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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:CADPS2-RPGR (FusionGDB2 ID:12478) |
Fusion Gene Summary for CADPS2-RPGR |
Fusion gene summary |
Fusion gene information | Fusion gene name: CADPS2-RPGR | Fusion gene ID: 12478 | Hgene | Tgene | Gene symbol | CADPS2 | RPGR | Gene ID | 93664 | 6103 |
Gene name | calcium dependent secretion activator 2 | retinitis pigmentosa GTPase regulator | |
Synonyms | CAPS2 | COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 | |
Cytomap | 7q31.32 | Xp11.4 | |
Type of gene | protein-coding | protein-coding | |
Description | calcium-dependent secretion activator 2CAPS-2Ca++-dependent secretion activator 2Ca2+ dependent secretion activator 2Ca2+-dependent activator protein for secretion 2calcium-dependent activator protein for secretion 2 | X-linked retinitis pigmentosa GTPase regulatorretinitis pigmentosa 15retinitis pigmentosa 3 GTPase regulator | |
Modification date | 20200313 | 20200329 | |
UniProtAcc | Q86UW7 | . | |
Ensembl transtripts involved in fusion gene | ENST00000313070, ENST00000334010, ENST00000412584, ENST00000449022, ENST00000476131, | ENST00000309513, ENST00000338898, ENST00000339363, ENST00000342811, ENST00000378505, ENST00000318842, | |
Fusion gene scores | * DoF score | 12 X 11 X 7=924 | 4 X 3 X 3=36 |
# samples | 14 | 4 | |
** MAII score | log2(14/924*10)=-2.72246602447109 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: CADPS2 [Title/Abstract] AND RPGR [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | CADPS2(122078395)-RPGR(38150737), # samples:2 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene breakpoints across CADPS2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RPGR (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | CESC | TCGA-Q1-A6DW-01A | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
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Fusion Gene ORF analysis for CADPS2-RPGR |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000313070 | ENST00000309513 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000313070 | ENST00000338898 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000313070 | ENST00000339363 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000313070 | ENST00000342811 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000313070 | ENST00000378505 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000334010 | ENST00000309513 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000334010 | ENST00000338898 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000334010 | ENST00000339363 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000334010 | ENST00000342811 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000334010 | ENST00000378505 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000412584 | ENST00000309513 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000412584 | ENST00000338898 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000412584 | ENST00000339363 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000412584 | ENST00000342811 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000412584 | ENST00000378505 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000449022 | ENST00000309513 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000449022 | ENST00000338898 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000449022 | ENST00000339363 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000449022 | ENST00000342811 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
5CDS-intron | ENST00000449022 | ENST00000378505 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
In-frame | ENST00000313070 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
In-frame | ENST00000334010 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
In-frame | ENST00000412584 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
In-frame | ENST00000449022 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-3CDS | ENST00000476131 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-intron | ENST00000476131 | ENST00000309513 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-intron | ENST00000476131 | ENST00000338898 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-intron | ENST00000476131 | ENST00000339363 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-intron | ENST00000476131 | ENST00000342811 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
intron-intron | ENST00000476131 | ENST00000378505 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000313070 | CADPS2 | chr7 | 122078395 | - | ENST00000318842 | RPGR | chrX | 38150737 | - | 4386 | 2889 | 422 | 3922 | 1166 |
ENST00000334010 | CADPS2 | chr7 | 122078395 | - | ENST00000318842 | RPGR | chrX | 38150737 | - | 4398 | 2901 | 422 | 3934 | 1170 |
ENST00000412584 | CADPS2 | chr7 | 122078395 | - | ENST00000318842 | RPGR | chrX | 38150737 | - | 4085 | 2588 | 121 | 3621 | 1166 |
ENST00000449022 | CADPS2 | chr7 | 122078395 | - | ENST00000318842 | RPGR | chrX | 38150737 | - | 3993 | 2496 | 20 | 3529 | 1169 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000313070 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - | 0.000690551 | 0.9993094 |
ENST00000334010 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - | 0.000839658 | 0.9991604 |
ENST00000412584 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - | 0.000492579 | 0.9995074 |
ENST00000449022 | ENST00000318842 | CADPS2 | chr7 | 122078395 | - | RPGR | chrX | 38150737 | - | 0.000699624 | 0.99930036 |
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Fusion Genomic Features for CADPS2-RPGR |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for CADPS2-RPGR |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr7:122078395/chrX:38150737) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
CADPS2 | . |
FUNCTION: Calcium-binding protein involved in exocytosis of vesicles filled with neurotransmitters and neuropeptides. Probably acts upstream of fusion in the biogenesis or maintenance of mature secretory vesicles. Regulates neurotrophin release from granule cells leading to regulate cell differentiation and survival during cerebellar development. May specifically mediate the Ca(2+)-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000412584 | - | 16 | 28 | 350_464 | 822 | 1256.0 | Domain | C2 |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000412584 | - | 16 | 28 | 487_590 | 822 | 1256.0 | Domain | PH |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000449022 | - | 17 | 30 | 350_464 | 825 | 1297.0 | Domain | C2 |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000449022 | - | 17 | 30 | 487_590 | 825 | 1297.0 | Domain | PH |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 530_903 | 409 | 754.0 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 530_903 | 471 | 816.0 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 530_903 | 0 | 631.3333333333334 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 530_903 | 471 | 1021.0 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 530_903 | 471 | 647.0 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 530_903 | 471 | 1153.0 | Compositional bias | Note=Glu-rich | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 106_158 | 0 | 631.3333333333334 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 159_208 | 0 | 631.3333333333334 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 209_261 | 0 | 631.3333333333334 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 262_313 | 0 | 631.3333333333334 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 314_367 | 0 | 631.3333333333334 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000338898 | 0 | 18 | 54_105 | 0 | 631.3333333333334 | Repeat | Note=RCC1 1 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000412584 | - | 16 | 28 | 885_1056 | 822 | 1256.0 | Domain | MHD1 |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000449022 | - | 17 | 30 | 885_1056 | 825 | 1297.0 | Domain | MHD1 |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 106_158 | 409 | 754.0 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 159_208 | 409 | 754.0 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 209_261 | 409 | 754.0 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 262_313 | 409 | 754.0 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 314_367 | 409 | 754.0 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000309513 | 9 | 18 | 54_105 | 409 | 754.0 | Repeat | Note=RCC1 1 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 106_158 | 471 | 816.0 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 159_208 | 471 | 816.0 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 209_261 | 471 | 816.0 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 262_313 | 471 | 816.0 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 314_367 | 471 | 816.0 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000318842 | 10 | 19 | 54_105 | 471 | 816.0 | Repeat | Note=RCC1 1 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 106_158 | 471 | 1021.0 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 159_208 | 471 | 1021.0 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 209_261 | 471 | 1021.0 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 262_313 | 471 | 1021.0 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 314_367 | 471 | 1021.0 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000339363 | 10 | 18 | 54_105 | 471 | 1021.0 | Repeat | Note=RCC1 1 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 106_158 | 471 | 647.0 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 159_208 | 471 | 647.0 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 209_261 | 471 | 647.0 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 262_313 | 471 | 647.0 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 314_367 | 471 | 647.0 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000342811 | 10 | 16 | 54_105 | 471 | 647.0 | Repeat | Note=RCC1 1 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 106_158 | 471 | 1153.0 | Repeat | Note=RCC1 2 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 159_208 | 471 | 1153.0 | Repeat | Note=RCC1 3 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 209_261 | 471 | 1153.0 | Repeat | Note=RCC1 4 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 262_313 | 471 | 1153.0 | Repeat | Note=RCC1 5 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 314_367 | 471 | 1153.0 | Repeat | Note=RCC1 6 | |
Tgene | RPGR | chr7:122078395 | chrX:38150737 | ENST00000378505 | 10 | 15 | 54_105 | 471 | 1153.0 | Repeat | Note=RCC1 1 |
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Fusion Gene Sequence for CADPS2-RPGR |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>12478_12478_1_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000313070_RPGR_chrX_38150737_ENST00000318842_length(transcript)=4386nt_BP=2889nt ATTCAATTCCACGTGTTGCTTGTTGTAGGCGCCACAGGTTCCCCACCTGCGTCCGGGCGCTCGGGCGGCTCCGCCTCTGCCGGCGGGCTC TGGGGAACCGCTGGGTCGGCGCGCCCGGGGCTGGCGGAGCAATTCCTGAGGCGCCCAAGCTCACCCCCAACGCTAACTCCGCCTATTCAG TCCCGGCGGCTCCCCCTCTCCCCCCTCCCAATCCTCCTCCCGGCTCCTGCCCGCCCCTTTCGCCCTGGTGGTAGGAAACACTCCTGAATC TAACTCGACGTGTCCGGAAAGCCCTGGCCAGTTTTCCTTTCGTTCTGCGGCCGCTGCAGCCAGCCCCGCGGCTCCCTCAGACCCGCGGGC GCAGCCGCCGGGGGTGAGGCGCTTGGGGACCGCGGGCCGAGCGGCGGGGATCCCCGAGCACCATGCTGGACCCGTCTTCCAGCGAAGAGG AGTCGGACGAGGGGCTGGAAGAGGAAAGCCGCGATGTGCTGGTGGCAGCCGGCAGCTCGCAGCGAGCTCCTCCAGCCCCGACTCGGGAAG GGCGGCGGGACGCGCCGGGGCGCGCGGGCGGCGGCGGCGCGGCCAGATCTGTGAGCCCGAGCCCCTCTGTGCTCAGCGAGGGGCGAGACG AGCCCCAGCGGCAGCTGGACGATGAGCAGGAGCGGAGGATCCGCCTGCAGCTCTACGTCTTCGTCGTGAGGTGCATCGCGTACCCCTTCA ACGCCAAGCAGCCCACCGACATGGCCCGGAGGCAGCAGAAGCTTAACAAACAACAGTTGCAGTTACTGAAAGAACGGTTCCAGGCCTTCC TCAATGGGGAAACCCAAATTGTAGCTGACGAAGCATTTTGCAACGCAGTTCGGAGTTATTATGAGGTTTTTCTAAAGAGTGACCGAGTGG CCAGAATGGTACAGAGTGGAGGGTGTTCTGCTAATGACTTCAGAGAAGTATTTAAGAAAAACATAGAAAAACGTGTGCGGAGTTTGCCAG AAATAGATGGCTTGAGCAAAGAGACAGTGTTGAGCTCATGGATAGCCAAATATGATGCCATTTACAGAGGTGAAGAGGACTTGTGCAAAC AGCCAAATAGAATGGCCCTAAGTGCAGTGTCTGAACTTATTCTGAGCAAGGAACAACTCTATGAAATGTTTCAGCAGATTCTGGGTATTA AAAAACTGGAACACCAGCTCCTTTATAATGCATGTCAGCTGGATAACGCAGATGAACAAGCAGCCCAGATCAGAAGGGAACTTGATGGCC GGCTGCAATTGGCAGATAAAATGGCAAAGGAAAGAAAATTCCCCAAATTTATAGCAAAAGATATGGAGAATATGTATATAGAAGAGTTGC GGTCTTCAGTGAATTTGCTAATGGCCAATTTGGAAAGTCTTCCAGTTTCGAAAGGTGGTCCGGAATTTAAATTACAAAAATTAAAACGTT CACAGAACTCTGCATTTTTGGACATAGGAGATGAGAATGAGATTCAGCTGTCAAAGTCCGACGTGGTACTGTCATTCACCTTAGAGATTG TCATAATGGAAGTGCAAGGCCTGAAGTCAGTTGCTCCCAATCGAATTGTTTACTGTACAATGGAAGTGGAAGGAGAAAAACTTCAGACAG ACCAGGCCGAAGCCTCAAGGCCACAATGGGGGACTCAAGGAGATTTCACCACCACCCATCCTCGGCCTGTGGTCAAAGTGAAACTCTTCA CAGAAAGCACTGGAGTTCTGGCCCTGGAAGATAAAGAACTGGGAAGGGTGATATTATACCCAACTTCTAATAGCTCCAAATCAGCTGAAT TACACCGAATGGTAGTTCCAAAAAATAGCCAGGATTCTGACTTAAAAATCAAACTGGCAGTGCGAATGGATAAACCAGCACATATGAAGC ATAGTGGATATCTGTATGCCCTTGGACAGAAGGTTTGGAAAAGATGGAAAAAACGTTACTTTGTTCTAGTTCAGGTTAGCCAATATACCT TTGCTATGTGCAGTTATAGAGAAAAGAAGTCTGAACCACAAGAATTAATGCAGCTTGAAGGCTATACTGTGGATTATACCGATCCCCACC CAGGCCTTCAGGGTGGTTGTATGTTCTTTAATGCTGTTAAAGAAGGAGATACTGTAATCTTTGCCAGTGATGATGAACAGGACAGAATAT TATGGGTTCAAGCCATGTATAGGGCCACAGGTCAATCATATAAACCAGTTCCTGCAATTCAAACCCAGAAACTGAATCCTAAAGGAGGAA CTCTCCATGCAGATGCTCAGCTTTATGCAGATCGTTTTCAGAAACATGGTATGGATGAGTTTATTTCTGCAAACCCCTGCAAGCTTGATC ATGCCTTCCTTTTTAGAATACTCCAGAGGCAGACTTTGGATCACAGACTGAATGATTCCTATTCTTGCTTGGGATGGTTTAGCCCTGGCC AAGTCTTTGTGTTAGATGAGTACTGTGCCCGTTATGGTGTGAGAGGCTGTCACAGACATCTCTGCTACCTTGCAGAACTGATGGAACATT CAGAAAATGGTGCTGTCATTGACCCTACCCTGCTCCATTACAGCTTTGCATTCTGTGCCTCTCATGTGCACGGCAACAGGCCTGATGGAA TTGGGACTGTTTCAGTGGAAGAAAAAGAAAGATTTGAGGAGATAAAAGAGAGACTCTCTTCCCTTTTAGAAAATCAGATAAGCCATTTCA GATACTGTTTTCCCTTTGGACGACCTGAAGGTGCTCTAAAAGCTACACTTTCATTACTTGAAAGGGTTTTAATGAAAGATATTGCCACTC CCATACCAGCAGAAGAGGTGAAGAAAGTGGTCAGAAAATGTCTCGAGAAAGCTGCCTTGATCAATTACACTAGACTCACAGAATATGCCA AAATAGAAGATTATTTGCTAGATGAAATGACCAAAGAAGCAGAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAGAAACTACTGATA TCTTAAACATGACACACATCATGAGCCTGAATTCCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGAAACAACAAACAA TTGGGGAACTGACGCAGGATACAGCTCTTACTGAAAACGATGATAGTGATGAATATGAAGAAATGTCAGAAATGAAAGAAGGGAAAGCAT GTAAACAACATGTGTCACAAGGGATTTTCATGACGCAGCCAGCTACGACTATCGAAGCATTTTCAGATGAGGAAGTAGAGATCCCAGAGG AGAAGGAAGGAGCAGAGGATTCAAAAGGAAATGGAATAGAGGAGCAAGAGGTAGAAGCAAATGAGGAAAATGTGAAGGTGCATGGAGGAA GAAAGGAGAAAACAGAGATCCTATCAGATGACCTTACAGACAAAGCAGAGGATCATGAATTTTCTAAAACTGAGGAACTAAAACTAGAAG ATGTGGATGAGGAAATTAATGCTGAAAATGTGGAAAGCAAGAAGAAAACTGTGGGAGATGATGAAAGTGTTCCTACAGGTTATCACAGTA AAACAGAAGGAGCAGAAAGAACCAATGATGATAGCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGGAACGGGCCATTT GTGAGTACAATGAAAACCCAAAAGGATACATGCTTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAACAGTGAAACAACACCAA GCAAAGACATGAAAAAAACAAAGAAGATTTTTCTGTTCAAAAGAGTCCCCTCAATAAATCAAAAGATTGTCAAGAATAACAATGAGCCGC TCCCAGAGATAAAATCCATAGGAGACCAGATCATTTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGAGTCAGAATCATCAGA ATATCCCACCAACAAATACAGAGAGAAGATCAAAATCCTGTACAATACTATAAATATATATTTATGTTTTCACAGTCACCAAGTGTATTG TAATGTATACTTGAAAAATGTTATAACTTATGAAGTAAAGTTTCTGATAGTAGTCTTTAAAAGATATAAGACTTAATATGTTTTATTCAG CTTCTATAAGTGTGACCAGTTTTGATATTTATTTATGCTAATATTTTTAACAAGTCATTTCAAAATATGTGTATCTCAAATTCTCCCTAA AGTGTTGTGGCCTTAACTGTTCAGTATTGCAATAAAAAATATATTTTTATATGTGGAAAATTGAAATAAGATATTTCCTAGTTTTTACTA AACAATTTTACTTCTTTATAATTTTATAAGGCAATATTTGCAATCTTACGACACTGTAACAGTTTTTGATGTATTTACAATTTTTACAAA >12478_12478_1_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000313070_RPGR_chrX_38150737_ENST00000318842_length(amino acids)=1166AA_BP=822 MLDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIRLQLYVF VVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIVADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKN IEKRVRSLPEIDGLSKETVLSSWIAKYDAIYRGEEDLCKQPNRMALSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQA AQIRRELDGRLQLADKMAKERKFPKFIAKDMENMYIEELRSSVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLDIGDENEIQLSKSD VVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWGTQGDFTTTHPRPVVKVKLFTESTGVLALEDKELGRVILYP TSNSSKSAELHRMVVPKNSQDSDLKIKLAVRMDKPAHMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEG YTVDYTDPHPGLQGGCMFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAIQTQKLNPKGGTLHADAQLYADRFQKHGMDEF ISANPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLAELMEHSENGAVIDPTLLHYSFAFCAS HVHGNRPDGIGTVSVEEKERFEEIKERLSSLLENQISHFRYCFPFGRPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEKAALI NYTRLTEYAKIEDYLLDEMTKEAEIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYEE MSEMKEGKACKQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEDHEF SKTEELKLEDVDEEINAENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENPKGYMLDDADSSSLE -------------------------------------------------------------- >12478_12478_2_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000334010_RPGR_chrX_38150737_ENST00000318842_length(transcript)=4398nt_BP=2901nt ATTCAATTCCACGTGTTGCTTGTTGTAGGCGCCACAGGTTCCCCACCTGCGTCCGGGCGCTCGGGCGGCTCCGCCTCTGCCGGCGGGCTC TGGGGAACCGCTGGGTCGGCGCGCCCGGGGCTGGCGGAGCAATTCCTGAGGCGCCCAAGCTCACCCCCAACGCTAACTCCGCCTATTCAG TCCCGGCGGCTCCCCCTCTCCCCCCTCCCAATCCTCCTCCCGGCTCCTGCCCGCCCCTTTCGCCCTGGTGGTAGGAAACACTCCTGAATC TAACTCGACGTGTCCGGAAAGCCCTGGCCAGTTTTCCTTTCGTTCTGCGGCCGCTGCAGCCAGCCCCGCGGCTCCCTCAGACCCGCGGGC GCAGCCGCCGGGGGTGAGGCGCTTGGGGACCGCGGGCCGAGCGGCGGGGATCCCCGAGCACCATGCTGGACCCGTCTTCCAGCGAAGAGG AGTCGGACGAGGGGCTGGAAGAGGAAAGCCGCGATGTGCTGGTGGCAGCCGGCAGCTCGCAGCGAGCTCCTCCAGCCCCGACTCGGGAAG GGCGGCGGGACGCGCCGGGGCGCGCGGGCGGCGGCGGCGCGGCCAGATCTGTGAGCCCGAGCCCCTCTGTGCTCAGCGAGGGGCGAGACG AGCCCCAGCGGCAGCTGGACGATGAGCAGGAGCGGAGGATCCGCCTGCAGCTCTACGTCTTCGTCGTGAGGTGCATCGCGTACCCCTTCA ACGCCAAGCAGCCCACCGACATGGCCCGGAGGCAGCAGAAGCTTAACAAACAACAGTTGCAGTTACTGAAAGAACGGTTCCAGGCCTTCC TCAATGGGGAAACCCAAATTGTAGCTGACGAAGCATTTTGCAACGCAGTTCGGAGTTATTATGAGGTTTTTCTAAAGAGTGACCGAGTGG CCAGAATGGTACAGAGTGGAGGGTGTTCTGCTAATGACTTCAGAGAAGTATTTAAGAAAAACATAGAAAAACGTGTGCGGAGTTTGCCAG AAATAGATGGCTTGAGCAAAGAGACAGTGTTGAGCTCATGGATAGCCAAATATGATGCCATTTACAGAGGTGAAGAGGACTTGTGCAAAC AGCCAAATAGAATGGCCCTAAGTGCAGTGTCTGAACTTATTCTGAGCAAGGAACAACTCTATGAAATGTTTCAGCAGATTCTGGGTATTA AAAAACTGGAACACCAGCTCCTTTATAATGCATGTCAGCTGGATAACGCAGATGAACAAGCAGCCCAGATCAGAAGGGAACTTGATGGCC GGCTGCAATTGGCAGATAAAATGGCAAAGGAAAGAAAATTCCCCAAATTTATAGCAAAAGATATGGAGAATATGTATATAGAAGAGTTGC GGTCTTCAGTGAATTTGCTAATGGCCAATTTGGAAAGTCTTCCAGTTTCGAAAGGTGGTCCGGAATTTAAATTACAAAAATTAAAACGTT CACAGAACTCTGCATTTTTGGACATAGGAGATGAGAATGAGATTCAGCTGTCAAAGTCCGACGTGGTACTGTCATTCACCTTAGAGATTG TCATAATGGAAGTGCAAGGCCTGAAGTCAGTTGCTCCCAATCGAATTGTTTACTGTACAATGGAAGTGGAAGGAGAAAAACTTCAGACAG ACCAGGCCGAAGCCTCAAGGCCACAATGGGGGACTCAAGGAGATTTCACCACCACCCATCCTCGGCCTGTGGTCAAAGTGAAACTCTTCA CAGAAAGCACTGGAGTTCTGGCCCTGGAAGATAAAGAACTGGGAAGGGTGATATTATACCCAACTTCTAATAGCTCCAAATCAGCTGAAT TACACCGAATGGTAGTTCCAAAAAATAGCCAGGATTCTGACTTAAAAATCAAACTGGCAGTGCGAATGGATAAACCAGCACATATGAAGC ATAGTGGATATCTGTATGCCCTTGGACAGAAGGTTTGGAAAAGATGGAAAAAACGTTACTTTGTTCTAGTTCAGGTTAGCCAATATACCT TTGCTATGTGCAGTTATAGAGAAAAGAAGTCTGAACCACAAGAATTAATGCAGCTTGAAGGCTATACTGTGGATTATACCGATCCCCACC CAGGCCTTCAGGGTGGTTGTATGTTCTTTAATGCTGTTAAAGAAGGAGATACTGTAATCTTTGCCAGTGATGATGAACAGGACAGAATAT TATGGGTTCAAGCCATGTATAGGGCCACAGGTCAATCATATAAACCAGTTCCTGCAATTCAAACCCAGAAACTGAATCCTAAAGGAGGAA CTCTCCATGCAGATGCTCAGCTTTCTGAATTTACAGATGCAGATCGTTTTCAGAAACATGGTATGGATGAGTTTATTTCTGCAAACCCCT GCAAGCTTGATCATGCCTTCCTTTTTAGAATACTCCAGAGGCAGACTTTGGATCACAGACTGAATGATTCCTATTCTTGCTTGGGATGGT TTAGCCCTGGCCAAGTCTTTGTGTTAGATGAGTACTGTGCCCGTTATGGTGTGAGAGGCTGTCACAGACATCTCTGCTACCTTGCAGAAC TGATGGAACATTCAGAAAATGGTGCTGTCATTGACCCTACCCTGCTCCATTACAGCTTTGCATTCTGTGCCTCTCATGTGCACGGCAACA GGCCTGATGGAATTGGGACTGTTTCAGTGGAAGAAAAAGAAAGATTTGAGGAGATAAAAGAGAGACTCTCTTCCCTTTTAGAAAATCAGA TAAGCCATTTCAGATACTGTTTTCCCTTTGGACGACCTGAAGGTGCTCTAAAAGCTACACTTTCATTACTTGAAAGGGTTTTAATGAAAG ATATTGCCACTCCCATACCAGCAGAAGAGGTGAAGAAAGTGGTCAGAAAATGTCTCGAGAAAGCTGCCTTGATCAATTACACTAGACTCA CAGAATATGCCAAAATAGAAGATTATTTGCTAGATGAAATGACCAAAGAAGCAGAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAG AAACTACTGATATCTTAAACATGACACACATCATGAGCCTGAATTCCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGA AACAACAAACAATTGGGGAACTGACGCAGGATACAGCTCTTACTGAAAACGATGATAGTGATGAATATGAAGAAATGTCAGAAATGAAAG AAGGGAAAGCATGTAAACAACATGTGTCACAAGGGATTTTCATGACGCAGCCAGCTACGACTATCGAAGCATTTTCAGATGAGGAAGTAG AGATCCCAGAGGAGAAGGAAGGAGCAGAGGATTCAAAAGGAAATGGAATAGAGGAGCAAGAGGTAGAAGCAAATGAGGAAAATGTGAAGG TGCATGGAGGAAGAAAGGAGAAAACAGAGATCCTATCAGATGACCTTACAGACAAAGCAGAGGATCATGAATTTTCTAAAACTGAGGAAC TAAAACTAGAAGATGTGGATGAGGAAATTAATGCTGAAAATGTGGAAAGCAAGAAGAAAACTGTGGGAGATGATGAAAGTGTTCCTACAG GTTATCACAGTAAAACAGAAGGAGCAGAAAGAACCAATGATGATAGCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGG AACGGGCCATTTGTGAGTACAATGAAAACCCAAAAGGATACATGCTTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAACAGTG AAACAACACCAAGCAAAGACATGAAAAAAACAAAGAAGATTTTTCTGTTCAAAAGAGTCCCCTCAATAAATCAAAAGATTGTCAAGAATA ACAATGAGCCGCTCCCAGAGATAAAATCCATAGGAGACCAGATCATTTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGAGTC AGAATCATCAGAATATCCCACCAACAAATACAGAGAGAAGATCAAAATCCTGTACAATACTATAAATATATATTTATGTTTTCACAGTCA CCAAGTGTATTGTAATGTATACTTGAAAAATGTTATAACTTATGAAGTAAAGTTTCTGATAGTAGTCTTTAAAAGATATAAGACTTAATA TGTTTTATTCAGCTTCTATAAGTGTGACCAGTTTTGATATTTATTTATGCTAATATTTTTAACAAGTCATTTCAAAATATGTGTATCTCA AATTCTCCCTAAAGTGTTGTGGCCTTAACTGTTCAGTATTGCAATAAAAAATATATTTTTATATGTGGAAAATTGAAATAAGATATTTCC TAGTTTTTACTAAACAATTTTACTTCTTTATAATTTTATAAGGCAATATTTGCAATCTTACGACACTGTAACAGTTTTTGATGTATTTAC >12478_12478_2_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000334010_RPGR_chrX_38150737_ENST00000318842_length(amino acids)=1170AA_BP=826 MLDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIRLQLYVF VVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIVADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKN IEKRVRSLPEIDGLSKETVLSSWIAKYDAIYRGEEDLCKQPNRMALSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQA AQIRRELDGRLQLADKMAKERKFPKFIAKDMENMYIEELRSSVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLDIGDENEIQLSKSD VVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWGTQGDFTTTHPRPVVKVKLFTESTGVLALEDKELGRVILYP TSNSSKSAELHRMVVPKNSQDSDLKIKLAVRMDKPAHMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEG YTVDYTDPHPGLQGGCMFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAIQTQKLNPKGGTLHADAQLSEFTDADRFQKHG MDEFISANPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLAELMEHSENGAVIDPTLLHYSFA FCASHVHGNRPDGIGTVSVEEKERFEEIKERLSSLLENQISHFRYCFPFGRPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEK AALINYTRLTEYAKIEDYLLDEMTKEAEIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSD EYEEMSEMKEGKACKQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAE DHEFSKTEELKLEDVDEEINAENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENPKGYMLDDADS SSLEILENSETTPSKDMKKTKKIFLFKRVPSINQKIVKNNNEPLPEIKSIGDQIILKSDNKDADQNHMSQNHQNIPPTNTERRSKSCTIL -------------------------------------------------------------- >12478_12478_3_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000412584_RPGR_chrX_38150737_ENST00000318842_length(transcript)=4085nt_BP=2588nt TTTTCCTTTCGTTCTGCGGCCGCTGCAGCCAGCCCCGCGGCTCCCTCAGACCCGCGGGCGCAGCCGCCGGGGGTGAGGCGCTTGGGGACC GCGGGCCGAGCGGCGGGGATCCCCGAGCACCATGCTGGACCCGTCTTCCAGCGAAGAGGAGTCGGACGAGGGGCTGGAAGAGGAAAGCCG CGATGTGCTGGTGGCAGCCGGCAGCTCGCAGCGAGCTCCTCCAGCCCCGACTCGGGAAGGGCGGCGGGACGCGCCGGGGCGCGCGGGCGG CGGCGGCGCGGCCAGATCTGTGAGCCCGAGCCCCTCTGTGCTCAGCGAGGGGCGAGACGAGCCCCAGCGGCAGCTGGACGATGAGCAGGA GCGGAGGATCCGCCTGCAGCTCTACGTCTTCGTCGTGAGGTGCATCGCGTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCCCGGAG GCAGCAGAAGCTTAACAAACAACAGTTGCAGTTACTGAAAGAACGGTTCCAGGCCTTCCTCAATGGGGAAACCCAAATTGTAGCTGACGA AGCATTTTGCAACGCAGTTCGGAGTTATTATGAGGTTTTTCTAAAGAGTGACCGAGTGGCCAGAATGGTACAGAGTGGAGGGTGTTCTGC TAATGACTTCAGAGAAGTATTTAAGAAAAACATAGAAAAACGTGTGCGGAGTTTGCCAGAAATAGATGGCTTGAGCAAAGAGACAGTGTT GAGCTCATGGATAGCCAAATATGATGCCATTTACAGAGGTGAAGAGGACTTGTGCAAACAGCCAAATAGAATGGCCCTAAGTGCAGTGTC TGAACTTATTCTGAGCAAGGAACAACTCTATGAAATGTTTCAGCAGATTCTGGGTATTAAAAAACTGGAACACCAGCTCCTTTATAATGC ATGTCAGCTGGATAACGCAGATGAACAAGCAGCCCAGATCAGAAGGGAACTTGATGGCCGGCTGCAATTGGCAGATAAAATGGCAAAGGA AAGAAAATTCCCCAAATTTATAGCAAAAGATATGGAGAATATGTATATAGAAGAGTTGCGGTCTTCAGTGAATTTGCTAATGGCCAATTT GGAAAGTCTTCCAGTTTCGAAAGGTGGTCCGGAATTTAAATTACAAAAATTAAAACGTTCACAGAACTCTGCATTTTTGGACATAGGAGA TGAGAATGAGATTCAGCTGTCAAAGTCCGACGTGGTACTGTCATTCACCTTAGAGATTGTCATAATGGAAGTGCAAGGCCTGAAGTCAGT TGCTCCCAATCGAATTGTTTACTGTACAATGGAAGTGGAAGGAGAAAAACTTCAGACAGACCAGGCCGAAGCCTCAAGGCCACAATGGGG GACTCAAGGAGATTTCACCACCACCCATCCTCGGCCTGTGGTCAAAGTGAAACTCTTCACAGAAAGCACTGGAGTTCTGGCCCTGGAAGA TAAAGAACTGGGAAGGGTGATATTATACCCAACTTCTAATAGCTCCAAATCAGCTGAATTACACCGAATGGTAGTTCCAAAAAATAGCCA GGATTCTGACTTAAAAATCAAACTGGCAGTGCGAATGGATAAACCAGCACATATGAAGCATAGTGGATATCTGTATGCCCTTGGACAGAA GGTTTGGAAAAGATGGAAAAAACGTTACTTTGTTCTAGTTCAGGTTAGCCAATATACCTTTGCTATGTGCAGTTATAGAGAAAAGAAGTC TGAACCACAAGAATTAATGCAGCTTGAAGGCTATACTGTGGATTATACCGATCCCCACCCAGGCCTTCAGGGTGGTTGTATGTTCTTTAA TGCTGTTAAAGAAGGAGATACTGTAATCTTTGCCAGTGATGATGAACAGGACAGAATATTATGGGTTCAAGCCATGTATAGGGCCACAGG TCAATCATATAAACCAGTTCCTGCAATTCAAACCCAGAAACTGAATCCTAAAGGAGGAACTCTCCATGCAGATGCTCAGCTTTATGCAGA TCGTTTTCAGAAACATGGTATGGATGAGTTTATTTCTGCAAACCCCTGCAAGCTTGATCATGCCTTCCTTTTTAGAATACTCCAGAGGCA GACTTTGGATCACAGACTGAATGATTCCTATTCTTGCTTGGGATGGTTTAGCCCTGGCCAAGTCTTTGTGTTAGATGAGTACTGTGCCCG TTATGGTGTGAGAGGCTGTCACAGACATCTCTGCTACCTTGCAGAACTGATGGAACATTCAGAAAATGGTGCTGTCATTGACCCTACCCT GCTCCATTACAGCTTTGCATTCTGTGCCTCTCATGTGCACGGCAACAGGCCTGATGGAATTGGGACTGTTTCAGTGGAAGAAAAAGAAAG ATTTGAGGAGATAAAAGAGAGACTCTCTTCCCTTTTAGAAAATCAGATAAGCCATTTCAGATACTGTTTTCCCTTTGGACGACCTGAAGG TGCTCTAAAAGCTACACTTTCATTACTTGAAAGGGTTTTAATGAAAGATATTGCCACTCCCATACCAGCAGAAGAGGTGAAGAAAGTGGT CAGAAAATGTCTCGAGAAAGCTGCCTTGATCAATTACACTAGACTCACAGAATATGCCAAAATAGAAGATTATTTGCTAGATGAAATGAC CAAAGAAGCAGAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAGAAACTACTGATATCTTAAACATGACACACATCATGAGCCTGAA TTCCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGAAACAACAAACAATTGGGGAACTGACGCAGGATACAGCTCTTAC TGAAAACGATGATAGTGATGAATATGAAGAAATGTCAGAAATGAAAGAAGGGAAAGCATGTAAACAACATGTGTCACAAGGGATTTTCAT GACGCAGCCAGCTACGACTATCGAAGCATTTTCAGATGAGGAAGTAGAGATCCCAGAGGAGAAGGAAGGAGCAGAGGATTCAAAAGGAAA TGGAATAGAGGAGCAAGAGGTAGAAGCAAATGAGGAAAATGTGAAGGTGCATGGAGGAAGAAAGGAGAAAACAGAGATCCTATCAGATGA CCTTACAGACAAAGCAGAGGATCATGAATTTTCTAAAACTGAGGAACTAAAACTAGAAGATGTGGATGAGGAAATTAATGCTGAAAATGT GGAAAGCAAGAAGAAAACTGTGGGAGATGATGAAAGTGTTCCTACAGGTTATCACAGTAAAACAGAAGGAGCAGAAAGAACCAATGATGA TAGCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGGAACGGGCCATTTGTGAGTACAATGAAAACCCAAAAGGATACAT GCTTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAACAGTGAAACAACACCAAGCAAAGACATGAAAAAAACAAAGAAGATTTT TCTGTTCAAAAGAGTCCCCTCAATAAATCAAAAGATTGTCAAGAATAACAATGAGCCGCTCCCAGAGATAAAATCCATAGGAGACCAGAT CATTTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGAGTCAGAATCATCAGAATATCCCACCAACAAATACAGAGAGAAGATC AAAATCCTGTACAATACTATAAATATATATTTATGTTTTCACAGTCACCAAGTGTATTGTAATGTATACTTGAAAAATGTTATAACTTAT GAAGTAAAGTTTCTGATAGTAGTCTTTAAAAGATATAAGACTTAATATGTTTTATTCAGCTTCTATAAGTGTGACCAGTTTTGATATTTA TTTATGCTAATATTTTTAACAAGTCATTTCAAAATATGTGTATCTCAAATTCTCCCTAAAGTGTTGTGGCCTTAACTGTTCAGTATTGCA ATAAAAAATATATTTTTATATGTGGAAAATTGAAATAAGATATTTCCTAGTTTTTACTAAACAATTTTACTTCTTTATAATTTTATAAGG CAATATTTGCAATCTTACGACACTGTAACAGTTTTTGATGTATTTACAATTTTTACAAAACTGAGGTAAAATTGTTTATAATGAACATAT >12478_12478_3_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000412584_RPGR_chrX_38150737_ENST00000318842_length(amino acids)=1166AA_BP=822 MLDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIRLQLYVF VVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIVADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKN IEKRVRSLPEIDGLSKETVLSSWIAKYDAIYRGEEDLCKQPNRMALSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQA AQIRRELDGRLQLADKMAKERKFPKFIAKDMENMYIEELRSSVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLDIGDENEIQLSKSD VVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWGTQGDFTTTHPRPVVKVKLFTESTGVLALEDKELGRVILYP TSNSSKSAELHRMVVPKNSQDSDLKIKLAVRMDKPAHMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEG YTVDYTDPHPGLQGGCMFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAIQTQKLNPKGGTLHADAQLYADRFQKHGMDEF ISANPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLAELMEHSENGAVIDPTLLHYSFAFCAS HVHGNRPDGIGTVSVEEKERFEEIKERLSSLLENQISHFRYCFPFGRPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEKAALI NYTRLTEYAKIEDYLLDEMTKEAEIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDEYEE MSEMKEGKACKQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEDHEF SKTEELKLEDVDEEINAENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENPKGYMLDDADSSSLE -------------------------------------------------------------- >12478_12478_4_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000449022_RPGR_chrX_38150737_ENST00000318842_length(transcript)=3993nt_BP=2496nt GGCGGGGATCCCCGAGCACCATGCTGGACCCGTCTTCCAGCGAAGAGGAGTCGGACGAGGGGCTGGAAGAGGAAAGCCGCGATGTGCTGG TGGCAGCCGGCAGCTCGCAGCGAGCTCCTCCAGCCCCGACTCGGGAAGGGCGGCGGGACGCGCCGGGGCGCGCGGGCGGCGGCGGCGCGG CCAGATCTGTGAGCCCGAGCCCCTCTGTGCTCAGCGAGGGGCGAGACGAGCCCCAGCGGCAGCTGGACGATGAGCAGGAGCGGAGGATCC GCCTGCAGCTCTACGTCTTCGTCGTGAGGTGCATCGCGTACCCCTTCAACGCCAAGCAGCCCACCGACATGGCCCGGAGGCAGCAGAAGC TTAACAAACAACAGTTGCAGTTACTGAAAGAACGGTTCCAGGCCTTCCTCAATGGGGAAACCCAAATTGTAGCTGACGAAGCATTTTGCA ACGCAGTTCGGAGTTATTATGAGGTTTTTCTAAAGAGTGACCGAGTGGCCAGAATGGTACAGAGTGGAGGGTGTTCTGCTAATGACTTCA GAGAAGTATTTAAGAAAAACATAGAAAAACGTGTGCGGAGTTTGCCAGAAATAGATGGCTTGAGCAAAGAGACAGTGTTGAGCTCATGGA TAGCCAAATATGATGCCATTTACAGAGGTGAAGAGGACTTGTGCAAACAGCCAAATAGAATGGCCCTAAGTGCAGTGTCTGAACTTATTC TGAGCAAGGAACAACTCTATGAAATGTTTCAGCAGATTCTGGGTATTAAAAAACTGGAACACCAGCTCCTTTATAATGCATGTCAGCTGG ATAACGCAGATGAACAAGCAGCCCAGATCAGAAGGGAACTTGATGGCCGGCTGCAATTGGCAGATAAAATGGCAAAGGAAAGAAAATTCC CCAAATTTATAGCAAAAGATATGGAGAATATGTATATAGAAGAGTTGCGGTCTTCAGTGAATTTGCTAATGGCCAATTTGGAAAGTCTTC CAGTTTCGAAAGGTGGTCCGGAATTTAAATTACAAAAATTAAAACGTTCACAGAACTCTGCATTTTTGGACATAGGAGATGAGAATGAGA TTCAGCTGTCAAAGTCCGACGTGGTACTGTCATTCACCTTAGAGATTGTCATAATGGAAGTGCAAGGCCTGAAGTCAGTTGCTCCCAATC GAATTGTTTACTGTACAATGGAAGTGGAAGGAGAAAAACTTCAGACAGACCAGGCCGAAGCCTCAAGGCCACAATGGGGGACTCAAGGAG ATTTCACCACCACCCATCCTCGGCCTGTGGTCAAAGTGAAACTCTTCACAGAAAGCACTGGAGTTCTGGCCCTGGAAGATAAAGAACTGG GAAGGGTGATATTATACCCAACTTCTAATAGCTCCAAATCAGCTGAATTACACCGAATGGTAGTTCCAAAAAATAGCCAGGATTCTGACT TAAAAATCAAACTGGCAGTGCGAATGGATAAACCAGCACATATGAAGCATAGTGGATATCTGTATGCCCTTGGACAGAAGGTTTGGAAAA GATGGAAAAAACGTTACTTTGTTCTAGTTCAGGTTAGCCAATATACCTTTGCTATGTGCAGTTATAGAGAAAAGAAGTCTGAACCACAAG AATTAATGCAGCTTGAAGGCTATACTGTGGATTATACCGATCCCCACCCAGGCCTTCAGGGTGGTTGTATGTTCTTTAATGCTGTTAAAG AAGGAGATACTGTAATCTTTGCCAGTGATGATGAACAGGACAGAATATTATGGGTTCAAGCCATGTATAGGGCCACAGGTCAATCATATA AACCAGTTCCTGCAATTCAAACCCAGAAACTGAATCCTAAAGGAGGAACTCTCCATGCAGATGCTCAGCTTTCTGGTAAAGATGCAGATC GTTTTCAGAAACATGGTATGGATGAGTTTATTTCTGCAAACCCCTGCAAGCTTGATCATGCCTTCCTTTTTAGAATACTCCAGAGGCAGA CTTTGGATCACAGACTGAATGATTCCTATTCTTGCTTGGGATGGTTTAGCCCTGGCCAAGTCTTTGTGTTAGATGAGTACTGTGCCCGTT ATGGTGTGAGAGGCTGTCACAGACATCTCTGCTACCTTGCAGAACTGATGGAACATTCAGAAAATGGTGCTGTCATTGACCCTACCCTGC TCCATTACAGCTTTGCATTCTGTGCCTCTCATGTGCACGGCAACAGGCCTGATGGAATTGGGACTGTTTCAGTGGAAGAAAAAGAAAGAT TTGAGGAGATAAAAGAGAGACTCTCTTCCCTTTTAGAAAATCAGATAAGCCATTTCAGATACTGTTTTCCCTTTGGACGACCTGAAGGTG CTCTAAAAGCTACACTTTCATTACTTGAAAGGGTTTTAATGAAAGATATTGCCACTCCCATACCAGCAGAAGAGGTGAAGAAAGTGGTCA GAAAATGTCTCGAGAAAGCTGCCTTGATCAATTACACTAGACTCACAGAATATGCCAAAATAGAAGATTATTTGCTAGATGAAATGACCA AAGAAGCAGAGATAGATAATTCTTCAACTGTAGAAAGCCTTGGAGAAACTACTGATATCTTAAACATGACACACATCATGAGCCTGAATT CCAATGAAAAGTCATTAAAATTATCACCAGTTCAGAAACAAAAGAAACAACAAACAATTGGGGAACTGACGCAGGATACAGCTCTTACTG AAAACGATGATAGTGATGAATATGAAGAAATGTCAGAAATGAAAGAAGGGAAAGCATGTAAACAACATGTGTCACAAGGGATTTTCATGA CGCAGCCAGCTACGACTATCGAAGCATTTTCAGATGAGGAAGTAGAGATCCCAGAGGAGAAGGAAGGAGCAGAGGATTCAAAAGGAAATG GAATAGAGGAGCAAGAGGTAGAAGCAAATGAGGAAAATGTGAAGGTGCATGGAGGAAGAAAGGAGAAAACAGAGATCCTATCAGATGACC TTACAGACAAAGCAGAGGATCATGAATTTTCTAAAACTGAGGAACTAAAACTAGAAGATGTGGATGAGGAAATTAATGCTGAAAATGTGG AAAGCAAGAAGAAAACTGTGGGAGATGATGAAAGTGTTCCTACAGGTTATCACAGTAAAACAGAAGGAGCAGAAAGAACCAATGATGATA GCTCAGCTGAAACTATTGAAAAGAAAGAAAAAGCCAACCTAGAGGAACGGGCCATTTGTGAGTACAATGAAAACCCAAAAGGATACATGC TTGATGATGCAGATAGCAGTTCATTAGAAATCCTAGAAAACAGTGAAACAACACCAAGCAAAGACATGAAAAAAACAAAGAAGATTTTTC TGTTCAAAAGAGTCCCCTCAATAAATCAAAAGATTGTCAAGAATAACAATGAGCCGCTCCCAGAGATAAAATCCATAGGAGACCAGATCA TTTTAAAAAGTGATAATAAAGATGCCGACCAGAACCACATGAGTCAGAATCATCAGAATATCCCACCAACAAATACAGAGAGAAGATCAA AATCCTGTACAATACTATAAATATATATTTATGTTTTCACAGTCACCAAGTGTATTGTAATGTATACTTGAAAAATGTTATAACTTATGA AGTAAAGTTTCTGATAGTAGTCTTTAAAAGATATAAGACTTAATATGTTTTATTCAGCTTCTATAAGTGTGACCAGTTTTGATATTTATT TATGCTAATATTTTTAACAAGTCATTTCAAAATATGTGTATCTCAAATTCTCCCTAAAGTGTTGTGGCCTTAACTGTTCAGTATTGCAAT AAAAAATATATTTTTATATGTGGAAAATTGAAATAAGATATTTCCTAGTTTTTACTAAACAATTTTACTTCTTTATAATTTTATAAGGCA ATATTTGCAATCTTACGACACTGTAACAGTTTTTGATGTATTTACAATTTTTACAAAACTGAGGTAAAATTGTTTATAATGAACATATTT >12478_12478_4_CADPS2-RPGR_CADPS2_chr7_122078395_ENST00000449022_RPGR_chrX_38150737_ENST00000318842_length(amino acids)=1169AA_BP=825 MLDPSSSEEESDEGLEEESRDVLVAAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIRLQLYVF VVRCIAYPFNAKQPTDMARRQQKLNKQQLQLLKERFQAFLNGETQIVADEAFCNAVRSYYEVFLKSDRVARMVQSGGCSANDFREVFKKN IEKRVRSLPEIDGLSKETVLSSWIAKYDAIYRGEEDLCKQPNRMALSAVSELILSKEQLYEMFQQILGIKKLEHQLLYNACQLDNADEQA AQIRRELDGRLQLADKMAKERKFPKFIAKDMENMYIEELRSSVNLLMANLESLPVSKGGPEFKLQKLKRSQNSAFLDIGDENEIQLSKSD VVLSFTLEIVIMEVQGLKSVAPNRIVYCTMEVEGEKLQTDQAEASRPQWGTQGDFTTTHPRPVVKVKLFTESTGVLALEDKELGRVILYP TSNSSKSAELHRMVVPKNSQDSDLKIKLAVRMDKPAHMKHSGYLYALGQKVWKRWKKRYFVLVQVSQYTFAMCSYREKKSEPQELMQLEG YTVDYTDPHPGLQGGCMFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSYKPVPAIQTQKLNPKGGTLHADAQLSGKDADRFQKHGM DEFISANPCKLDHAFLFRILQRQTLDHRLNDSYSCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLAELMEHSENGAVIDPTLLHYSFAF CASHVHGNRPDGIGTVSVEEKERFEEIKERLSSLLENQISHFRYCFPFGRPEGALKATLSLLERVLMKDIATPIPAEEVKKVVRKCLEKA ALINYTRLTEYAKIEDYLLDEMTKEAEIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTENDDSDE YEEMSEMKEGKACKQHVSQGIFMTQPATTIEAFSDEEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAED HEFSKTEELKLEDVDEEINAENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETIEKKEKANLEERAICEYNENPKGYMLDDADSS -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for CADPS2-RPGR |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000412584 | - | 16 | 28 | 755_1074 | 822.3333333333334 | 1256.0 | DRD2 |
Hgene | CADPS2 | chr7:122078395 | chrX:38150737 | ENST00000449022 | - | 17 | 30 | 755_1074 | 825.3333333333334 | 1297.0 | DRD2 |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for CADPS2-RPGR |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for CADPS2-RPGR |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |