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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:ZNRD1-LMBRD1 (FusionGDB2 ID:103142)

Fusion Gene Summary for ZNRD1-LMBRD1

Fusion gene summary

Fusion gene information	Fusion gene name: ZNRD1-LMBRD1
	Fusion gene ID: 103142
		Hgene	Tgene
	Gene symbol	ZNRD1	LMBRD1
	Gene ID	30834	55788
	Gene name	zinc ribbon domain containing 1	LMBR1 domain containing 1
	Synonyms	A12.2\|HTEX-6\|HTEX6\|Rpa12\|TCTEX6\|TEX6\|ZR14\|hZR14\|tctex-6	C6orf209\|LMBD1\|MAHCF\|NESI
	Cytomap	6p22.1	6q13
	Type of gene	protein-coding	protein-coding
	Description	DNA-directed RNA polymerase I subunit RPA12RNA polymerase I small specific subunit Rpa12transcription-associated zinc ribbon protein	probable lysosomal cobalamin transporterHDAg-L-interacting protein NESIhepatitis delta antigen-L interacting proteinliver regeneration p-53 related proteinnuclear export signal-interacting protein
	Modification date	20200313	20200313
	UniProtAcc	.	Q9NUN5
	Ensembl transtripts involved in fusion gene	ENST00000332435, ENST00000359374, ENST00000376782, ENST00000376785, ENST00000463141, ENST00000383613, ENST00000400659, ENST00000400660, ENST00000400662, ENST00000412396, ENST00000417275, ENST00000417738, ENST00000420100, ENST00000428913, ENST00000429558, ENST00000431032, ENST00000431416, ENST00000432227, ENST00000432545, ENST00000432904, ENST00000433264, ENST00000437373, ENST00000437507, ENST00000441251, ENST00000442585, ENST00000443142, ENST00000443494, ENST00000444027, ENST00000444794, ENST00000446493, ENST00000451875, ENST00000453694, ENST00000455948, ENST00000459984, ENST00000471263, ENST00000472459, ENST00000476397, ENST00000476699, ENST00000477956, ENST00000484119,	ENST00000370570, ENST00000370577,
Fusion gene scores	* DoF score	2 X 1 X 1=2	11 X 9 X 6=594
	# samples	2	12
	** MAII score	log2(2/2*10)=3.32192809488736	log2(12/594*10)=-2.30742852519225 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: ZNRD1 [Title/Abstract] AND LMBRD1 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	ZNRD1(30032684)-LMBRD1(70434203), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner

Gene

GO ID

GO term

PubMed ID

Fusion gene breakpoints across ZNRD1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across LMBRD1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	AF024616	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+

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Fusion Gene ORF analysis for ZNRD1-LMBRD1

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
5CDS-intron	ENST00000332435	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000332435	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000359374	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000359374	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000376782	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000376782	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000376785	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000376785	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000463141	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
5CDS-intron	ENST00000463141	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000383613	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000383613	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400659	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400659	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400660	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400660	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400662	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000400662	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000412396	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000412396	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000417275	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000417275	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000417738	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000417738	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000420100	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000420100	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000428913	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000428913	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000429558	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000429558	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000431032	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000431032	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000431416	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000431416	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432227	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432227	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432545	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432545	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432904	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000432904	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000433264	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000433264	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000437373	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000437373	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000437507	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000437507	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000441251	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000441251	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000442585	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000442585	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000443142	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000443142	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000443494	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000443494	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000444027	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000444027	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000444794	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000444794	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000446493	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000446493	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000451875	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000451875	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000453694	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000453694	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000455948	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000455948	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000459984	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000459984	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000471263	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000471263	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000472459	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000472459	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000476397	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000476397	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000476699	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000476699	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000477956	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000477956	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000484119	ENST00000370570	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+
intron-intron	ENST00000484119	ENST00000370577	ZNRD1	chr6	30032684	+	LMBRD1	chr6	70434203	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for ZNRD1-LMBRD1

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for ZNRD1-LMBRD1

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:30032684/:70434203)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
.	LMBRD1 Q9NUN5
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.	FUNCTION: Lysosomal membrane chaperone required to export cobalamin (vitamin B12) from the lysosome to the cytosol, allowing its conversion to cofactors (PubMed:19136951). Targets ABCD4 transporter from the endoplasmic reticulum to the lysosome (PubMed:27456980). Then forms a complex with lysosomal ABCD4 and cytoplasmic MMACHC to transport cobalamin across the lysosomal membrane (PubMed:25535791). {ECO:0000269\|PubMed:19136951, ECO:0000269\|PubMed:27456980, ECO:0000303\|PubMed:25535791}.; FUNCTION: [Isoform 3]: (Microbial infection) May play a role in the assembly of hepatitis delta virus (HDV). {ECO:0000269\|PubMed:15956556}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

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Fusion Gene Sequence for ZNRD1-LMBRD1

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ZNRD1-LMBRD1

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs for ZNRD1-LMBRD1

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for ZNRD1-LMBRD1

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source