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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:ADAMTS20-C12orf43 (FusionGDB2 ID:2085) |
Fusion Gene Summary for ADAMTS20-C12orf43 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ADAMTS20-C12orf43 | Fusion gene ID: 2085 | Hgene | Tgene | Gene symbol | ADAMTS20 | C12orf43 | Gene ID | 80070 | 64897 |
| Gene name | ADAM metallopeptidase with thrombospondin type 1 motif 20 | chromosome 12 open reading frame 43 | |
| Synonyms | ADAM-TS20|ADAMTS-20|GON-1 | Custos | |
| Cytomap | 12q12 | 12q24.31 | |
| Type of gene | protein-coding | protein-coding | |
| Description | A disintegrin and metalloproteinase with thrombospondin motifs 20a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 20 | protein CUSTOSuncharacterized protein C12orf43 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | . | . | |
| Ensembl transtripts involved in fusion gene | ENST00000389420, ENST00000395541, ENST00000553158, | ENST00000366211, ENST00000536407, ENST00000539736, ENST00000445832, ENST00000537817, ENST00000288757, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 2 X 2 X 2=8 |
| # samples | 2 | 2 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: ADAMTS20 [Title/Abstract] AND C12orf43 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ADAMTS20(43763093)-C12orf43(121442295), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | ADAMTS20-C12orf43 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. ADAMTS20-C12orf43 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene breakpoints across ADAMTS20 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across C12orf43 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | LGG | TCGA-DH-A7UT-01A | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
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Fusion Gene ORF analysis for ADAMTS20-C12orf43 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000389420 | ENST00000366211 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| 5CDS-intron | ENST00000389420 | ENST00000536407 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| 5CDS-intron | ENST00000389420 | ENST00000539736 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| Frame-shift | ENST00000389420 | ENST00000445832 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| Frame-shift | ENST00000389420 | ENST00000537817 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| In-frame | ENST00000389420 | ENST00000288757 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000395541 | ENST00000288757 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000395541 | ENST00000445832 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000395541 | ENST00000537817 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000553158 | ENST00000288757 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000553158 | ENST00000445832 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-3CDS | ENST00000553158 | ENST00000537817 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000395541 | ENST00000366211 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000395541 | ENST00000536407 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000395541 | ENST00000539736 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000553158 | ENST00000366211 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000553158 | ENST00000536407 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| intron-intron | ENST00000553158 | ENST00000539736 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000389420 | ADAMTS20 | chr12 | 43763093 | - | ENST00000288757 | C12orf43 | chr12 | 121442295 | - | 6983 | 5538 | 0 | 5540 | 1846 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000389420 | ENST00000288757 | ADAMTS20 | chr12 | 43763093 | - | C12orf43 | chr12 | 121442295 | - | 0.000179859 | 0.9998202 |
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Fusion Genomic Features for ADAMTS20-C12orf43 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ADAMTS20-C12orf43 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:43763093/chr12:121442295) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | . |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 612_723 | 1846 | 1911.0 | Compositional bias | Note=Cys-rich |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1024_1073 | 1846 | 1911.0 | Domain | TSP type-1 5 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1076_1135 | 1846 | 1911.0 | Domain | TSP type-1 6 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1152_1206 | 1846 | 1911.0 | Domain | TSP type-1 7 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1207_1264 | 1846 | 1911.0 | Domain | TSP type-1 8 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1304_1356 | 1846 | 1911.0 | Domain | TSP type-1 9 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1358_1416 | 1846 | 1911.0 | Domain | TSP type-1 10 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1417_1475 | 1846 | 1911.0 | Domain | TSP type-1 11 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1476_1531 | 1846 | 1911.0 | Domain | TSP type-1 12 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1535_1588 | 1846 | 1911.0 | Domain | TSP type-1 13 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1589_1652 | 1846 | 1911.0 | Domain | TSP type-1 14 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1654_1710 | 1846 | 1911.0 | Domain | TSP type-1 15 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 259_467 | 1846 | 1911.0 | Domain | Peptidase M12B |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 468_555 | 1846 | 1911.0 | Domain | Note=Disintegrin |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 556_611 | 1846 | 1911.0 | Domain | TSP type-1 1 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 846_904 | 1846 | 1911.0 | Domain | TSP type-1 2 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 905_961 | 1846 | 1911.0 | Domain | TSP type-1 3 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 966_1023 | 1846 | 1911.0 | Domain | TSP type-1 4 |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 724_846 | 1846 | 1911.0 | Region | Note=Spacer |
| Tgene | C12orf43 | chr12:43763093 | chr12:121442295 | ENST00000288757 | 4 | 6 | 148_152 | 150 | 263.0 | Compositional bias | Note=Poly-Ser | |
| Tgene | C12orf43 | chr12:43763093 | chr12:121442295 | ENST00000288757 | 4 | 6 | 186_244 | 150 | 263.0 | Compositional bias | Note=Lys-rich | |
| Tgene | C12orf43 | chr12:43763093 | chr12:121442295 | ENST00000288757 | 4 | 6 | 236_241 | 150 | 263.0 | Motif | Nucleolar localization signal (NLS) |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | ADAMTS20 | chr12:43763093 | chr12:121442295 | ENST00000389420 | - | 37 | 39 | 1711_1910 | 1846 | 1911.0 | Domain | GON |
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Fusion Gene Sequence for ADAMTS20-C12orf43 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >2085_2085_1_ADAMTS20-C12orf43_ADAMTS20_chr12_43763093_ENST00000389420_C12orf43_chr12_121442295_ENST00000288757_length(transcript)=6983nt_BP=5538nt ATGTGGGTGGCCAAGTGGCTGACTGGGCTGCTCTACCATCTCTCGCTCTTCATCACCAGGTCTTGGGAAGTTGACTTCCACCCCAGGCAA GAAGCCCTGGTGAGGACACTGACCTCCTACGAAGTAGTGATCCCCGAGCGGGTCAATGAGTTTGGAGAAGTGTTCCCTCAGAGCCACCAC TTCAGCCGGCAGAAACGCAGCTCCGAGGCGCTGGAACCCATGCCGTTCCGAACCCACTATCGCTTCACTGCCTACGGGCAGCTCTTCCAG CTGAACCTGACCGCCGATGCATCCTTTCTGGCCGCCGGCTACACCGAGGTGCACTTGGGAACCCCGGAGCGCGGGGCCTGGGAGAGCGAC GCAGGGCCCTCGGACCTGCGCCACTGCTTCTACCGCGGCCAGGTCAACTCACAGGAGGATTACAAGGCCGTCGTCAGCTTATGCGGAGGC CTGACGGGAACATTTAAAGGACAGAACGGTGAATATTTCTTAGAACCTATAATGAAGGCAGATGGGAATGAATATGAAGATGGTCACAAC AAGCCACATCTTATATACAGACAAGACTTAAATAACTCTTTTCTGCAGACTCTGAAGTATTGCAGTGTGTCAGAAAGTCAAATAAAGGAA ACCAGTTTACCCTTTCATACCTACAGCAACATGAATGAAGATCTTAATGTAATGAAAGAAAGAGTTTTAGGACACACATCAAAAAATGTA CCATTGAAAGATGAAAGAAGACATTCCAGGAAAAAACGTCTTATATCATATCCAAGATACATTGAAATTATGGTTACAGCTGATGCTAAA GTGGTTTCTGCTCATGGATCGAATTTGCAAAACTATATACTGACTCTAATGTCAATTGTTGCAACAATCTACAAAGATCCAAGTATTGGA AATTTGATACACATAGTAGTGGTAAAATTAGTTATGATTCACCGTGAGGAGGAAGGACCAGTCATTAATTTTGATGGTGCTACCACATTA AAGAACTTTTGTTCATGGCAACAAACTCAGAATGACCTTGATGATGTTCACCCTTCCCACCATGACACTGCTGTTCTTATCACTAGGGAA GACATTTGTTCATCTAAAGAGAAATGTAACATGTTAGGTTTATCATATTTAGGTACCATATGTGATCCTTTACAAAGCTGCTTTATTAAT GAAGAAAAAGGACTCATTTCTGCTTTTACTATAGCCCATGAGCTTGGGCACACACTTGGTGTTCAACATGATGATAATCCTAGATGTAAA GAAATGAAAGTTACAAAGTATCATGTAATGGCCCCTGCTTTAAGTTTTCACATGAGTCCTTGGAGCTGGTCAAACTGTAGTCGGAAATAT GTTACTGAATTCCTAGATACTGGTTACGGGGAATGTCTTCTTGACAAACCAGATGAAGAAATATATAATCTGCCTTCAGAACTTCCTGGA TCACGATATGATGGAAACAAGCAGTGTGAGCTTGCGTTTGGTCCTGGGTCACAAATGTGTCCCCATATAAATATATGCATGCATCTGTGG TGCACAAGCACAGAAAAGCTTCACAAAGGCTGTTTCACTCAACACGTGCCACCAGCAGATGGAACAGACTGCGGTCCTGGAATGCATTGC CGTCATGGGCTATGTGTAAACAAAGAAACGGAAACACGTCCTGTAAATGGTGAATGGGGACCATGGGAACCTTACAGTTCTTGTTCAAGA ACATGTGGAGGCGGAATCGAAAGTGCAACCAGGCGCTGTAATCGTCCTGAGCCAAGAAACGGAGGAAATTACTGTGTGGGCCGCAGGATG AAATTTCGATCATGTAATACTGATTCATGTCCAAAAGGCACACAAGACTTTCGAGAGAAGCAGTGCTCTGATTTTAATGGTAAACATTTG GACATCAGTGGCATTCCCTCTAATGTGAGGTGGCTTCCAAGATACAGTGGCATTGGCACAAAGGATCGTTGTAAACTCTATTGTCAGGTT GCTGGAACCAATTATTTCTACCTATTGAAGGATATGGTTGAAGATGGTACTCCTTGTGGAACTGAAACTCATGACATCTGTGTTCAAGGC CAGTGTATGGCAGCTGGTTGTGATCACGTGTTAAACTCCAGTGCCAAGATAGACAAATGTGGAGTGTGTGGTGGGGACAACTCTTCATGC AAGACAATAACAGGTGTCTTCAACAGTTCTCATTATGGTTATAATGTTGTTGTAAAGATTCCCGCAGGAGCAACAAACGTTGACATTCGT CAGTACAGCTATTCTGGACAACCAGATGACAGTTACCTTGCATTATCTGACGCTGAAGGGAATTTTCTTTTCAATGGAAATTTTCTTCTA AGTACGTCAAAAAAAGAAATCAATGTGCAAGGAACAAGAACTGTTATTGAATACAGTGGATCAAATAACGCAGTTGAAAGAATTAATAGT ACTAATCGACAAGAGAAAGAACTTATTTTGCAGGTGTTGTGTGTGGGTAATTTATACAACCCTGATGTACATTATTCCTTCAATATCCCT TTGGAAGAGAGGAGTGACATGTTCACATGGGACCCCTATGGACCATGGGAAGGCTGTACCAAAATGTGTCAAGGTCTTCAGCGAAGAAAC ATAACTTGCATACATAAGAGTGATCATAGTGTTGTGTCTGATAAAGAATGTGACCACTTGCCACTTCCATCATTTGTTACTCAAAGTTGC AATACAGACTGTGAACTAAGGTGGCATGTTATTGGCAAAAGTGAATGTTCATCCCAATGTGGTCAAGGATATAGAACCTTGGACATCCAT TGCATGAAGTATTCCATTCATGAAGGACAGACTGTTCAAGTTGATGACCACTACTGTGGTGACCAGCTTAAACCTCCTACCCAAGAACTA TGCCATGGTAACTGTGTCTTCACAAGATGGCATTATTCAGAATGGTCTCAGTGTTCCAGGAGTTGTGGAGGAGGGGAAAGGTCTCGAGAA TCTTATTGTATGAATAACTTTGGCCATCGTCTTGCTGACAATGAATGCCAAGAACTGTCCCGAGTGACGAGAGAGAATTGCAATGAATTT TCCTGTCCCAGTTGGGCTGCTAGTGAATGGAGCGAGTGCCTTGTTACATGTGGTAAAGGAACAAAGCAGCGGCAGGTATGGTGTCAGCTG AATGTAGATCACTTGAGTGATGGCTTCTGTAATTCAAGTACCAAACCTGAATCTCTGAGTCCATGTGAACTTCATACATGTGCTTCCTGG CAAGTAGGACCATGGGGTCCTTGCACAACCACATGTGGACATGGGTATCAGATGCGAGATGTTAAATGTGTCAATGAGCTAGCTAGTGCA GTGTTAGAGGACACAGAATGCCATGAAGCTAGTCGCCCCAGTGACAGACAGAGCTGTGTACTTACACCTTGCTCATTTATTTCTAAACTT GAGACCGCTTTATTACCAACTGTTCTCATAAAAAAGATGGCACAATGGCGACATGGTTCTTGGACCCCATGCTCCGTATCTTGTGGAAGA GGTACTCAAGCCCGCTATGTAAGCTGTCGTGATGCTCTTGATAGAATAGCAGATGAATCATATTGTGCCCACTTACCCCGACCTGCTGAA ATATGGGACTGTTTTACCCCTTGTGGAGAGTGGCAAGCAGGGGATTGGTCACCCTGTTCAGCTTCCTGTGGCCATGGAAAAACAACTCGA CAAGTTTTATGCATGAACTACCATCAGCCAATTGATGAGAATTACTGTGATCCTGAAGTTCGCCCTTTGATGGAACAGGAATGTAGCCTG GCAGCCTGCCCTCCTGCACACAGCCACTTTCCTAGTTCCCCTGTGCAGCCAAGCTATTATCTAAGCACGAATTTGCCATTAACTCAAAAA CTTGAAGATAATGAAAATCAGGTGGTCCATCCATCAGTCAGAGGAAACCAGTGGAGAACCGGACCATGGGGATCATGCTCCAGCAGTTGT TCTGGAGGTCTTCAGCATAGGGCTGTGGTCTGCCAGGATGAAAATGGACAAAGTGCTAGTTACTGCGATGCAGCCTCCAAGCCTCCAGAG TTACAGCAATGTGGTCCAGGGCCTTGTCCACAGTGGAACTACGGAAATTGGGGAGAATGTTCACAAACATGTGGAGGAGGAATAAAATCA AGACTTGTAATATGTCAATTTCCCAATGGCCAAATATTAGAAGATCACAACTGTGAAATTGTAAACAAGCCACCTAGCGTAATACAGTGT CATATGCATGCTTGCCCTGCTGATGTGTCATGGCATCAGGAACCATGGACATCGTGCTCAGCTTCTTGTGGTAAAGGTAGAAAGTACCGT GAAGTGTTTTGCATTGACCAATTCCAAAGGAAATTAGAAGACACAAATTGCAGTCAAGTACAGAAACCTCCAACTCACAAAGCCTGTAGA TCTGTCAGATGCCCTTCATGGAAAGCCAATAGCTGGAATGAGTGCTCTGTGACCTGTGGCTCTGGAGTTCAGCAGAGGGATGTATACTGC AGACTGAAAGGTGTTGGTCAGGTGGTTGAAGAAATGTGTGATCAGTCCACCCGACCTTGTTCTCAGAGGCGATGTTGGAGTCAGGACTGT GTGCAGCACAAGGGGATGGAAAGAGGGAGGCTGAATTGTTCAACATCATGTGAGAGAAAAGATTCACATCAACGAATGGAGTGCACAGAT AACCAAATCAGACAAGTGAATGAAATAGTCTATAATTCTTCAACCATATCTCTTACATCCAAGAATTGCAGGAACCCTCCTTGCAATTAC ATTGTGGTAACAGCAGACTCATCACAGTGTGCAAACAACTGTGGATTTAGTTACAGACAAAGGATTACATATTGCACCGAGATCCCATCT ACTAAGAAACATAAGCTCCATCGACTTCGGCCTATAGTTTATCAAGAATGCCCTGTGGTGCCTTCCTCTCAGGTTTACCAATGCATTAAC AGCTGTTTGCATTTGGCCACTTGGAAAGTTGGAAAATGGAGCAAGTGCTCAGTGACTTGTGGAATTGGGATAATGAAGAGACAAGTGAAA TGCATTACCAAACATGGTTTGTCCAGTGACTTATGTTTAAACCATTTAAAACCAGGTGCTCAAAAGAAATGTTATGCCAATGACTGTAAA TCATTTACCACCTGCAAAGAAATTCAAGTGAAAAACCACATTAGAAAGGATGGTGACTATTACCTTAACATTAAGGGAAGAATAATAAAG ATTTATTGTGCAGACATGTACTTGGAGAACCCTAAGGAATATTTAACACTGGTCCAAGGTGAAGAAAACTTTTCTGAAGTGTATGGCTTT AGACTAAAAAATCCATATCAATGTCCTTTTAATGGGAGTAGAAGGGAAGACTGTGAATGTGACAATGGACACTTAGCTGCTGGATACACT GTTTTCAGCAAAATAAGAATTGATCTCACTTCCATGCAAATTAAAACTACGGACCTTCTTTTTTCCAAAACAATATTTGGAAATGCAGTT CCATTTGCCACAGCTGGAGATTGCTACAGTGCTTTCAGATGCCCACAGTGAGGACAGTGACGAGGAGTGGCGGCGGTGCCGGGAGGCAGC TGTGTCGGCGTCCGACATCCTACAGGAGTCAGCCATCCACAGCCCTGGAACAGTGGAGAAGGAGGCAAAGAAGAAAAGGAAGTTGAAAAA GAAAGCCAAGAAGGTGGCCAGTGTCGACTCGGCTGTCGCTGCCACCACCCCCACCAGCATGGCCACAGTCCAGAAGCAGAAGTCAGGTGA GCTCAACGGGGACCAGGTGTCGCTTGGGACCAAAAAGAAGAAAAAGGCAAAGAAGGCCAGCGAGACCTCTCCATTCCCACCAGCAAAGAG TGCTACAGCTATACCTGCAAACTGAACCCAGCCATGGGCACAGGGCTCAGCCAGCTCCAAGGACAAGGTGTCCCCCCCACCCTGGGGACA AGGCATTTCCAAGCCCCACCTCCCTCTCCAAGTTCAAGGACTGGGCTGGCAAACCCAGACTGCCCATGAGACCCTGATGGTGATGAAGGC TTGCTCGAGAGTTGGGCCAAAAAAGTGGCTGTAGGGTGAGAAGACCAATCAAGGCCTGCCCCTCTGTGCTCCCACGGAGGGCTGGCGGGG GCGCTGTGGTTCCAGAACATTTCATGACCTCAGGAAAAAAGGAACCTTCCAGTTATTTGAGACTAGTGGCCAAGTGGTGAAACCTCCATC TCCCTAGAACTGTCTGAGGTGGGCAGGGGAAGGGAGACCTTCCCCACCACCTCCTTAGCCTGGTGTGAGAAACAGTTTTTAGAAAATGAG AGAAGGGATCCCCAAGAGGCCAAGGCCCAGAGAAACTTTTGTTCTTCTCTCCTTAGCCCACATAGACTTCACAGAATCGTCTGAGAAAGG AGAGCTTTTTCACCCCTGGCTTTCTAGAATTTTCTTTGTCTGCATTTGTGAATATACCACACATGATGGTGTCTCTGAGCCGACCAGATT ATGGAAACTCAATTGTCAGAGGACCCAAAACAAAACTTAGAGTGATTTGGATATTGCCTCTCTGTCAATGCTGAACCTTAAGACATTTTA AGTAAACATCCTCCTCCTCTCTACACCCCCAGGATTTGTGCGTTCACCCCACCCAAGACTTCAGGAAGTGTCATAGCACTCGTGGACTAG GTTTCATGGGACAAAGGCATTCTGCAAGAAGTAGAAGCTTGTGGCCGGGTGCAGTGGCTCATGCCTGTAATCCAAGCATTTTGAGAGGCC AAGGAGGTGGATCAATTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAGACCCCATCTCTACTAAAAATACAAAAATTAGCT GAGCATGTTGACACACGCCCGTAATCCCAGCTACTCAGGAGGCTGAGGTGGGAGAATCGCTTGAACCCAGGAGGTGCAGGTTGCAGTGAG >2085_2085_1_ADAMTS20-C12orf43_ADAMTS20_chr12_43763093_ENST00000389420_C12orf43_chr12_121442295_ENST00000288757_length(amino acids)=1846AA_BP= MWVAKWLTGLLYHLSLFITRSWEVDFHPRQEALVRTLTSYEVVIPERVNEFGEVFPQSHHFSRQKRSSEALEPMPFRTHYRFTAYGQLFQ LNLTADASFLAAGYTEVHLGTPERGAWESDAGPSDLRHCFYRGQVNSQEDYKAVVSLCGGLTGTFKGQNGEYFLEPIMKADGNEYEDGHN KPHLIYRQDLNNSFLQTLKYCSVSESQIKETSLPFHTYSNMNEDLNVMKERVLGHTSKNVPLKDERRHSRKKRLISYPRYIEIMVTADAK VVSAHGSNLQNYILTLMSIVATIYKDPSIGNLIHIVVVKLVMIHREEEGPVINFDGATTLKNFCSWQQTQNDLDDVHPSHHDTAVLITRE DICSSKEKCNMLGLSYLGTICDPLQSCFINEEKGLISAFTIAHELGHTLGVQHDDNPRCKEMKVTKYHVMAPALSFHMSPWSWSNCSRKY VTEFLDTGYGECLLDKPDEEIYNLPSELPGSRYDGNKQCELAFGPGSQMCPHINICMHLWCTSTEKLHKGCFTQHVPPADGTDCGPGMHC RHGLCVNKETETRPVNGEWGPWEPYSSCSRTCGGGIESATRRCNRPEPRNGGNYCVGRRMKFRSCNTDSCPKGTQDFREKQCSDFNGKHL DISGIPSNVRWLPRYSGIGTKDRCKLYCQVAGTNYFYLLKDMVEDGTPCGTETHDICVQGQCMAAGCDHVLNSSAKIDKCGVCGGDNSSC KTITGVFNSSHYGYNVVVKIPAGATNVDIRQYSYSGQPDDSYLALSDAEGNFLFNGNFLLSTSKKEINVQGTRTVIEYSGSNNAVERINS TNRQEKELILQVLCVGNLYNPDVHYSFNIPLEERSDMFTWDPYGPWEGCTKMCQGLQRRNITCIHKSDHSVVSDKECDHLPLPSFVTQSC NTDCELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPPTQELCHGNCVFTRWHYSEWSQCSRSCGGGERSRE SYCMNNFGHRLADNECQELSRVTRENCNEFSCPSWAASEWSECLVTCGKGTKQRQVWCQLNVDHLSDGFCNSSTKPESLSPCELHTCASW QVGPWGPCTTTCGHGYQMRDVKCVNELASAVLEDTECHEASRPSDRQSCVLTPCSFISKLETALLPTVLIKKMAQWRHGSWTPCSVSCGR GTQARYVSCRDALDRIADESYCAHLPRPAEIWDCFTPCGEWQAGDWSPCSASCGHGKTTRQVLCMNYHQPIDENYCDPEVRPLMEQECSL AACPPAHSHFPSSPVQPSYYLSTNLPLTQKLEDNENQVVHPSVRGNQWRTGPWGSCSSSCSGGLQHRAVVCQDENGQSASYCDAASKPPE LQQCGPGPCPQWNYGNWGECSQTCGGGIKSRLVICQFPNGQILEDHNCEIVNKPPSVIQCHMHACPADVSWHQEPWTSCSASCGKGRKYR EVFCIDQFQRKLEDTNCSQVQKPPTHKACRSVRCPSWKANSWNECSVTCGSGVQQRDVYCRLKGVGQVVEEMCDQSTRPCSQRRCWSQDC VQHKGMERGRLNCSTSCERKDSHQRMECTDNQIRQVNEIVYNSSTISLTSKNCRNPPCNYIVVTADSSQCANNCGFSYRQRITYCTEIPS TKKHKLHRLRPIVYQECPVVPSSQVYQCINSCLHLATWKVGKWSKCSVTCGIGIMKRQVKCITKHGLSSDLCLNHLKPGAQKKCYANDCK SFTTCKEIQVKNHIRKDGDYYLNIKGRIIKIYCADMYLENPKEYLTLVQGEENFSEVYGFRLKNPYQCPFNGSRREDCECDNGHLAAGYT -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for ADAMTS20-C12orf43 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ADAMTS20-C12orf43 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ADAMTS20-C12orf43 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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