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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:CYB561-SQSTM1 (FusionGDB2 ID:20903)

Fusion Gene Summary for CYB561-SQSTM1

check button Fusion gene summary
Fusion gene informationFusion gene name: CYB561-SQSTM1
Fusion gene ID: 20903
HgeneTgene
Gene symbol

CYB561

SQSTM1

Gene ID

1534

8878

Gene namecytochrome b561sequestosome 1
SynonymsCYB561A1|FRRS2|ORTHYP2A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B
Cytomap

17q23.3

5q35.3

Type of geneprotein-codingprotein-coding
Descriptioncytochrome b561cytochrome b-561cytochrome b561 family, member A1ferric-chelate reductase 2sequestosome-1EBI3-associated protein of 60 kDaEBI3-associated protein p60EBIAPautophagy receptor p62oxidative stress induced likephosphotyrosine independent ligand for the Lck SH2 domain p62phosphotyrosine-independent ligand for the Lck SH2 domain
Modification date2020031320200327
UniProtAcc.

Q13501

Ensembl transtripts involved in fusion geneENST00000360793, ENST00000392975, 
ENST00000392976, ENST00000584031, 
ENST00000448884, ENST00000542042, 
ENST00000581163, ENST00000581573, 
ENST00000582034, ENST00000582297, 
ENST00000582997, 		ENST00000360718, 
ENST00000389805, ENST00000402874, 
ENST00000506690, ENST00000510187, 
ENST00000376929, 
Fusion gene scores* DoF score13 X 11 X 6=85833 X 21 X 17=11781
# samples 1538
** MAII scorelog2(15/858*10)=-2.51601514700366
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(38/11781*10)=-4.95431877505661
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: CYB561 [Title/Abstract] AND SQSTM1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointCYB561(61509668)-SQSTM1(179250858), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneSQSTM1

GO:0006914

autophagy

20452972

TgeneSQSTM1

GO:0007032

endosome organization

27368102

TgeneSQSTM1

GO:0031397

negative regulation of protein ubiquitination

20452972

TgeneSQSTM1

GO:0061635

regulation of protein complex stability

25127057

TgeneSQSTM1

GO:1905719

protein localization to perinuclear region of cytoplasm

27368102


check buttonFusion gene breakpoints across CYB561 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SQSTM1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-G9-6353-01ACYB561chr17

61509668

-SQSTM1chr5

179250858

+


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Fusion Gene ORF analysis for CYB561-SQSTM1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000360793ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000360793ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000360793ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000360793ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000360793ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392975ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392975ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392975ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392975ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392975ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392976ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392976ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392976ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392976ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000392976ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000584031ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000584031ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000584031ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000584031ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
5CDS-intronENST00000584031ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
Frame-shiftENST00000360793ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
Frame-shiftENST00000392975ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
Frame-shiftENST00000584031ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
In-frameENST00000392976ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000448884ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000542042ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000581163ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000581573ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000582034ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000582297ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-3CDSENST00000582997ENST00000376929CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000448884ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000448884ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000448884ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000448884ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000448884ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000542042ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000542042ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000542042ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000542042ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000542042ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581163ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581163ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581163ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581163ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581163ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581573ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581573ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581573ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581573ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000581573ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582034ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582034ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582034ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582034ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582034ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582297ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582297ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582297ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582297ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582297ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582997ENST00000360718CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582997ENST00000389805CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582997ENST00000402874CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582997ENST00000506690CYB561chr17

61509668

-SQSTM1chr5

179250858

+
intron-intronENST00000582997ENST00000510187CYB561chr17

61509668

-SQSTM1chr5

179250858

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000392976CYB561chr1761509668-ENST00000376929SQSTM1chr5179250858+5655315132104172320

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000392976ENST00000376929CYB561chr1761509668-SQSTM1chr5179250858+0.0219237340.9780763

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Fusion Genomic Features for CYB561-SQSTM1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
CYB561chr1761509667-SQSTM1chr5179250857+0.0012523350.9987476
CYB561chr1761509667-SQSTM1chr5179250857+0.0012523350.9987476

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for CYB561-SQSTM1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:61509668/chr5:179250858)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.SQSTM1

Q13501

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Autophagy receptor required for selective macroautophagy (aggrephagy). Functions as a bridge between polyubiquitinated cargo and autophagosomes. Interacts directly with both the cargo to become degraded and an autophagy modifier of the MAP1 LC3 family (PubMed:16286508, PubMed:20168092, PubMed:24128730, PubMed:28404643, PubMed:22622177). Along with WDFY3, involved in the formation and autophagic degradation of cytoplasmic ubiquitin-containing inclusions (p62 bodies, ALIS/aggresome-like induced structures). Along with WDFY3, required to recruit ubiquitinated proteins to PML bodies in the nucleus (PubMed:24128730, PubMed:20168092). May regulate the activation of NFKB1 by TNF-alpha, nerve growth factor (NGF) and interleukin-1. May play a role in titin/TTN downstream signaling in muscle cells. May regulate signaling cascades through ubiquitination. Adapter that mediates the interaction between TRAF6 and CYLD (By similarity). May be involved in cell differentiation, apoptosis, immune response and regulation of K(+) channels. Involved in endosome organization by retaining vesicles in the perinuclear cloud: following ubiquitination by RNF26, attracts specific vesicle-associated adapters, forming a molecular bridge that restrains cognate vesicles in the perinuclear region and organizes the endosomal pathway for efficient cargo transport (PubMed:27368102). Promotes relocalization of 'Lys-63'-linked ubiquitinated STING1 to autophagosomes (PubMed:29496741). Acts as an activator of the NFE2L2/NRF2 pathway via interaction with KEAP1: interaction inactivates the BCR(KEAP1) complex, promoting nuclear accumulation of NFE2L2/NRF2 and subsequent expression of cytoprotective genes (PubMed:20452972, PubMed:28380357, PubMed:33393215). {ECO:0000250|UniProtKB:O08623, ECO:0000250|UniProtKB:Q64337, ECO:0000269|PubMed:10356400, ECO:0000269|PubMed:10747026, ECO:0000269|PubMed:11244088, ECO:0000269|PubMed:12471037, ECO:0000269|PubMed:15340068, ECO:0000269|PubMed:15802564, ECO:0000269|PubMed:15911346, ECO:0000269|PubMed:15953362, ECO:0000269|PubMed:16079148, ECO:0000269|PubMed:16286508, ECO:0000269|PubMed:19931284, ECO:0000269|PubMed:20168092, ECO:0000269|PubMed:20452972, ECO:0000269|PubMed:22622177, ECO:0000269|PubMed:24128730, ECO:0000269|PubMed:27368102, ECO:0000269|PubMed:28380357, ECO:0000269|PubMed:28404643, ECO:0000269|PubMed:29496741, ECO:0000269|PubMed:33393215}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6619_220951252.0DomainCytochrome b561
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6619_220951252.0DomainCytochrome b561
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6619_220950252.0DomainCytochrome b561
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66116_119951252.0RegionHeme b 1 binding
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66116_119951252.0RegionHeme b 1 binding
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66116_119950252.0RegionHeme b 1 binding
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66107_124951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66146_158951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66180_198951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-661_16951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66220_251951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6638_51951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6673_85951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66107_124951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66146_158951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66180_198951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-661_16951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66220_251951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6638_51951252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6673_85951252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66107_124950252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66146_158950252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66180_198950252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-661_16950252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66220_251950252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6638_51950252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6673_85950252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66125_145951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66159_179951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6617_37951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-66199_219951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6652_72951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000360793-6686_106951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66125_145951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66159_179951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6617_37951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-66199_219951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6652_72951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392975-6686_106951252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66125_145950252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66159_179950252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6617_37950252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-66199_219950252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6652_72950252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000392976-6686_106950252.0TransmembraneHelical
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807272_29416357.0Compositional biasNote=Ser-rich
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929272_29416357.0Compositional biasNote=Ser-rich
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518272_294100441.0Compositional biasNote=Ser-rich
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418272_29416357.0Compositional biasNote=Ser-rich
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807389_43416357.0DomainUBA
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929389_43416357.0DomainUBA
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518389_434100441.0DomainUBA
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418389_43416357.0DomainUBA
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807228_23316357.0MotifNote=TRAF6-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807336_34116357.0MotifNote=LIR
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929228_23316357.0MotifNote=TRAF6-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929336_34116357.0MotifNote=LIR
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518228_233100441.0MotifNote=TRAF6-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518336_341100441.0MotifNote=LIR
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418228_23316357.0MotifNote=TRAF6-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418336_34116357.0MotifNote=LIR
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807170_22016357.0RegionNote=LIM protein-binding (LB)
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807321_34216357.0RegionMAP1LC3B-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929170_22016357.0RegionNote=LIM protein-binding (LB)
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929321_34216357.0RegionMAP1LC3B-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518170_220100441.0RegionNote=LIM protein-binding (LB)
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518321_342100441.0RegionMAP1LC3B-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418170_22016357.0RegionNote=LIM protein-binding (LB)
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418321_34216357.0RegionMAP1LC3B-binding
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807122_16716357.0Zinc fingerZZ-type
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929122_16716357.0Zinc fingerZZ-type
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518122_167100441.0Zinc fingerZZ-type
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418122_16716357.0Zinc fingerZZ-type

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1519_2200252.0DomainCytochrome b561
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15116_1190252.0RegionHeme b 1 binding
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15107_1240252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15146_1580252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15180_1980252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-151_160252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15220_2510252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1538_510252.0Topological domainLumenal
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1573_850252.0Topological domainCytoplasmic
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15125_1450252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15159_1790252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1517_370252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-15199_2190252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1552_720252.0TransmembraneHelical
HgeneCYB561chr17:61509668chr5:179250858ENST00000581573-1586_1060252.0TransmembraneHelical
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000360718073_10216357.0DomainPB1
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000376929293_10216357.0DomainPB1
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000389805183_102100441.0DomainPB1
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000402874183_10216357.0DomainPB1


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Fusion Gene Sequence for CYB561-SQSTM1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>20903_20903_1_CYB561-SQSTM1_CYB561_chr17_61509668_ENST00000392976_SQSTM1_chr5_179250858_ENST00000376929_length(transcript)=5655nt_BP=3151nt
AGGTGAGCCCTGACTGCGCAGGGAGGGACAGCGCGGGGCTCCCGAGTAGCAGCCGGCCTCGCACCTGCCCCTTGCGGCCGCGCACTGGAC
TGCGGCGCCGACCCGCACCCTGGGCCCGAGGGCTGCAGGGCTCGCCCGCCCTCTCGGAGCCGAGCCTCTCCCGGTCCAGGCGGCCCCTGC
CCTGGCCTGCCCGGGTGCCGGGTCTCTGCTGAAGTTAGAACCGAGACCCCCGCTTGCTGGTGACCCCGAGTTTGGATCTTTGCTCCTGCG
CCGCGTTCTAGAGCAAGCGTTTGCCTCAGCATGGAGGGCGGGGCCGCGGCAGCCACCCCCACAGCACTGCCTTACTACGTGGCCTTCTCC
CAGCTGCTGGGCCTGACCTTGGTGGCCATGACCGGCGCGTGGCTCGGGCTGTACCGAGGCGGCATTGCCTGGGAGAGCGACCTGCAGTTC
AACGCGCACCCCCTCTGCATGGTCATAGGCCTGATCTTCCTGCAGGGAAATGCCCTGCTGGTTTACCGTGTCTTCAGGAACGAAGCTAAA
CGCACCACCAAGGTCCTGCACGGGCTGCTGCACATCTTTGCGCTCGTCATCGCCCTGGTTGGCTTGGTGGCGGTGTTCGACTACCACAGG
AAGAAGGGCTACGCTGACCTGTACAGCCTACACAGCTGGTGCGGGATCCTTGTCTTTGTCCTGTACTTTGTGCAGTGGCTGGTGGGCTTC
AGCTTCTTCCTGTTCCCCGGAGCTTCATTCTCCCTGCGGAGCCGCTACCGCCCACAGCACATCTTCTTTGGTGCTACCATCTTCCTCCTT
TCCGTGGGCACCGCCCTGCTGGGCCTGAAGGAGGCACTGCTGTTCAACCTCGGGGGCAAGTATAGCGCATTTGAGCCCGAGGGTGTCCTG
GCCAACGTGCTGGGCCTGCTGCTGGCCTGCTTCGGTGGGGCGGTGCTCTACATCTTGACCCGGGCCGACTGGAAGCGGCCTTCCCAGGCG
GAAGAGCAGGCCCTCTCCATGGACTTCAAGACGCTGACGGAGGGAGATAGCCCCGGCTCCCAGTGATGCGCCCGGCCGGCCCTGGGGGTT
CGCGGGGTGTCTTCTTGCCTGCCCCTGCTGAGGCGTCTTCAGGACTGCAGGCTCCGGAGAGTGGCTCTGGCAGCAGGCGGGCGCGTGGGT
GCAGCTGCATCTGTTTGAGTGCTGCTTTCTGGGGTCAGGTCTCCGCCTCCTCTGCTTCTCCTTTCTCCGCTGCTATAGACCAGTTCATTG
TGTGTGGCTCCCGTGTCTCTGTTGCCCCCTTCAGTGCAGAAGGCTTTGGGTAGGACTTCGGGTGTTCGGTCCTGGTCGCAGAGCACAGAT
CTTTAAAGAAGCGAGAGAGGAGGCCCCACCCTCCTGGCAGCAGATGCCTGGGGCAAGGCCAGGGGAAACTGGGGGGGCCTCAGGGACAGG
CCTGGAAAGGCCACGATGGCTGCTGAATTCAAACAAGGAGTCCCTCCAGCCTGAATAACACGTGGCACAAATGGGCCCGGCCTTTGGCAG
AGGAGCAAGTGATATGATGTGTAAAGTATGTTGGTGGTGAAAGCAAGGTTCCCCAGGAGAGGGGAGGGACTGGCCCCTGGGAAGCTCTGA
GATGAGGCTGTGGCCCAGCTGTAGTCCTGACCTTCCTCTTCTTTAACCCTTTAGCCCTAGGATGGCTTTGGTGGGAGAGGGGATAGAAGC
CCATGACTTCAGACAGACTTTCTCTTGGCAGATGCAGGCGGGCCTCCTCCCAGGCTGCTCCAGACATGGGGGTTGGGGATGGGGGGCACC
TTGCAGCCCCTTCCTGCTGGGGCTCCCTCCTTGTAGCACCCCCCTTGCGGCTCAGCTCTGGTTTCCTCTCCCAGGCTCACCCAGGCTCTG
CTCAGGCTGGGAGGCAGAGGGCACAAACCTTATAATTTTTTAAATGAAAAACCGCTGCTGCTGGCTGTGGCTAGAGCCCCCTGGGGCTGC
TGGAGCTGCTGCCTCTGTTCTGGAGGACGAGCCTTCTCCTTATCTGCTGCCCATCTTTCCAGGAAGTCAGGATGGAGTCAGAACAACTAC
AGTCATCCCCCGTGGTGTCTGCACATCACTCCAGCCCCATAAAGAGTGTCATGTTAGCTGAGTCACCATTTGGCTTCGGCCTGGAAATAG
TGTGATTAGAACACTGATCGTGTGCGAGGCCAGGAGATCAAGACCATCCTGACTAACAAACACAGTGAAACCCCGTCTCTACTAAAAATA
CAAAAAAATTAGCCAGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGATG
GCGCTTGCAGTGAGCTGAGATTGCACTCCAGCCTGGGCGACAGGCTCAAAAAAGAAAAAAAAAAGAACACCGATCATGTGCTTCTTGGAT
CTGGTGACTGTTCTCTCCCTGTTTTCCTTTCTTTTTGGGTGTTTGAGGAGCATGGCTTAGCTTGAGACACACACAGACACTGTGTACTTC
AGTGAAGGGCTTAATATACAGTTTCCAAACCTGACGACTCTTCTTCTTGTAATGGCTGCCCTTTTCCTACCTGAGGCCGTCTTAGAGAAA
GGGGCCAGTCTCCTCTAATGCTCAGATTTCCCATAGTTGGCTTTTGCTGTGTCTCCTGCCTCAGGCAGTGTCATTTCTGGGAGCAGGTGG
TTGTAGTCCAGGCCCCTCCCCAGCAGGGTCTGCCCAGGCTCCTTCGAGCCCCTTTCCCCGCCTCCTCTCAGCCTGTCCGGATGACAGTGT
TCGCCTCCTGTTTAGACTGTACACTCTTCAGGGGTAGGGGTGCCGTCAGTTCTTCAATCAGCTGGCACACACTTGTATAGTGAAATGTTT
ACATGTGGGAAAACTCCGCCTTAGACAAACTACCAAAGTACAATCGTGTCTCTCTCTAGCCGGAATGCTACAGAGAGAAATGGAACCTTA
GATTTGCAACAAAAGTCTGTAAACTGGTCTGTTTGCCAAAGTGAACACTGGATGACTAAGGAGCTGAAGAAGGCCCCCAGAAGCGGATTT
GTGGTGGGTTATTTTATTTTGCCTGTGGCCAATCTTCTGTGAAATACAATGTGCTGTTGGTGCAACAGATGATTCAATAAATGTCTACAG
CAGAAAAAAGAGTGCCGGCGGGACCACCGCCCACCGTGTGCTCAGGAGGCGCCCCGCAACATGGTGCACCCCAATGTGATCTGCGATGGC
TGCAATGGGCCTGTGGTAGGAACCCGCTACAAGTGCAGCGTCTGCCCAGACTACGACTTGTGTAGCGTCTGCGAGGGAAAGGGCTTGCAC
CGGGGGCACACCAAGCTCGCATTCCCCAGCCCCTTCGGGCACCTGTCTGAGGGCTTCTCGCACAGCCGCTGGCTCCGGAAGGTGAAACAC
GGACACTTCGGGTGGCCAGGATGGGAAATGGGTCCACCAGGAAACTGGAGCCCACGTCCTCCTCGTGCAGGGGAGGCCCGCCCTGGCCCC
ACGGCAGAATCAGCTTCTGGTCCATCGGAGGATCCGAGTGTGAATTTCCTGAAGAACGTTGGGGAGAGTGTGGCAGCTGCCCTTAGCCCT
CTGGGCATTGAAGTTGATATCGATGTGGAGCACGGAGGGAAAAGAAGCCGCCTGACCCCCGTCTCTCCAGAGAGTTCCAGCACAGAGGAG
AAGAGCAGCTCACAGCCAAGCAGCTGCTGCTCTGACCCCAGCAAGCCGGGTGGGAATGTTGAGGGCGCCACGCAGTCTCTGGCGGAGCAG
ATGAGGAAGATCGCCTTGGAGTCCGAGGGGCGCCCTGAGGAACAGATGGAGTCGGATAACTGTTCAGGAGGAGATGATGACTGGACCCAT
CTGTCTTCAAAAGAAGTGGACCCGTCTACAGGTGAACTCCAGTCCCTACAGATGCCAGAATCCGAAGGGCCAAGCTCTCTGGACCCCTCC
CAGGAGGGACCCACAGGGCTGAAGGAAGCTGCCTTGTACCCACATCTCCCGCCAGAGGCTGACCCGCGGCTGATTGAGTCCCTCTCCCAG
ATGCTGTCCATGGGCTTCTCTGATGAAGGCGGCTGGCTCACCAGGCTCCTGCAGACCAAGAACTATGACATCGGAGCGGCTCTGGACACC
ATCCAGTATTCAAAGCATCCCCCGCCGTTGTGACCACTTTTGCCCACCTCTTCTGCGTGCCCCTCTTCTGTCTCATAGTTGTGTTAAGCT
TGCGTAGAATTGCAGGTCTCTGTACGGGCCAGTTTCTCTGCCTTCTTCCAGGATCAGGGGTTAGGGTGCAAGAAGCCATTTAGGGCAGCA
AAACAAGTGACATGAAGGGAGGGTCCCTGTGTGTGTGTGTGCTGATGTTTCCTGGGTGCCCTGGCTCCTTGCAGCAGGGCTGGGCCTGCG
AGACCCAAGGCTCACTGCAGCGCGCTCCTGACCCCTCCCTGCAGGGGCTACGTTAGCAGCCCAGCACATAGCTTGCCTAATGGCTTTCAC
TTTCTCTTTTGTTTTAAATGACTCATAGGTCCCTGACATTTAGTTGATTATTTTCTGCTACAGACCTGGTACACTCTGATTTTAGATAAA
GTAAGCCTAGGTGTTGTCAGCAGGCAGGCTGGGGAGGCCAGTGTTGTGGGCTTCCTGCTGGGACTGAGAAGGCTCACGAAGGGCATCCGC
AATGTTGGTTTCACTGAGAGCTGCCTCCTGGTCTCTTCACCACTGTAGTTCTCTCATTTCCAAACCATCAGCTGCTTTTAAAATAAGATC
TCTTTGTAGCCATCCTGTTAAATTTGTAAACAATCTAATTAAATGGCATCAGCACTTTAACCAATGACGTTTGCATAGAGAGAAATGATT
GACAGTAAGTTTATTGTTAATGGTTCTTACAGAGTATCTTTAAAAGTGCCTTAGGGGAACCCTGTCCCTCCTAACAAGTGTATCTCGATT
AATAACCTGCCAGTCCCAGATCACACATCATCATCGAAGTCTTCCCCAGTTATAAAGAGGTCACATAGTCGTGTGGGTCGAGGATTCTGT
GCCTCCAGGACCAGGGGCCCACCCTCTGCCCAGGGAGTCCTTGCGTCCCATGAGGTCTTCCCGCAAGGCCTCTCAGACCCAGATGTGACG
GGGTGTGTGGCCCGAGGAAGCTGGACAGCGGCAGTGGGCCTGCTGAGGCCTTCTCTTGAGGCCTGTGCTCTGGGGGTCCCTTGCTTAGCC
TGTGCTGGACCAGCTGGCCTGGGGTCCCTCTGAAGAGACCTTGGCTGCTCACTGTCCACATGTGAACTTTTTCTAGGTGGCAGGACAAAT
TGCGCCCATTTAGAGGATGTGGCTGTAACCTGCTGGATGGGACTCCATAGCTCCTTCCCAGGACCCCTCAGCTCCCCGGCACTGCAGTCT
GCAGAGTTCTCCTGGAGGCAGGGGCTGCTGCCTTGTTTCACCTTCCATGTCAGGCCAGCCTGTCCCTGAAAGAGAAGATGGCCATGCCCT
CCATGTGTAAGAACAATGCCAGGGCCCAGGAGGACCGCCTGCCCTGCCTGGGCCTTGGCTGGGCCTCTGGTTCTGACACTTTCTGCTGGA

>20903_20903_1_CYB561-SQSTM1_CYB561_chr17_61509668_ENST00000392976_SQSTM1_chr5_179250858_ENST00000376929_length(amino acids)=320AA_BP=
MVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRP
PRAGEARPGPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEEKSSSQPSSCCSDPSKPGGNV
EGATQSLAEQMRKIALESEGRPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEA

--------------------------------------------------------------

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Fusion Gene PPI Analysis for CYB561-SQSTM1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807122_22416.333333333333332357.0GABRR3
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929122_22416.333333333333332357.0GABRR3
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518122_224100.33333333333333441.0GABRR3
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418122_22416.333333333333332357.0GABRR3
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807347_35216.333333333333332357.0KEAP1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929347_35216.333333333333332357.0KEAP1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518347_352100.33333333333333441.0KEAP1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418347_35216.333333333333332357.0KEAP1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000036071807269_44016.333333333333332357.0NTRK1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000037692929269_44016.333333333333332357.0NTRK1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000038980518269_440100.33333333333333441.0NTRK1
TgeneSQSTM1chr17:61509668chr5:179250858ENST0000040287418269_44016.333333333333332357.0NTRK1
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003607180750_8016.333333333333332357.0PAWR
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003769292950_8016.333333333333332357.0PAWR
TgeneSQSTM1chr17:61509668chr5:179250858ENST000004028741850_8016.333333333333332357.0PAWR
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003607180743_10716.333333333333332357.0PRKCZ and dimerization
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003769292943_10716.333333333333332357.0PRKCZ and dimerization
TgeneSQSTM1chr17:61509668chr5:179250858ENST000004028741843_10716.333333333333332357.0PRKCZ and dimerization


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000360718072_5016.333333333333332357.0LCK
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000376929292_5016.333333333333332357.0LCK
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000389805182_50100.33333333333333441.0LCK
TgeneSQSTM1chr17:61509668chr5:179250858ENST00000402874182_5016.333333333333332357.0LCK
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003898051850_80100.33333333333333441.0PAWR
TgeneSQSTM1chr17:61509668chr5:179250858ENST000003898051843_107100.33333333333333441.0PRKCZ and dimerization


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for CYB561-SQSTM1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for CYB561-SQSTM1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource