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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ACYP2-GSG1 (FusionGDB2 ID:1921)

Fusion Gene Summary for ACYP2-GSG1

check button Fusion gene summary
Fusion gene informationFusion gene name: ACYP2-GSG1
Fusion gene ID: 1921
HgeneTgene
Gene symbol

ACYP2

GSG1

Gene ID

98

83445

Gene nameacylphosphatase 2germ cell associated 1
SynonymsACYM|ACYP-
Cytomap

2p16.2

12p13.1

Type of geneprotein-codingprotein-coding
Descriptionacylphosphatase-2acylphosphatase 2, muscle typeacylphosphatase, muscle type isozymeacylphosphate phosphohydrolase 2testicular tissue protein Li 11germ cell-specific gene 1 proteintesticular secretory protein Li 20
Modification date2020031320200313
UniProtAcc

P14621

Q6UXU4

Ensembl transtripts involved in fusion geneENST00000303536, ENST00000394666, 
ENST00000406041, ENST00000422521, 
ENST00000458030, ENST00000606082, 
ENST00000606865, ENST00000607452, 
ENST00000324458, ENST00000337630, 
ENST00000396302, ENST00000396310, 
ENST00000457134, ENST00000351606, 
ENST00000432710, ENST00000537302, 
Fusion gene scores* DoF score9 X 8 X 6=4321 X 1 X 1=1
# samples 91
** MAII scorelog2(9/432*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(1/1*10)=3.32192809488736
Context

PubMed: ACYP2 [Title/Abstract] AND GSG1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointACYP2(54329767)-GSG1(13237759), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across ACYP2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across GSG1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/AAW025700ACYP2chr2

54329767

-GSG1chr12

13237759

+


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Fusion Gene ORF analysis for ACYP2-GSG1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000303536ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000303536ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000303536ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000303536ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000303536ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000394666ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000394666ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000394666ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000394666ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000394666ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000406041ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000406041ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000406041ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000406041ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000406041ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000422521ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000422521ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000422521ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000422521ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000422521ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000458030ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000458030ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000458030ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000458030ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000458030ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606082ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606082ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606082ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606082ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606082ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606865ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606865ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606865ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606865ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000606865ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000607452ENST00000324458ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000607452ENST00000337630ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000607452ENST00000396302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000607452ENST00000396310ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-3UTRENST00000607452ENST00000457134ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000303536ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000303536ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000303536ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000394666ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000394666ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000394666ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000406041ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000406041ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000406041ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000422521ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000422521ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000422521ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000458030ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000458030ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000458030ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606082ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606082ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606082ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606865ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606865ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000606865ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000607452ENST00000351606ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000607452ENST00000432710ACYP2chr2

54329767

-GSG1chr12

13237759

+
intron-intronENST00000607452ENST00000537302ACYP2chr2

54329767

-GSG1chr12

13237759

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ACYP2-GSG1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for ACYP2-GSG1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:54329767/:13237759)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ACYP2

P14621

GSG1

Q6UXU4

FUNCTION: Its physiological role is not yet clear.FUNCTION: As a component of the inner core of AMPAR complex, modifies AMPA receptor (AMPAR) gating. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ACYP2-GSG1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ACYP2-GSG1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ACYP2-GSG1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ACYP2-GSG1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource