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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:CD3G-TRIM10 (FusionGDB2 ID:14499)

Fusion Gene Summary for CD3G-TRIM10

Fusion gene summary

Fusion gene information	Fusion gene name: CD3G-TRIM10
	Fusion gene ID: 14499
		Hgene	Tgene
	Gene symbol	CD3G	TRIM10
	Gene ID	445347	10107
	Gene name	TCR gamma alternate reading frame protein	tripartite motif containing 10
	Synonyms	CD3G\|TCRG\|TCRGC1\|TCRGC2\|TCRGV	HERF1\|RFB30\|RNF9
	Cytomap	7p14.1	6p22.1
	Type of gene	protein-coding	protein-coding
	Description	TCR gamma alternate reading frame proteinT cell receptor gamma chain variableT-cell receptor gamma-chain constant regionTCR V gamma 3J2C2TCR V3-JP2-Cgamma2TCR- gamma V-IVVgamma9ChainTCRMOPantigen, T-cell receptor	tripartite motif-containing protein 10B30-RING finger proteinZn-finger proteinhematopoietic RING finger 1ring finger protein 9tripartite motif protein 10
	Modification date	20200313	20200313
	UniProtAcc	P09693	.
	Ensembl transtripts involved in fusion gene	ENST00000392883, ENST00000532903, ENST00000532917,	ENST00000376704, ENST00000449742, ENST00000259941, ENST00000354038, ENST00000413055, ENST00000416714, ENST00000417411, ENST00000426996, ENST00000428611, ENST00000431258, ENST00000446013, ENST00000447465, ENST00000448645, ENST00000449208, ENST00000451727, ENST00000456988, ENST00000546716, ENST00000548533, ENST00000548891, ENST00000551474, ENST00000551591, ENST00000553004, ENST00000553167,
Fusion gene scores	* DoF score	3 X 3 X 2=18	1 X 1 X 1=1
	# samples	3	1
	** MAII score	log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0	log2(1/1*10)=3.32192809488736
Context	PubMed: CD3G [Title/Abstract] AND TRIM10 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	CD3G(118223867)-TRIM10(30119906), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner

Gene

GO ID

GO term

PubMed ID

Fusion gene breakpoints across CD3G (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across TRIM10 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	R93335	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+

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Fusion Gene ORF analysis for CD3G-TRIM10

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
3UTR-3UTR	ENST00000392883	ENST00000376704	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-3UTR	ENST00000392883	ENST00000449742	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-3UTR	ENST00000532903	ENST00000376704	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-3UTR	ENST00000532903	ENST00000449742	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-3UTR	ENST00000532917	ENST00000376704	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-3UTR	ENST00000532917	ENST00000449742	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000259941	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000354038	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000413055	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000416714	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000417411	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000426996	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000428611	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000431258	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000446013	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000447465	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000448645	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000449208	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000451727	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000456988	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000546716	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000548533	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000548891	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000551474	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000551591	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000553004	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000392883	ENST00000553167	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000259941	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000354038	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000413055	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000416714	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000417411	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000426996	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000428611	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000431258	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000446013	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000447465	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000448645	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000449208	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000451727	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000456988	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000546716	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000548533	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000548891	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000551474	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000551591	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000553004	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532903	ENST00000553167	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000259941	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000354038	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000413055	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000416714	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000417411	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000426996	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000428611	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000431258	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000446013	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000447465	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000448645	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000449208	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000451727	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000456988	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000546716	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000548533	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000548891	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000551474	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000551591	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000553004	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+
3UTR-intron	ENST00000532917	ENST00000553167	CD3G	chr11	118223867	-	TRIM10	chr6	30119906	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for CD3G-TRIM10

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CD3G-TRIM10

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:118223867/:30119906)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
CD3G P09693	.
FUNCTION: Part of the TCR-CD3 complex present on T-lymphocyte cell surface that plays an essential role in adaptive immune response. When antigen presenting cells (APCs) activate T-cell receptor (TCR), TCR-mediated signals are transmitted across the cell membrane by the CD3 chains CD3D, CD3E, CD3G and CD3Z. All CD3 chains contain immunoreceptor tyrosine-based activation motifs (ITAMs) in their cytoplasmic domain. Upon TCR engagement, these motifs become phosphorylated by Src family protein tyrosine kinases LCK and FYN, resulting in the activation of downstream signaling pathways (PubMed:2470098). In addition to this role of signal transduction in T-cell activation, CD3G plays an essential role in the dynamic regulation of TCR expression at the cell surface (PubMed:8187769). Indeed, constitutive TCR cycling is dependent on the di-leucine-based (diL) receptor-sorting motif present in CD3G. {ECO:0000269\|PubMed:2470098, ECO:0000269\|PubMed:8187769, ECO:0000269\|PubMed:8636209}.	FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

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Fusion Gene Sequence for CD3G-TRIM10

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CD3G-TRIM10

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs for CD3G-TRIM10

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for CD3G-TRIM10

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source