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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CAPZA2-ST7 (FusionGDB2 ID:12990)

Fusion Gene Summary for CAPZA2-ST7

check button Fusion gene summary
Fusion gene informationFusion gene name: CAPZA2-ST7
Fusion gene ID: 12990
HgeneTgene
Gene symbol

CAPZA2

ST7

Gene ID

830

93655

Gene namecapping actin protein of muscle Z-line subunit alpha 2ST7 overlapping transcript 3
SynonymsCAPPA2|CAPZNCRNA00026|ST7|ST7OT3
Cytomap

7q31.2

7q31.2

Type of geneprotein-codingncRNA
DescriptionF-actin-capping protein subunit alpha-2F-actin capping protein alpha-2 subunitcapZ alpha-2capping actin protein of muscle Z-line alpha subunit 2capping protein (actin filament) muscle Z-line, alpha 2epididymis secretory sperm binding proteinST7 overlapping transcript 3 (non-coding RNA)ST7 overlapping transcript 3 (non-protein coding)suppression of tumorigenicity 7
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000466023, ENST00000361183, 
ENST00000458284, ENST00000490693, 
ENST00000265437, ENST00000323984, 
ENST00000393446, ENST00000393449, 
ENST00000393451, ENST00000422922, 
ENST00000432298, ENST00000393443, 
ENST00000393444, ENST00000393447, 
ENST00000465133, ENST00000487459, 
Fusion gene scores* DoF score17 X 6 X 9=91813 X 10 X 8=1040
# samples 2014
** MAII scorelog2(20/918*10)=-2.19849415363908
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(14/1040*10)=-2.89308479608349
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CAPZA2 [Title/Abstract] AND ST7 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCAPZA2(116502704)-ST7(116739815), # samples:1
ST7(116593745)-CAPZA2(116556113), # samples:1
Anticipated loss of major functional domain due to fusion event.ST7-CAPZA2 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
ST7-CAPZA2 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
ST7-CAPZA2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
CAPZA2-ST7 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
CAPZA2-ST7 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
CAPZA2-ST7 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across CAPZA2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ST7 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-HU-A4GQCAPZA2chr7

116502704

+ST7chr7

116739815

+


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Fusion Gene ORF analysis for CAPZA2-ST7

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000466023ENST00000265437CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000323984CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000393446CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000393449CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000393451CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000422922CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3CDSENST00000466023ENST00000432298CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3UTRENST00000466023ENST00000393443CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3UTRENST00000466023ENST00000393444CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3UTRENST00000466023ENST00000393447CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3UTRENST00000466023ENST00000465133CAPZA2chr7

116502704

+ST7chr7

116739815

+
3UTR-3UTRENST00000466023ENST00000487459CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000361183ENST00000393443CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000361183ENST00000393444CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000361183ENST00000393447CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000361183ENST00000465133CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000361183ENST00000487459CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000458284ENST00000393443CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000458284ENST00000393444CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000458284ENST00000393447CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000458284ENST00000465133CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000458284ENST00000487459CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000490693ENST00000393443CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000490693ENST00000393444CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000490693ENST00000393447CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000490693ENST00000465133CAPZA2chr7

116502704

+ST7chr7

116739815

+
5CDS-3UTRENST00000490693ENST00000487459CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000265437CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000323984CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000393446CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000393449CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000393451CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000422922CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000361183ENST00000432298CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000265437CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000323984CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000393446CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000393449CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000393451CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000422922CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000458284ENST00000432298CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000265437CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000323984CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000393446CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000393449CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000393451CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000422922CAPZA2chr7

116502704

+ST7chr7

116739815

+
Frame-shiftENST00000490693ENST00000432298CAPZA2chr7

116502704

+ST7chr7

116739815

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CAPZA2-ST7


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CAPZA2chr7116502704+ST7chr7116739815+7.33E-070.9999993
CAPZA2chr7116502704+ST7chr7116739815+7.33E-070.9999993

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for CAPZA2-ST7


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:116502704/:116739815)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CAPZA2-ST7


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CAPZA2-ST7


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CAPZA2-ST7


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CAPZA2-ST7


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource