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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CD44-EXT2 (FusionGDB2 ID:14513)

Fusion Gene Summary for CD44-EXT2

check button Fusion gene summary
Fusion gene informationFusion gene name: CD44-EXT2
Fusion gene ID: 14513
HgeneTgene
Gene symbol

CD44

EXT2

Gene ID

960

2132

Gene nameCD44 molecule (Indian blood group)exostosin glycosyltransferase 2
SynonymsCDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1SOTV|SSMS
Cytomap

11p13

11p11.2

Type of geneprotein-codingprotein-coding
DescriptionCD44 antigenGP90 lymphocyte homing/adhesion receptorHermes antigenIndian blood group antigencell surface glycoprotein CD44chondroitin sulfate proteoglycan 8epicanextracellular matrix receptor IIIhematopoietic cell E- and L-selectin ligandheparan exostosin-2N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferaseglucuronosyl-N-acetylglucosaminyl-proteoglycan/N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferasemultiple exostoses protein 2multiple exostosis 2putativ
Modification date2020032920200313
UniProtAcc

P16070

Q93063

Ensembl transtripts involved in fusion geneENST00000263398, ENST00000278386, 
ENST00000352818, ENST00000360158, 
ENST00000415148, ENST00000428726, 
ENST00000433354, ENST00000433892, 
ENST00000434472, ENST00000437706, 
ENST00000449691, ENST00000526025, 
ENST00000526669, ENST00000528922, 
ENST00000529186, ENST00000343631, 
ENST00000533608, ENST00000358681, 
ENST00000395673, 
Fusion gene scores* DoF score24 X 25 X 12=72008 X 8 X 4=256
# samples 368
** MAII scorelog2(36/7200*10)=-4.32192809488736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/256*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CD44 [Title/Abstract] AND EXT2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCD44(35160917)-EXT2(44265699), # samples:3
Anticipated loss of major functional domain due to fusion event.CD44-EXT2 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
CD44-EXT2 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
CD44-EXT2 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
CD44-EXT2 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
CD44-EXT2 seems lost the major protein functional domain in Tgene partner, which is a tumor suppressor due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCD44

GO:0007155

cell adhesion

19703720

HgeneCD44

GO:0016477

cell migration

22726066

HgeneCD44

GO:0030214

hyaluronan catabolic process

17170110

HgeneCD44

GO:0033138

positive regulation of peptidyl-serine phosphorylation

17045821

HgeneCD44

GO:0042110

T cell activation

7528188

HgeneCD44

GO:0043518

negative regulation of DNA damage response, signal transduction by p53 class mediator

17045821

HgeneCD44

GO:0044344

cellular response to fibroblast growth factor stimulus

19577615

HgeneCD44

GO:0050731

positive regulation of peptidyl-tyrosine phosphorylation

17045821

HgeneCD44

GO:0070374

positive regulation of ERK1 and ERK2 cascade

17045821

HgeneCD44

GO:1902166

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator

17045821

TgeneEXT2

GO:0006024

glycosaminoglycan biosynthetic process

12907669

TgeneEXT2

GO:0033692

cellular polysaccharide biosynthetic process

12907669


check buttonFusion gene breakpoints across CD44 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across EXT2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-X6-A8C6-01ACD44chr11

35160917

-EXT2chr11

44265699

+
ChimerDB4SARCTCGA-X6-A8C6-01ACD44chr11

35160917

+EXT2chr11

44265699

+


Top

Fusion Gene ORF analysis for CD44-EXT2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000263398ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000278386ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000352818ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000360158ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000415148ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000428726ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000433354ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000433892ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000434472ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000437706ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000449691ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000526025ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
5CDS-intronENST00000526669ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000263398ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000263398ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000278386ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000278386ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000352818ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000352818ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000360158ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000360158ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000415148ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000415148ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000428726ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000428726ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000433354ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000433354ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000433892ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000433892ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000434472ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000434472ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000437706ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000437706ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000449691ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000449691ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000526025ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000526025ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000526669ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
Frame-shiftENST00000526669ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000263398ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000263398ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000278386ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000278386ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000352818ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000352818ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000360158ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000360158ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000415148ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000415148ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000428726ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000428726ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000433354ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000433354ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000433892ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000433892ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000434472ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000434472ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000437706ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000437706ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000449691ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000449691ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000526025ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000526025ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000526669ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
In-frameENST00000526669ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
intron-3CDSENST00000528922ENST00000343631CD44chr11

35160917

+EXT2chr11

44265699

+
intron-3CDSENST00000528922ENST00000358681CD44chr11

35160917

+EXT2chr11

44265699

+
intron-3CDSENST00000528922ENST00000395673CD44chr11

35160917

+EXT2chr11

44265699

+
intron-3CDSENST00000528922ENST00000533608CD44chr11

35160917

+EXT2chr11

44265699

+
intron-intronENST00000528922ENST00000529186CD44chr11

35160917

+EXT2chr11

44265699

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000263398CD44chr1135160917+ENST00000358681EXT2chr1144265699+128450121485154
ENST00000263398CD44chr1135160917+ENST00000395673EXT2chr1144265699+178250121485154
ENST00000526025CD44chr1135160917+ENST00000358681EXT2chr1144265699+12724899473154
ENST00000526025CD44chr1135160917+ENST00000395673EXT2chr1144265699+17704899473154
ENST00000449691CD44chr1135160917+ENST00000358681EXT2chr1144265699+9842013800127
ENST00000449691CD44chr1135160917+ENST00000395673EXT2chr1144265699+14822013800127
ENST00000360158CD44chr1135160917+ENST00000358681EXT2chr1144265699+9842013800127
ENST00000360158CD44chr1135160917+ENST00000395673EXT2chr1144265699+14822013800127
ENST00000415148CD44chr1135160917+ENST00000358681EXT2chr1144265699+9842013800127
ENST00000415148CD44chr1135160917+ENST00000395673EXT2chr1144265699+14822013800127
ENST00000437706CD44chr1135160917+ENST00000358681EXT2chr1144265699+9842013800127
ENST00000437706CD44chr1135160917+ENST00000395673EXT2chr1144265699+14822013800127
ENST00000433354CD44chr1135160917+ENST00000358681EXT2chr1144265699+9842013800127
ENST00000433354CD44chr1135160917+ENST00000395673EXT2chr1144265699+14822013800127
ENST00000428726CD44chr1135160917+ENST00000358681EXT2chr1144265699+9731903691123
ENST00000428726CD44chr1135160917+ENST00000395673EXT2chr1144265699+14711903691123
ENST00000526669CD44chr1135160917+ENST00000358681EXT2chr1144265699+9721893680123
ENST00000526669CD44chr1135160917+ENST00000395673EXT2chr1144265699+14701893680123
ENST00000433892CD44chr1135160917+ENST00000358681EXT2chr1144265699+9661833620121
ENST00000433892CD44chr1135160917+ENST00000395673EXT2chr1144265699+14641833620121
ENST00000278386CD44chr1135160917+ENST00000358681EXT2chr1144265699+86885264188
ENST00000278386CD44chr1135160917+ENST00000395673EXT2chr1144265699+136685264188
ENST00000434472CD44chr1135160917+ENST00000358681EXT2chr1144265699+86178257086
ENST00000434472CD44chr1135160917+ENST00000395673EXT2chr1144265699+135978257086
ENST00000352818CD44chr1135160917+ENST00000358681EXT2chr1144265699+85067246182
ENST00000352818CD44chr1135160917+ENST00000395673EXT2chr1144265699+134867246182

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000263398ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.88027860.11972134
ENST00000263398ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.953264240.046735715
ENST00000526025ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.69420720.30579284
ENST00000526025ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.761829440.2381706
ENST00000449691ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.743095160.2569048
ENST00000449691ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.76691050.23308952
ENST00000360158ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.743095160.2569048
ENST00000360158ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.76691050.23308952
ENST00000415148ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.743095160.2569048
ENST00000415148ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.76691050.23308952
ENST00000437706ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.743095160.2569048
ENST00000437706ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.76691050.23308952
ENST00000433354ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.743095160.2569048
ENST00000433354ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.76691050.23308952
ENST00000428726ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.81648630.18351373
ENST00000428726ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.78881710.21118283
ENST00000526669ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.81727390.18272607
ENST00000526669ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.80691120.19308889
ENST00000433892ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.82139840.17860162
ENST00000433892ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.809697150.19030288
ENST00000278386ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.8586450.14135493
ENST00000278386ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.82902070.17097937
ENST00000434472ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.827886640.17211333
ENST00000434472ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.74553920.2544608
ENST00000352818ENST00000358681CD44chr1135160917+EXT2chr1144265699+0.889499660.11050034
ENST00000352818ENST00000395673CD44chr1135160917+EXT2chr1144265699+0.909825270.09017473

Top

Fusion Genomic Features for CD44-EXT2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CD44chr1135160917+EXT2chr1144265698+0.0002247640.99977523
CD44chr1135160917+EXT2chr1144265698+0.0002247640.99977523

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for CD44-EXT2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr11:35160917/chr11:44265699)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CD44

P16070

EXT2

Q93063

FUNCTION: Cell-surface receptor that plays a role in cell-cell interactions, cell adhesion and migration, helping them to sense and respond to changes in the tissue microenvironment (PubMed:16541107, PubMed:19703720, PubMed:22726066). Participates thereby in a wide variety of cellular functions including the activation, recirculation and homing of T-lymphocytes, hematopoiesis, inflammation and response to bacterial infection (PubMed:7528188). Engages, through its ectodomain, extracellular matrix components such as hyaluronan/HA, collagen, growth factors, cytokines or proteases and serves as a platform for signal transduction by assembling, via its cytoplasmic domain, protein complexes containing receptor kinases and membrane proteases (PubMed:18757307, PubMed:23589287). Such effectors include PKN2, the RhoGTPases RAC1 and RHOA, Rho-kinases and phospholipase C that coordinate signaling pathways promoting calcium mobilization and actin-mediated cytoskeleton reorganization essential for cell migration and adhesion (PubMed:15123640). {ECO:0000269|PubMed:15123640, ECO:0000269|PubMed:16541107, ECO:0000269|PubMed:18757307, ECO:0000269|PubMed:19703720, ECO:0000269|PubMed:22726066, ECO:0000269|PubMed:23589287, ECO:0000269|PubMed:7528188}.FUNCTION: Glycosyltransferase required for the biosynthesis of heparan-sulfate. The EXT1/EXT2 complex possesses substantially higher glycosyltransferase activity than EXT1 or EXT2 alone. Appears to be a tumor suppressor. Required for the exosomal release of SDCBP, CD63 and syndecan (PubMed:22660413). {ECO:0000269|PubMed:22660413}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+19150_15822362.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+14150_15822140.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+18150_15822341.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+110150_15822397.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+117150_15822700.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+118150_15822743.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+112150_15822494.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+110150_15822430.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+117150_15822675.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+117150_15822700.0Compositional biasNote=Arg/Lys-rich (basic)
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+1932_12022362.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+1432_12022140.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+1832_12022341.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+11032_12022397.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+11732_12022700.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+11832_12022743.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+11232_12022494.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+11032_12022430.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+11732_12022675.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+11732_12022700.0DomainLink
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+19224_64922362.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+14224_64922140.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+18224_64922341.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+110224_64922397.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+117224_64922700.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+118224_64922743.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+112224_64922494.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+110224_64922430.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+117224_64922675.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+117224_64922700.0RegionNote=Stem
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+1921_64922362.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+19671_74222362.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+1421_64922140.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+14671_74222140.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+1821_64922341.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+18671_74222341.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+11021_64922397.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+110671_74222397.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+11721_64922700.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+117671_74222700.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+11821_64922743.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+118671_74222743.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+11221_64922494.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+112671_74222494.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+11021_64922430.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+110671_74222430.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+11721_64922675.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+117671_74222675.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+11721_64922700.0Topological domainExtracellular
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+117671_74222700.0Topological domainCytoplasmic
HgeneCD44chr11:35160917chr11:44265699ENST00000263398+19650_67022362.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000278386+14650_67022140.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000352818+18650_67022341.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000360158+110650_67022397.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000415148+117650_67022700.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000428726+118650_67022743.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000433892+112650_67022494.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000434472+110650_67022430.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000437706+117650_67022675.0TransmembraneHelical
HgeneCD44chr11:35160917chr11:44265699ENST00000449691+117650_67022700.0TransmembraneHelical
TgeneEXT2chr11:35160917chr11:44265699ENST000003436311214517_522672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003436311214538_540672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003436311214624_628672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003436311214662_673672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003586811315517_522682729.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003586811315538_540682729.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003586811315624_628682729.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003586811315662_673682729.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003956731214517_522705752.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003956731214538_540705752.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003956731214624_628705752.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000003956731214662_673705752.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000005336081214517_522672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000005336081214538_540672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000005336081214624_628672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST000005336081214662_673672719.0RegionSubstrate binding
TgeneEXT2chr11:35160917chr11:44265699ENST0000034363112141_25672719.0Topological domainCytoplasmic
TgeneEXT2chr11:35160917chr11:44265699ENST00000343631121447_718672719.0Topological domainLumenal
TgeneEXT2chr11:35160917chr11:44265699ENST0000035868113151_25682729.0Topological domainCytoplasmic
TgeneEXT2chr11:35160917chr11:44265699ENST00000358681131547_718682729.0Topological domainLumenal
TgeneEXT2chr11:35160917chr11:44265699ENST0000039567312141_25705752.0Topological domainCytoplasmic
TgeneEXT2chr11:35160917chr11:44265699ENST00000395673121447_718705752.0Topological domainLumenal
TgeneEXT2chr11:35160917chr11:44265699ENST0000053360812141_25672719.0Topological domainCytoplasmic
TgeneEXT2chr11:35160917chr11:44265699ENST00000533608121447_718672719.0Topological domainLumenal
TgeneEXT2chr11:35160917chr11:44265699ENST00000343631121426_46672719.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneEXT2chr11:35160917chr11:44265699ENST00000358681131526_46682729.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneEXT2chr11:35160917chr11:44265699ENST00000395673121426_46705752.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneEXT2chr11:35160917chr11:44265699ENST00000533608121426_46672719.0TransmembraneHelical%3B Signal-anchor for type II membrane protein


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Fusion Gene Sequence for CD44-EXT2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>14513_14513_1_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000358681_length(transcript)=1284nt_BP=501nt
GAGAAGAAAGCCAGTGCGTCTCTGGGCGCAGGGGCCAGTGGGGCTCGGAGGCACAGGCACCCCGCGACACTCCAGGTTCCCCGACCCACG
TCCCTGGCAGCCCCGATTATTTACAGCCTCAGCAGAGCACGGGGCGGGGGCAGAGGGGCCCGCCCGGGAGGGCTGCTACTTCTTAAAACC
TCTGCGGGCTGCTTAGTCACAGCCCCCCTTGCTTGGGTGTGTCCTTCGCTCGCTCCCTCCCTCCGTCTTAGGTCACTGTTTTCAACCTCG
AATAAAAACTGCAGCCAACTTCCGAGGCAGCCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCC
TCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGT
GGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGAC
CATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGG
CAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAG
TAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAAT
ATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTT
GTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGA
CTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAA
TGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCT
GGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGA

>14513_14513_1_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------
>14513_14513_2_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1782nt_BP=501nt
GAGAAGAAAGCCAGTGCGTCTCTGGGCGCAGGGGCCAGTGGGGCTCGGAGGCACAGGCACCCCGCGACACTCCAGGTTCCCCGACCCACG
TCCCTGGCAGCCCCGATTATTTACAGCCTCAGCAGAGCACGGGGCGGGGGCAGAGGGGCCCGCCCGGGAGGGCTGCTACTTCTTAAAACC
TCTGCGGGCTGCTTAGTCACAGCCCCCCTTGCTTGGGTGTGTCCTTCGCTCGCTCCCTCCCTCCGTCTTAGGTCACTGTTTTCAACCTCG
AATAAAAACTGCAGCCAACTTCCGAGGCAGCCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCC
TCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGT
GGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGAC
CATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGG
CAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAG
TAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAAT
ATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTT
GTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGA
CTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAA
TGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCT
GGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGA
TTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTA
ACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAG
AAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTT
TTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGT
GACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATG

>14513_14513_2_CD44-EXT2_CD44_chr11_35160917_ENST00000263398_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------
>14513_14513_3_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000358681_length(transcript)=868nt_BP=85nt
CCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAG
AGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACT
TTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGA
GAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAA
CCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGAT
GGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGT
AACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGG
GTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGT
GGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATG

>14513_14513_3_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=88AA_BP=1

--------------------------------------------------------------
>14513_14513_4_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1366nt_BP=85nt
CCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAG
AGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACT
TTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGA
GAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAA
CCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGAT
GGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGT
AACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGG
GTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGT
GGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATG
AGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACACCAATTCCTGATAG
TCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGGGAACACACGCCAGG
AGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGAAACCTCCAGAGGAA
TCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAAGGAGTCGC
TCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTATAAACTTAA
CATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCTGGTATATTTAAATCATTAAATTTCAG

>14513_14513_4_CD44-EXT2_CD44_chr11_35160917_ENST00000278386_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=88AA_BP=1

--------------------------------------------------------------
>14513_14513_5_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000358681_length(transcript)=850nt_BP=67nt
ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTG
CTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGA
GCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAG
CACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACA
AGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATG
CCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAAC
TTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTT
TAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCT
TGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTT

>14513_14513_5_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=82AA_BP=1

--------------------------------------------------------------
>14513_14513_6_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1348nt_BP=67nt
ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTG
CTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGA
GCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAG
CACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACA
AGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATG
CCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAAC
TTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTT
TAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCT
TGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTT
TGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTC
TCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCT
CTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATT
AGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAA
AAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTC

>14513_14513_6_CD44-EXT2_CD44_chr11_35160917_ENST00000352818_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=82AA_BP=1

--------------------------------------------------------------
>14513_14513_7_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000358681_length(transcript)=984nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC

>14513_14513_7_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_8_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1482nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC
TGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACT
GTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCT
GCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAAC
AGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGG
TCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTT
CTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCT

>14513_14513_8_CD44-EXT2_CD44_chr11_35160917_ENST00000360158_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_9_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000358681_length(transcript)=984nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC

>14513_14513_9_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_10_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1482nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC
TGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACT
GTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCT
GCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAAC
AGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGG
TCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTT
CTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCT

>14513_14513_10_CD44-EXT2_CD44_chr11_35160917_ENST00000415148_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_11_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000358681_length(transcript)=973nt_BP=190nt
AGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCC
TTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTG
GCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCC
TGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAG
GCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGG
CATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTT
CTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTG
TTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGG
GGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAA
GCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGAT

>14513_14513_11_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_12_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1471nt_BP=190nt
AGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCC
TTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTG
GCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCC
TGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAG
GCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGG
CATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTT
CTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTG
TTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGG
GGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAA
GCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGAT
CCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAAC
ACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTG
GGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAG
AAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGC
CATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTT
TTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCTGGTATATTTAA

>14513_14513_12_CD44-EXT2_CD44_chr11_35160917_ENST00000428726_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_13_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000358681_length(transcript)=984nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC

>14513_14513_13_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_14_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1482nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC
TGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACT
GTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCT
GCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAAC
AGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGG
TCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTT
CTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCT

>14513_14513_14_CD44-EXT2_CD44_chr11_35160917_ENST00000433354_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_15_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000358681_length(transcript)=966nt_BP=183nt
CCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCC
CGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGA
TCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAA
AGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGA
CAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCAC
CCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGA
TCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAG
TTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCA
TGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAAC
ATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCA

>14513_14513_15_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=121AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_16_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1464nt_BP=183nt
CCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCC
CGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGA
TCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAA
AGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGA
CAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCAC
CCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGA
TCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAG
TTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCA
TGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAAC
ATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCA
GTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACACCAATT
CCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGGGAACAC
ACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGAAACCTC
CAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAA
GGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTAT
AAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCTGGTATATTTAAATCATTA

>14513_14513_16_CD44-EXT2_CD44_chr11_35160917_ENST00000433892_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=121AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_17_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000358681_length(transcript)=861nt_BP=78nt
CTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCAT
CAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGA
GAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACA
AGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTT
TCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCT
TCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATC
TGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCA
GACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTT
GATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATT

>14513_14513_17_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=86AA_BP=1

--------------------------------------------------------------
>14513_14513_18_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1359nt_BP=78nt
CTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCAT
CAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGA
GAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACA
AGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTT
TCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCT
TCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATC
TGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCA
GACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTT
GATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATT
CCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACACCAATTCCTGATAGTCCAAGG
AACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGGGAACACACGCCAGGAGGAATG
TCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGAAACCTCCAGAGGAATCTGTTT
GCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAAGGAGTCGCTCTAGCT
GGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTATAAACTTAACATTAGC
CAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCTGGTATATTTAAATCATTAAATTTCAGCATTTAC

>14513_14513_18_CD44-EXT2_CD44_chr11_35160917_ENST00000434472_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=86AA_BP=1

--------------------------------------------------------------
>14513_14513_19_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000358681_length(transcript)=984nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC

>14513_14513_19_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_20_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1482nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC
TGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACT
GTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCT
GCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAAC
AGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGG
TCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTT
CTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCT

>14513_14513_20_CD44-EXT2_CD44_chr11_35160917_ENST00000437706_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_21_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000358681_length(transcript)=984nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC

>14513_14513_21_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_22_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1482nt_BP=201nt
CCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGAT
CCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGC
CGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGC
TGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGT
CTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTAC
TTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTG
TTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGA
GGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCAT
TTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAAT
TCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGC
TGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACT
GTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCT
GCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAAC
AGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGG
TCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTT
CTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCT

>14513_14513_22_CD44-EXT2_CD44_chr11_35160917_ENST00000449691_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=127AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_23_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000358681_length(transcript)=1272nt_BP=489nt
AGTGCGTCTCTGGGCGCAGGGGCCAGTGGGGCTCGGAGGCACAGGCACCCCGCGACACTCCAGGTTCCCCGACCCACGTCCCTGGCAGCC
CCGATTATTTACAGCCTCAGCAGAGCACGGGGCGGGGGCAGAGGGGCCCGCCCGGGAGGGCTGCTACTTCTTAAAACCTCTGCGGGCTGC
TTAGTCACAGCCCCCCTTGCTTGGGTGTGTCCTTCGCTCGCTCCCTCCCTCCGTCTTAGGTCACTGTTTTCAACCTCGAATAAAAACTGC
AGCCAACTTCCGAGGCAGCCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCC
TGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCT
GGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAA
GGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAA
CGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAG
GGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCT
CGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCC
AGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAG
AGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCA
GGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCAC
AGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTT

>14513_14513_23_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------
>14513_14513_24_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1770nt_BP=489nt
AGTGCGTCTCTGGGCGCAGGGGCCAGTGGGGCTCGGAGGCACAGGCACCCCGCGACACTCCAGGTTCCCCGACCCACGTCCCTGGCAGCC
CCGATTATTTACAGCCTCAGCAGAGCACGGGGCGGGGGCAGAGGGGCCCGCCCGGGAGGGCTGCTACTTCTTAAAACCTCTGCGGGCTGC
TTAGTCACAGCCCCCCTTGCTTGGGTGTGTCCTTCGCTCGCTCCCTCCCTCCGTCTTAGGTCACTGTTTTCAACCTCGAATAAAAACTGC
AGCCAACTTCCGAGGCAGCCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCC
TGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCT
GGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAA
GGTGGTGGAACACCGAGCTGACCCTGTCCTGTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAA
CGTGTCATTGGTGGAGGTCTGAATGTGAGGCTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAG
GGTGGAAGGTTGACCTACTTGGATCTTGGCATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCT
CGAGCTATGCAACCTCTGTTCTTGTATTTCTTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCC
AGATTTAAATCCAGCTGAGGCTCCCTTTGTTTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAG
AGAAGCGTGTTAGCCCATTTGAGGTCTGGGGAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCA
GGGAACCAAACCCAGAATTCGGTGCAAAAGCCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCAC
AGGAAGAGCACCAGCCGCTGAGTCAGGATCCTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTT
TTTATTCCTTTTTCTACTGTGTCTTAAACACCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTG
GCCTGACAACAGTCTTCTGCCCATGTCTGGGAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAAT
CATAACCATTTTAAGAACAGATGACTCAGAAACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTG
TCAGAGAAAAACAGAGGGTCTGTACTAGCCATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCC
AAGGGGATGCCAAAATTTCTCTCATTCTTTTGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAAC

>14513_14513_24_CD44-EXT2_CD44_chr11_35160917_ENST00000526025_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=154AA_BP=
MGAGASGARRHRHPATLQVPRPTSLAAPIIYSLSRARGGGRGARPGGLLLLKTSAGCLVTAPLAWVCPSLAPSLRLRSLFSTSNKNCSQL

--------------------------------------------------------------
>14513_14513_25_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000358681_length(transcript)=972nt_BP=189nt
GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCT
TTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGG
CGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCT
GTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGG
CTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGC
ATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTC
TTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGT
TTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGG
GAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAG
CCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATC

>14513_14513_25_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000358681_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------
>14513_14513_26_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000395673_length(transcript)=1470nt_BP=189nt
GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCT
TTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGG
CGCAGATCGGTCAGAGTGCATCAACAAGTTTGCTTCAGTCTTCGGGACCATGCCTCTCAAGGTGGTGGAACACCGAGCTGACCCTGTCCT
GTACAAAGATGACTTTCCTGAGAAGCTGAAGAGCTTCCCCAACATTGGCAGCTTATGAAACGTGTCATTGGTGGAGGTCTGAATGTGAGG
CTGGGACAGAGGGAGAGAACAAGGCCTCCCAGCACTCTGATGTCAGAGTAGTAGGTTAAGGGTGGAAGGTTGACCTACTTGGATCTTGGC
ATGCACCCACCTAACCCACTTTCTCAAGAACAAGAACCTAGAATGAATATCCAAGCACCTCGAGCTATGCAACCTCTGTTCTTGTATTTC
TTATGATCTCTGATGGGTTCTTCTCGAAAATGCCAAGTGGAAGACTTTGTGGCATGCTCCAGATTTAAATCCAGCTGAGGCTCCCTTTGT
TTTCAGTTCCATGTAACAATCTGGAAGGAAACTTCACGGACAGGAAGACTGCTGGAGAAGAGAAGCGTGTTAGCCCATTTGAGGTCTGGG
GAATCATGTAAAGGGTACCCAGACCTCACTTTTAGTTATTTACATCAATGAGTTCTTTCAGGGAACCAAACCCAGAATTCGGTGCAAAAG
CCAAACATCTTGGTGGGATTTGATAAATGCCTTGGGACCTGGAGTGCTGGGCTTGTGCACAGGAAGAGCACCAGCCGCTGAGTCAGGATC
CTGTCAGTTCCATGAGCTATTCCTCTTTGGTTTGGCTTTTTGATATGATTAAAATTATTTTTTATTCCTTTTTCTACTGTGTCTTAAACA
CCAATTCCTGATAGTCCAAGGAACCACCTTTCTCCCTTGATATATTTAACTCCGTCTTTGGCCTGACAACAGTCTTCTGCCCATGTCTGG
GAACACACGCCAGGAGGAATGTCTGATACCCTCTGCATCAAGCGTAAGAAGGTCCCAAATCATAACCATTTTAAGAACAGATGACTCAGA
AACCTCCAGAGGAATCTGTTTGCTTCCTGATTAGATCCAGTCAATGTTTTAAAGGTATTGTCAGAGAAAAACAGAGGGTCTGTACTAGCC
ATGCAAGGAGTCGCTCTAGCTGGTACCCGTAAAAGTTGTGGGAATTGTGACCCCCATCCCAAGGGGATGCCAAAATTTCTCTCATTCTTT
TGGTATAAACTTAACATTAGCCAGGGAGGTTCTGGCTAACGTTAAATGCTGCTATACAACTGCTTTGCAACAGTTGCTGGTATATTTAAA

>14513_14513_26_CD44-EXT2_CD44_chr11_35160917_ENST00000526669_EXT2_chr11_44265699_ENST00000395673_length(amino acids)=123AA_BP=1
MSQPHIQTSTNDTFHKLPMLGKLFSFSGKSSLYRTGSARCSTTLRGMVPKTEANLLMHSDRSAPGSAARGRVPRLRATKTCPWCPERTEG

--------------------------------------------------------------

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Fusion Gene PPI Analysis for CD44-EXT2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CD44-EXT2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CD44-EXT2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource