FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:CNOT4-EYS (FusionGDB2 ID:17773)

Fusion Gene Summary for CNOT4-EYS

check button Fusion gene summary
Fusion gene informationFusion gene name: CNOT4-EYS
Fusion gene ID: 17773
HgeneTgene
Gene symbol

CNOT4

EYS

Gene ID

4850

346007

Gene nameCCR4-NOT transcription complex subunit 4eyes shut homolog
SynonymsCLONE243|NOT4|NOT4HC6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1
Cytomap

7q33

6q12

Type of geneprotein-codingprotein-coding
DescriptionCCR4-NOT transcription complex subunit 4CCR4-associated factor 4E3 ubiquitin-protein ligase CNOT4NOT4 (negative regulator of transcription 4, yeast) homologRING-type E3 ubiquitin transferase CNOT4potential transcriptional repressor NOT4Hpprotein eyes shut homologEGF-like-domain, multiple 10EGF-like-domain, multiple 11epidermal growth factor-like protein 10epidermal growth factor-like protein 11protein spacemaker homolog
Modification date2020031320200313
UniProtAcc

O95628

Q5T1H1

Ensembl transtripts involved in fusion geneENST00000315544, ENST00000356162, 
ENST00000361528, ENST00000414802, 
ENST00000423368, ENST00000428680, 
ENST00000451834, ENST00000541284, 
ENST00000473470, 		ENST00000342421, 
ENST00000370618, ENST00000393380, 
ENST00000486069, ENST00000370616, 
ENST00000370621, ENST00000503581, 
Fusion gene scores* DoF score7 X 3 X 5=10536 X 24 X 15=12960
# samples 638
** MAII scorelog2(6/105*10)=-0.807354922057604
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(38/12960*10)=-5.09192248944104
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CNOT4 [Title/Abstract] AND EYS [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCNOT4(135122905)-EYS(65336138), # samples:1
Anticipated loss of major functional domain due to fusion event.CNOT4-EYS seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
CNOT4-EYS seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCNOT4

GO:0006511

ubiquitin-dependent protein catabolic process

26575292

HgeneCNOT4

GO:0045652

regulation of megakaryocyte differentiation

26575292

HgeneCNOT4

GO:0051865

protein autoubiquitination

15001359


check buttonFusion gene breakpoints across CNOT4 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across EYS (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-LN-A49WCNOT4chr7

135122905

-EYSchr6

65336138

-


Top

Fusion Gene ORF analysis for CNOT4-EYS

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000315544ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000315544ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000315544ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000315544ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000356162ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000356162ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000356162ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000356162ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000361528ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000361528ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000361528ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000361528ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000414802ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000414802ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000414802ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000414802ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000423368ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000423368ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000423368ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000423368ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000428680ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000428680ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000428680ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000428680ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000451834ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000451834ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000451834ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000451834ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000541284ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000541284ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000541284ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
5CDS-intronENST00000541284ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000315544ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000315544ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000315544ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000356162ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000356162ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000356162ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000361528ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000361528ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000361528ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000414802ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000414802ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000414802ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000423368ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000423368ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000423368ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000428680ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000428680ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000428680ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000451834ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000451834ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000451834ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000541284ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000541284ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
Frame-shiftENST00000541284ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-3CDSENST00000473470ENST00000370616CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-3CDSENST00000473470ENST00000370621CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-3CDSENST00000473470ENST00000503581CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-intronENST00000473470ENST00000342421CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-intronENST00000473470ENST00000370618CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-intronENST00000473470ENST00000393380CNOT4chr7

135122905

-EYSchr6

65336138

-
intron-intronENST00000473470ENST00000486069CNOT4chr7

135122905

-EYSchr6

65336138

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for CNOT4-EYS


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for CNOT4-EYS


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:135122905/:65336138)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CNOT4

O95628

EYS

Q5T1H1

FUNCTION: Has E3 ubiquitin ligase activity, promoting ubiquitination and degradation of target proteins (PubMed:11823428, PubMed:22159038, PubMed:26575292). Involved in activation of the JAK/STAT pathway (PubMed:11823428, PubMed:22159038). Catalyzes ubiquitination of methylated RBM15 (PubMed:26575292). Plays a role in quality control of translation of mitochondrial outer membrane-localized mRNA (PubMed:29861391). As part of the PINK1-regulated signaling, upon mitochondria damage, ubiquitinates ABCE1 and thereby recruits autophagy receptors to the mitochondrial outer membrane to initiate mitophagy (PubMed:29861391). {ECO:0000269|PubMed:11823428, ECO:0000269|PubMed:22159038, ECO:0000269|PubMed:26575292, ECO:0000269|PubMed:29861391}.FUNCTION: Required to maintain the integrity of photoreceptor cells (PubMed:18836446). Specifically required for normal morphology of the photoreceptor ciliary pocket, and might thus facilitate protein trafficking between the photoreceptor inner and outer segments via the transition zone (By similarity). {ECO:0000250|UniProtKB:B8JI71, ECO:0000269|PubMed:18836446}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

Fusion Gene Sequence for CNOT4-EYS


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for CNOT4-EYS


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for CNOT4-EYS


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for CNOT4-EYS


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource