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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CFB-PARN (FusionGDB2 ID:16084)

Fusion Gene Summary for CFB-PARN

check button Fusion gene summary
Fusion gene informationFusion gene name: CFB-PARN
Fusion gene ID: 16084
HgeneTgene
Gene symbol

CFB

PARN

Gene ID

629

5073

Gene namecomplement factor Bpoly(A)-specific ribonuclease
SynonymsAHUS4|ARMD14|BF|BFD|CFAB|CFBD|FB|FBI12|GBG|H2-Bf|PBF2DAN|DKCB6|PFBMFT4
Cytomap

6p21.33

16p13.12

Type of geneprotein-codingprotein-coding
Descriptioncomplement factor BB-factor, properdinC3 proacceleratorC3 proactivatorC3/C5 convertaseglycine-rich beta-glycoproteinproperdin factor Bpoly(A)-specific ribonuclease PARNdeadenylating nucleasedeadenylation nucleasepolyadenylate-specific ribonuclease
Modification date2020032720200313
UniProtAcc

P00751

.
Ensembl transtripts involved in fusion geneENST00000425368, ENST00000456570, 
ENST00000477310, ENST00000556679, 
ENST00000375455, ENST00000399981, 
ENST00000417261, ENST00000419411, 
ENST00000419920, ENST00000424727, 
ENST00000426239, ENST00000427888, 
ENST00000433503, ENST00000436692, 
ENST00000455591, ENST00000459734, 
ENST00000460958, ENST00000465211, 
ENST00000473139, ENST00000474621, 
ENST00000489605, ENST00000497841, 
ENST00000341484, ENST00000420015, 
ENST00000437198, ENST00000539279, 
ENST00000566021, 
Fusion gene scores* DoF score10 X 8 X 4=3209 X 8 X 4=288
# samples 129
** MAII scorelog2(12/320*10)=-1.41503749927884
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/288*10)=-1.67807190511264
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CFB [Title/Abstract] AND PARN [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCFB(31919364)-PARN(14565880), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePARN

GO:0000495

box H/ACA snoRNA 3'-end processing

22442037

TgenePARN

GO:0010587

miRNA catabolic process

25049417

TgenePARN

GO:0071051

polyadenylation-dependent snoRNA 3'-end processing

22442037


check buttonFusion gene breakpoints across CFB (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PARN (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/AAI207461CFBchr6

31919364

+PARNchr16

14565880

-


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Fusion Gene ORF analysis for CFB-PARN

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000425368ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000425368ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000425368ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000425368ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000425368ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000456570ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000456570ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000456570ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000456570ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000456570ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000477310ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000477310ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000477310ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000477310ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000477310ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000556679ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000556679ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000556679ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000556679ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
5CDS-intronENST00000556679ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000375455ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000375455ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000375455ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000375455ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000375455ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000399981ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000399981ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000399981ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000399981ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000399981ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000417261ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000417261ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000417261ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000417261ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000417261ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419411ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419411ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419411ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419411ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419411ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419920ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419920ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419920ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419920ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000419920ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000424727ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000424727ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000424727ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000424727ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000424727ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000426239ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000426239ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000426239ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000426239ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000426239ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000427888ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000427888ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000427888ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000427888ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000427888ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000433503ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000433503ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000433503ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000433503ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000433503ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000436692ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000436692ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000436692ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000436692ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000436692ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000455591ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000455591ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000455591ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000455591ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000455591ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000459734ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000459734ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000459734ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000459734ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000459734ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000460958ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000460958ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000460958ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000460958ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000460958ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000465211ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000465211ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000465211ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000465211ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000465211ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000473139ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000473139ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000473139ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000473139ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000473139ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000474621ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000474621ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000474621ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000474621ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000474621ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000489605ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000489605ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000489605ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000489605ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000489605ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000497841ENST00000341484CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000497841ENST00000420015CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000497841ENST00000437198CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000497841ENST00000539279CFBchr6

31919364

+PARNchr16

14565880

-
intron-intronENST00000497841ENST00000566021CFBchr6

31919364

+PARNchr16

14565880

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for CFB-PARN


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for CFB-PARN


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:31919364/:14565880)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CFB

P00751

.
FUNCTION: Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for CFB-PARN


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for CFB-PARN


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CFB-PARN


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CFB-PARN


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource