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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:DCPS-TIRAP (FusionGDB2 ID:21657) |
Fusion Gene Summary for DCPS-TIRAP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DCPS-TIRAP | Fusion gene ID: 21657 | Hgene | Tgene | Gene symbol | DCPS | TIRAP | Gene ID | 28960 | 114609 |
| Gene name | decapping enzyme, scavenger | TIR domain containing adaptor protein | |
| Synonyms | ARS|DCS1|HINT-5|HINT5|HSL1|HSPC015 | BACTS1|Mal|MyD88-2|wyatt | |
| Cytomap | 11q24.2 | 11q24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | m7GpppX diphosphatase5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatasedecapping scavenger enzymeepididymis secretory sperm binding proteinheat shock-like protein 1hint-related 7meGMP-directed hydrolasehistidine triad nucleotide-binding pr | toll/interleukin-1 receptor domain-containing adapter proteinMyD88 adapter-like proteinToll-like receptor adaptor proteinadapter protein wyattadaptor protein Wyatttoll-interleukin 1 receptor (TIR) domain containing adaptor protein | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q96C86 | P58753 | |
| Ensembl transtripts involved in fusion gene | ENST00000263579, ENST00000530860, | ENST00000467006, ENST00000392678, ENST00000392679, ENST00000392680, | |
| Fusion gene scores | * DoF score | 5 X 3 X 3=45 | 2 X 3 X 2=12 |
| # samples | 5 | 2 | |
| ** MAII score | log2(5/45*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/12*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: DCPS [Title/Abstract] AND TIRAP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | DCPS(126176639)-TIRAP(126160357), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | DCPS | GO:0036245 | cellular response to menadione | 16140270 |
| Hgene | DCPS | GO:0043069 | negative regulation of programmed cell death | 16140270 |
| Hgene | DCPS | GO:0045292 | mRNA cis splicing, via spliceosome | 18426921 |
| Tgene | TIRAP | GO:0031334 | positive regulation of protein complex assembly | 12062447 |
| Tgene | TIRAP | GO:0032496 | response to lipopolysaccharide | 11544529 |
| Tgene | TIRAP | GO:0032738 | positive regulation of interleukin-15 production | 18583567 |
| Tgene | TIRAP | GO:0035665 | TIRAP-dependent toll-like receptor 4 signaling pathway | 11544529 |
| Tgene | TIRAP | GO:0070935 | 3'-UTR-mediated mRNA stabilization | 15294994 |
| Fusion gene breakpoints across DCPS (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across TIRAP (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | SKCM | TCGA-ER-A195-06A | DCPS | chr11 | 126176639 | - | TIRAP | chr11 | 126160357 | + |
| ChimerDB4 | SKCM | TCGA-ER-A195-06A | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| ChimerDB4 | SKCM | TCGA-ER-A195-06A | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
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Fusion Gene ORF analysis for DCPS-TIRAP |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-3UTR | ENST00000263579 | ENST00000467006 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| 5CDS-3UTR | ENST00000263579 | ENST00000467006 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392678 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392678 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392679 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392679 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392680 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| 5CDS-5UTR | ENST00000263579 | ENST00000392680 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| intron-3UTR | ENST00000530860 | ENST00000467006 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| intron-3UTR | ENST00000530860 | ENST00000467006 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| intron-5UTR | ENST00000530860 | ENST00000392678 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| intron-5UTR | ENST00000530860 | ENST00000392678 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| intron-5UTR | ENST00000530860 | ENST00000392679 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| intron-5UTR | ENST00000530860 | ENST00000392679 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| intron-5UTR | ENST00000530860 | ENST00000392680 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160357 | + |
| intron-5UTR | ENST00000530860 | ENST00000392680 | DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160698 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for DCPS-TIRAP |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160697 | + | 2.96E-05 | 0.99997044 |
| DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160356 | + | 3.06E-06 | 0.9999969 |
| DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160697 | + | 2.96E-05 | 0.99997044 |
| DCPS | chr11 | 126176639 | + | TIRAP | chr11 | 126160356 | + | 3.06E-06 | 0.9999969 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for DCPS-TIRAP |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:126176639/:126160357) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DCPS | TIRAP |
| FUNCTION: Decapping scavenger enzyme that catalyzes the cleavage of a residual cap structure following the degradation of mRNAs by the 3'->5' exosome-mediated mRNA decay pathway. Hydrolyzes cap analog structures like 7-methylguanosine nucleoside triphosphate (m7GpppG) with up to 10 nucleotide substrates (small capped oligoribonucleotides) and specifically releases 5'-phosphorylated RNA fragments and 7-methylguanosine monophosphate (m7GMP). Cleaves cap analog structures like tri-methyl guanosine nucleoside triphosphate (m3(2,2,7)GpppG) with very poor efficiency. Does not hydrolyze unmethylated cap analog (GpppG) and shows no decapping activity on intact m7GpppG-capped mRNA molecules longer than 25 nucleotides. Does not hydrolyze 7-methylguanosine diphosphate (m7GDP) to m7GMP (PubMed:22985415). May also play a role in the 5'->3 mRNA decay pathway; m7GDP, the downstream product released by the 5'->3' mRNA mediated decapping activity, may be also converted by DCPS to m7GMP (PubMed:14523240). Binds to m7GpppG and strongly to m7GDP. Plays a role in first intron splicing of pre-mRNAs. Inhibits activation-induced cell death. {ECO:0000269|PubMed:11747811, ECO:0000269|PubMed:12198172, ECO:0000269|PubMed:12871939, ECO:0000269|PubMed:14523240, ECO:0000269|PubMed:15273322, ECO:0000269|PubMed:15383679, ECO:0000269|PubMed:15769464, ECO:0000269|PubMed:16140270, ECO:0000269|PubMed:18426921, ECO:0000269|PubMed:22985415}. | FUNCTION: Adapter involved in TLR2 and TLR4 signaling pathways in the innate immune response. Acts via IRAK2 and TRAF-6, leading to the activation of NF-kappa-B, MAPK1, MAPK3 and JNK, and resulting in cytokine secretion and the inflammatory response. Positively regulates the production of TNF-alpha and interleukin-6. {ECO:0000269|PubMed:18292575, ECO:0000269|PubMed:19509286}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for DCPS-TIRAP |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for DCPS-TIRAP |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for DCPS-TIRAP |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for DCPS-TIRAP |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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