAGGATCCAGGACAAACTGCTGAC
AGTCACAGCGAAAGAGGACGAGGAGGAGGACTAAGCTCAGGTCGCTCTAAGCACAAACGTGGCTCTTTCTACAACCAGATGCAACCGAGG
GATTTCCCTGCCCTCCCTCTTCCCTCGGAGGGGCGGGGCGGGGCGGGGCCGGGTGTTCCATAGCATGTGTGTCTCGGATGCGGAAGGCAG
TTTTGCTTGGGAAACAAGCTCCTTCCCCGGGGTCATCACTCACGGCCTCCATGGCACCAGGGACAACGCTGTCCCCGCAGCAGCGCCTCC
TCCCGGCGCCCGAGAGACCGGCACGCCACGGCCCCTCCCCCAAGGAACAGAGCAAAGGATGGTGGCCGCAGGCCCCACGCGAGCCCACAG
GACACCGGCCCCTAGATTCCAGCCACCAAGCGGAAGCATGAGACCCGCCCACACTAGCCTCTGTGTTCCCGTTAGGGACATCACACCCTG
TCTCACGTCGCAGTGCCATGGACGCAGCAGTTACAGCACCATTGTTTTAGCAGTGCGTGTTCATATATGGGCTTGCTACTTCCTGTAATG
AGGACGTTCAACATGGTGAGGGGCTACAAGAAAACGCTTTTCTGTACAGAGTCTTACTGTAGCTACGCTAATGGTTAACCTGATAGAATT
AACTCGTATTTTTCTATGGTTTTAACCTGATGCTCCACTGTCTCCGTCATGGGGTTGTTTTGCTGTTTGGGGTTGGGCCTTGTTTCCCTT
TCCTTTCTCCAGTCCACGTGTAGACTTTGCGCTTGATGAAGAAGCAGATCGGAAGTAACTGCTCCCTCCTCAAGGTTGTCTTCAGACGTC
TTGGGGACGTTCCTAAACACTGAGGGGGAAGACAGCCAATAGCACCCATTAAAAGAAATACCTAAATAAAACCTCTCTCCCACTCAGCTA
TGCTAGGGCTTGGCTGTAGGTGTGCACTGTCTATTTACATCCGTCCTTACAACCATCCTTGTCCTCCTTGGTACCGTATCAAGCTCTTTC

>10123_10123_1_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000332007_length(amino acids)=830AA_BP=46
MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEEELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDNSL
SQKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY
TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW
WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA
VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW
DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD
LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGS
GFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSER
YLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVE

--------------------------------------------------------------
>10123_10123_2_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000377770_length(transcript)=3525nt_BP=199nt
CGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGG
CGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGA
CCCTGCCATTCCGGAGGAGGAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGT
CATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAGCGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGA
TCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTGATACAGAATTCATCTACAGAGAACAGAAAGGAACAGT
GAGACTGTGGAATGTTGAAACAAATACTTCTACTGTCTTAATAGAAGGCAAAAAAATTGAATCATTAAGAGCCATCAGATATGAAATATC
TCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCCATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCC
TCATGGGGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTGAT
ATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTA
CAATGGCCTCAGTGACTGGCTGTATGAAGAGGAGATTTTGAAGACACACATCGCACACTGGTGGTCTCCGGATGGCACGAGACTCGCCTA
CGCCGCCATCAATGATTCCCGTGTCCCCATCATGGAGCTCCCAACTTACACCGGCTCCATCTACCCCACCGTGAAGCCCTACCACTATCC
CAAGGCTGGAAGTGAGAACCCCAGCATTTCCCTACACGTTATTGGCTTAAATGGACCCACCCATGATCTGGAGATGATGCCGCCTGATGA
TCCACGGATGAGGGAGTACTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTCGCCGTGACCTGGCTGAACCGGGCGCAGAACGT
GTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACGAAGAAACACGAGGATGAAAGTGAGGCCTGGCTCCACAGACAGAATGA
AGAACCTGTGTTCTCCAAGGATGGCCGAAAGTTTTTCTTCATCAGAGCCATCCCCCAGGGAGGACGAGGGAAATTCTATCACATCACGGT
GTCCTCGTCCCAGCCCAACAGCAGCAACGACAACATCCAGTCCATCACCTCCGGGGACTGGGACGTGACCAAGATCCTAGCCTACGATGA
GAAGGGGAATAAGATCTACTTCCTGAGCACGGAGGACCTGCCTCGGAGACGACAACTCTACAGTGCCAACACGGTGGGCAACTTCAACAG
GCAGTGCCTCTCCTGTGACCTGGTTGAGAACTGCACCTACTTCAGCGCTTCCTTCAGCCATAGCATGGACTTCTTCCTGCTCAAGTGCGA
AGGTCCTGGTGTTCCTATGGTGACGGTGCACAACACAACAGATAAGAAAAAAATGTTTGACCTAGAAACAAATGAACATGTCAAGAAGGC
CATAAATGACCGACAGATGCCTAAAGTGGAATACAGGGACATTGAGATTGATGATTACAACCTGCCCATGCAGATACTGAAGCCAGCAAC
CTTCACCGACACCACCCACTACCCTCTGCTCCTGGTGGTGGATGGCACCCCAGGCAGCCAGAGTGTGGCTGAGAAGTTCGAGGTGAGCTG
GGAGACGGTGATGGTGAGCAGCCACGGCGCGGTGGTGGTAAAGTGTGACGGCCGTGGCAGCGGCTTCCAAGGGACCAAGCTCCTGCACGA
AGTGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATGGAGGCCGTGCGGACGATGCTGAAGGAGCAGTACATTGACAGGACGCG
CGTGGCCGTGTTTGGGAAGGATTACGGTGGCTACCTGAGCACCTACATCCTCCCAGCAAAGGGAGAAAATCAAGGCCAGACATTCACCTG
CGGCTCTGCTCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCGTTTTCCGAGAGGTACTTGGGCCTCCATGGACTTGACAACAG
AGCATACGAGATGACCAAGGTAGCCCATCGAGTCTCCGCGCTGGAAGAACAGCAGTTCCTGATCATTCATCCCACTGCCGATGAAAAAAT
TCATTTCCAGCACACAGCAGAACTCATTACACAACTAATTAGGGGAAAGGCTAATTACAGCTTACAGATTTACCCGGACGAAAGCCATTA
CTTTACCAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACTTCTTCGTGGAATGCTTCAGGATCCAGGACAAACTGCTGAC
AGTCACAGCGAAAGAGGACGAGGAGGAGGACTAAGCTCAGGTCGCTCTAAGCACAAACGTGGCTCTTTCTACAACCAGATGCAACCGAGG
GATTTCCCTGCCCTCCCTCTTCCCTCGGAGGGGCGGGGCGGGGCGGGGCCGGGTGTTCCATAGCATGTGTGTCTCGGATGCGGAAGGCAG
TTTTGCTTGGGAAACAAGCTCCTTCCCCGGGGTCATCACTCACGGCCTCCATGGCACCAGGGACAACGCTGTCCCCGCAGCAGCGCCTCC
TCCCGGCGCCCGAGAGACCGGCACGCCACGGCCCCTCCCCCAAGGAACAGAGCAAAGGATGGTGGCCGCAGGCCCCACGCGAGCCCACAG
GACACCGGCCCCTAGATTCCAGCCACCAAGCGGAAGCATGAGACCCGCCCACACTAGCCTCTGTGTTCCCGTTAGGGACATCACACCCTG
TCTCACGTCGCAGTGCCATGGACGCAGCAGTTACAGCACCATTGTTTTAGCAGTGCGTGTTCATATATGGGCTTGCTACTTCCTGTAATG
AGGACGTTCAACATGGTGAGGGGCTACAAGAAAACGCTTTTCTGTACAGAGTCTTACTGTAGCTACGCTAATGGTTAACCTGATAGAATT
AACTCGTATTTTTCTATGGTTTTAACCTGATGCTCCACTGTCTCCGTCATGGGGTTGTTTTGCTGTTTGGGGTTGGGCCTTGTTTCCCTT
TCCTTTCTCCAGTCCACGTGTAGACTTTGCGCTTGATGAAGAAGCAGATCGGAAGTAACTGCTCCCTCCTCAAGGTTGTCTTCAGACGTC
TTGGGGACGTTCCTAAACACTGAGGGGGAAGACAGCCAATAGCACCCATTAAAAGAAATACCTAAATAAAACCTCTCTCCCACTCAGCTA
TGCTAGGGCTTGGCTGTAGGTGTGCACTGTCTATTTACATCCGTCCTTACAACCATCCTTGTCCTCCTTGGTACCGTATCAAGCTCTTTC

>10123_10123_2_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000377770_length(amino acids)=830AA_BP=46
MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEEELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDNSL
SQKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY
TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW
WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA
VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW
DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD
LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGS
GFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSER
YLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVE

--------------------------------------------------------------
>10123_10123_3_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000404039_length(transcript)=4359nt_BP=199nt
CGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGG
CGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGA
CCCTGCCATTCCGGAGGAGGAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGT
CATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAGCGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGA
TCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTGATACAGAATTCATCTACAGAGAACAGAAAGGAACAGT
GAGACTGTGGAATGTTGAAACAAATACTTCTACTGTCTTAATAGAAGGCAAAAAAATTGAATCATTAAGAGCCATCAGATATGAAATATC
TCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCCATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCC
TCATGGGGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTGAT
ATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTA
CAATGGCCTCAGTGACTGGCTGTATGAAGAGGAGATTTTGAAGACACACATCGCACACTGGTGGTCTCCGGATGGCACGAGACTCGCCTA
CGCCGCCATCAATGATTCCCGTGTCCCCATCATGGAGCTCCCAACTTACACCGGCTCCATCTACCCCACCGTGAAGCCCTACCACTATCC
CAAGGCTGGAAGTGAGAACCCCAGCATTTCCCTACACGTTATTGGCTTAAATGGACCCACCCATGATCTGGAGATGATGCCGCCTGATGA
TCCACGGATGAGGGAGTACTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTCGCCGTGACCTGGCTGAACCGGGCGCAGAACGT
GTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACGAAGAAACACGAGGATGAAAGTGAGGCCTGGCTCCACAGACAGAATGA
AGAACCTGTGTTCTCCAAGGATGGCCGAAAGTTTTTCTTCATCAGAGCCATCCCCCAGGGAGGACGAGGGAAATTCTATCACATCACGGT
GTCCTCGTCCCAGCCCAACAGCAGCAACGACAACATCCAGTCCATCACCTCCGGGGACTGGGACGTGACCAAGATCCTAGCCTACGATGA
GAAGGGGAATAAGATCTACTTCCTGAGCACGGAGGACCTGCCTCGGAGACGACAACTCTACAGTGCCAACACGGTGGGCAACTTCAACAG
GCAGTGCCTCTCCTGTGACCTGGTTGAGAACTGCACCTACTTCAGCGCTTCCTTCAGCCATAGCATGGACTTCTTCCTGCTCAAGTGCGA
AGGTCCTGGTGTTCCTATGGTGACGGTGCACAACACAACAGATAAGAAAAAAATGTTTGACCTAGAAACAAATGAACATGTCAAGAAGGC
CATAAATGACCGACAGATGCCTAAAGTGGAATACAGGGACATTGAGATTGATGATTACAACCTGCCCATGCAGATACTGAAGCCAGCAAC
CTTCACCGACACCACCCACTACCCTCTGCTCCTGGTGGTGGATGGCACCCCAGGCAGCCAGAGTGTGGCTGAGAAGTTCGAGGTGAGCTG
GGAGACGGTGATGGTGAGCAGCCACGGCGCGGTGGTGGTAAAGTGTGACGGCCGTGGCAGCGGCTTCCAAGGGACCAAGCTCCTGCACGA
AGTGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATGGAGGCCGTGCGGACGATGCTGAAGGAGCAGTACATTGACAGGACGCG
CGTGGCCGTGTTTGGGAAGGATTACGGTGGCTACCTGAGCACCTACATCCTCCCAGCAAAGGGAGAAAATCAAGGCCAGACATTCACCTG
CGGCTCTGCTCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCGTTTTCCGAGAGGTACTTGGGCCTCCATGGACTTGACAACAG
AGCATACGAGATGACCAAGGTAGCCCATCGAGTCTCCGCGCTGGAAGAACAGCAGTTCCTGATCATTCATCCCACTGCCGATGAAAAAAT
TCATTTCCAGCACACAGCAGAACTCATTACACAACTAATTAGGGGAAAGGCTAATTACAGCTTACAGATTTACCCGGACGAAAGCCATTA
CTTTACCAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACTTCTTCGTGGAATGCTTCAGGATCCAGGACAAACTGCTGAC
AGTCACAGCGAAAGAGGACGAGGAGGAGGACTAAGCTCAGGTCGCTCTAAGCACAAACGTGGCTCTTTCTACAACCAGATGCAACCGAGG
GATTTCCCTGCCCTCCCTCTTCCCTCGGAGGGGCGGGGCGGGGCGGGGCCGGGTGTTCCATAGCATGTGTGTCTCGGATGCGGAAGGCAG
TTTTGCTTGGGAAACAAGCTCCTTCCCCGGGGTCATCACTCACGGCCTCCATGGCACCAGGGACAACGCTGTCCCCGCAGCAGCGCCTCC
TCCCGGCGCCCGAGAGACCGGCACGCCACGGCCCCTCCCCCAAGGAACAGAGCAAAGGATGGTGGCCGCAGGCCCCACGCGAGCCCACAG
GACACCGGCCCCTAGATTCCAGCCACCAAGCGGAAGCATGAGACCCGCCCACACTAGCCTCTGTGTTCCCGTTAGGGACATCACACCCTG
TCTCACGTCGCAGTGCCATGGACGCAGCAGTTACAGCACCATTGTTTTAGCAGTGCGTGTTCATATATGGGCTTGCTACTTCCTGTAATG
AGGACGTTCAACATGGTGAGGGGCTACAAGAAAACGCTTTTCTGTACAGAGTCTTACTGTAGCTACGCTAATGGTTAACCTGATAGAATT
AACTCGTATTTTTCTATGGTTTTAACCTGATGCTCCACTGTCTCCGTCATGGGGTTGTTTTGCTGTTTGGGGTTGGGCCTTGTTTCCCTT
TCCTTTCTCCAGTCCACGTGTAGACTTTGCGCTTGATGAAGAAGCAGATCGGAAGTAACTGCTCCCTCCTCAAGGTTGTCTTCAGACGTC
TTGGGGACGTTCCTAAACACTGAGGGGGAAGACAGCCAATAGCACCCATTAAAAGAAATACCTAAATAAAACCTCTCTCCCACTCAGCTA
TGCTAGGGCTTGGCTGTAGGTGTGCACTGTCTATTTACATCCGTCCTTACAACCATCCTTGTCCTCCTTGGTACCGTATCAAGCTCTTTC
CCATGACATTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAAAAGACAAAGCGTCAACTCCACCCACAGGCCCGCTGTGTG
TGCTCGGGCCACGGGAGTCCTGAGGGTTCTGTGGGCCTGCGCGCATCCCTCTCCCATCGTGGGGGTGGCTCCGTGACCTTCCTGCCACGA
GCAGGAGGTTGATGATGTGCTACGTTAGCCTTGTAAGATACACCCCCACCAAATGTGCAGCCGGTGTTCCCAGTGTATATTTCATTCTCT
TGTATATAAAGGAAGCAATGTGTGTCAGGCCTCTGTGCAGTCAACCCAGCCTCCTCCCGCCAGTGCTAACCCCGTGTTGAGCCTGCATGC
TGACACTGTGGCCGATCTGGACTCTAGAAGTGCTAGTTTGAAATATATCCATTACTGTCATTTCCTTTTGAGCTTGTGGACAAGCTGAAT
GTCAGGACTGACTTCGCCAGCTCCCAGCCCTGCGGGGGTGTCCTTGGCATCCCATCAGCAGAGGAGATGCGTCCCTGTTGCATTTTGGCG
TTTGGGGCTTTGGGTTTATCCACATGAGCTCTGAACGTCCGTTATAGTTAGGGTGATTGGAAGGTCTCCATCACTGGGTGTTTTAAAGGT
GATTCACCACCATTTGTGAAAGGACCAACGTGCTGATAAACAGGACCGATCCGAGTGCTACATGACTGTGCGTTTGCTATTTCAATGGGC
CTGAACGACTACAAAGCCAGCTAGGTCTGGAAGGGGAAGCCAGCTCTGGCCACGACATCTGGTCGGAGGGAAGTGGGGATGTGGCATGGT

>10123_10123_3_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000404039_length(amino acids)=830AA_BP=46
MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEEELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDNSL
SQKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY
TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW
WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA
VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW
DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD
LETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGS
GFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSER
YLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVE

--------------------------------------------------------------
>10123_10123_4_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000406326_length(transcript)=1565nt_BP=199nt
CGCCTCCCTTCCCCCTCCCCGCCCGACAGCGGCCGCTCGGGCCCCGGCTCTCGGTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGG
CGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGA
CCCTGCCATTCCGGAGGAGGAGCTGGTGGGGAGTAACCCTCCGCAGAGGAATTGGAAAGGAATAGCAATTGCACTGCTTGTCATTCTGGT
CATCTGCTCCTTGATCGTCACCTCGGTCATACTTCTGACACCAGCGGAAGATAATAGTCTGTCTCAAAAGAAGAAGGTCACTGTAGAAGA
TCTCTTCAGTGAAGACTTCAAAATTCATGACCCCGAGGCTAAGTGGATAAGTGATACAGAATTCATCTACAGAGAACAGAAAGGAACAGT
GAGACTGTGGAATGTTGAAACAAATACTTCTACTGTCTTAATAGAAGGCAAAAAAATTGAATCATTAAGAGCCATCAGATATGAAATATC
TCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCCATGAAGAAAGTGAAGTCCAGGAAGTTGACATTGCCTCATTCAAAATC
ATGTGACTCATTAGCAGTAAGTCAAGCCTGTAGCCCAGCTTGTCACCAGGGCTGTTTTCTTCATTACATCACCATGTCTCTTCCTCTTCA
CTGCCTGCGTGACTATGTCTCGGCAGTCAATGGATACAGCACAGCATTGCCAGCTTGCCATGTACAAGGGGGACCTGTTTCAGATATTCC
ATGGAGACCCTGGCTGGAGGATTGCAGGAGAGTCCCAGGAGGCAGGACTGCCAATGGCACCAGGCTTCGCAGCCATGCACCTGCAGCCCT
CAGGCAGCACTGTCCATTGTCATACGAGTGTGGCAGGTGTGAGGCATCGCATCTGCTCACCCCGGGGATAATGCACAGCAGCTACAGGCA
GATTTCGGGCCAGAGAGCAACCGAGTGAGCCTTGCAGCCTCTGCTGCCAGCACAGGCTTGTTCCTTCAACACTGGTGGAGAGAGACACGC
TGTCATCAGGCCCAAGAAATACTGCCTTCCCCATCCTATCCCTGGTCACTGGGTGCCCGCAGAGTGTCCCAGAGGAGGGAGGGAGGGACC
CTCCACTGGTTCAAATGGCCTGTTCTCAGAGATGCAGCAATGGACCCTCGTGAATACTGAACTGATAATCATGGGAAGGAGACTGGCTCT
CCTGGATTCCCTCATGATTCCTCTGAGTGACAATGTGATGTTGGCCGACTGTGTCTTCTTCAGAATATCATATACACTTGAGGTCTCCAG
GAGCCTCCAATTACATTATTTTCCTGGCTCATACAGTGACAAGTAATTCTTATCCTGGATTCCTCGTTACTGAGACTTTTCTTGCCTTTT
TTGTTAGCTTATGATTTATTCTAGGACTTCCTCCAACAGGTTATACTTAACTGTCTACCTCAGTCTCTGGAAGTTTTAAAAATGTTCAGC

>10123_10123_4_BRAF-DPP6_BRAF_chr7_140624366_ENST00000288602_DPP6_chr7_154143299_ENST00000406326_length(amino acids)=318AA_BP=46
MAALSGGGGGGAEPGQALFNGDMEPEAGAGAGAAASSAADPAIPEEELVGSNPPQRNWKGIAIALLVILVICSLIVTSVILLTPAEDNSL
SQKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPMKKVKS
RKLTLPHSKSCDSLAVSQACSPACHQGCFLHYITMSLPLHCLRDYVSAVNGYSTALPACHVQGGPVSDIPWRPWLEDCRRVPGGRTANGT

--------------------------------------------------------------

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Fusion Gene PPI Analysis for BRAF-DPP6


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for BRAF-DPP6


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for BRAF-DPP6


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource