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	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:DPP10-TLE2 (FusionGDB2 ID:24006)

Fusion Gene Summary for DPP10-TLE2

Fusion gene summary

Fusion gene information	Fusion gene name: DPP10-TLE2
	Fusion gene ID: 24006
		Hgene	Tgene
	Gene symbol	DPP10	TLE2
	Gene ID	57628	7089
	Gene name	dipeptidyl peptidase like 10	TLE family member 2, transcriptional corepressor
	Synonyms	DPL2\|DPPY\|DPRP-3\|DPRP3	ESG\|ESG2\|GRG2
	Cytomap	2q14.1	19p13.3
	Type of gene	protein-coding	protein-coding
	Description	inactive dipeptidyl peptidase 10DPP Xdipeptidyl peptidase 10dipeptidyl peptidase IV-related protein 3dipeptidyl peptidase Xdipeptidyl peptidase-like protein 2dipeptidyl-peptidase 10 (inactive)dipeptidyl-peptidase 10 (non-functional)	transducin-like enhancer protein 2enhancer of split groucho-like protein 2transducin like enhancer of split 2transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila)transducin-like enhancer of split 2, homolog of Drosophila E(sp1)
	Modification date	20200313	20200313
	UniProtAcc	Q8N608	.
	Ensembl transtripts involved in fusion gene	ENST00000310323, ENST00000393147, ENST00000409163, ENST00000410059, ENST00000488208,	ENST00000262953, ENST00000455444, ENST00000586422, ENST00000591529, ENST00000426948, ENST00000443826, ENST00000447365, ENST00000587217, ENST00000590536,
Fusion gene scores	* DoF score	13 X 13 X 1=169	5 X 6 X 2=60
	# samples	13	6
	** MAII score	log2(13/169*10)=-0.37851162325373 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(6/60*10)=0
Context	PubMed: DPP10 [Title/Abstract] AND TLE2 [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	DPP10(116361262)-TLE2(2997652), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner	Gene	GO ID	GO term	PubMed ID
Hgene	DPP10	GO:1903078	positive regulation of protein localization to plasma membrane	15671030
Tgene	TLE2	GO:0045892	negative regulation of transcription, DNA-templated	19460168
Tgene	TLE2	GO:0090090	negative regulation of canonical Wnt signaling pathway	19460168

Fusion gene breakpoints across DPP10 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across TLE2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	AI810917	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+

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Fusion Gene ORF analysis for DPP10-TLE2

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
intron-3UTR	ENST00000310323	ENST00000262953	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000310323	ENST00000455444	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000310323	ENST00000586422	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000310323	ENST00000591529	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000393147	ENST00000262953	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000393147	ENST00000455444	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000393147	ENST00000586422	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000393147	ENST00000591529	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000409163	ENST00000262953	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000409163	ENST00000455444	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000409163	ENST00000586422	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000409163	ENST00000591529	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000410059	ENST00000262953	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000410059	ENST00000455444	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000410059	ENST00000586422	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000410059	ENST00000591529	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000488208	ENST00000262953	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000488208	ENST00000455444	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000488208	ENST00000586422	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-3UTR	ENST00000488208	ENST00000591529	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000310323	ENST00000426948	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000310323	ENST00000443826	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000310323	ENST00000447365	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000310323	ENST00000587217	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000310323	ENST00000590536	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000393147	ENST00000426948	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000393147	ENST00000443826	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000393147	ENST00000447365	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000393147	ENST00000587217	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000393147	ENST00000590536	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000409163	ENST00000426948	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000409163	ENST00000443826	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000409163	ENST00000447365	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000409163	ENST00000587217	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000409163	ENST00000590536	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000410059	ENST00000426948	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000410059	ENST00000443826	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000410059	ENST00000447365	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000410059	ENST00000587217	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000410059	ENST00000590536	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000488208	ENST00000426948	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000488208	ENST00000443826	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000488208	ENST00000447365	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000488208	ENST00000587217	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+
intron-intron	ENST00000488208	ENST00000590536	DPP10	chr2	116361262	+	TLE2	chr19	2997652	+

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

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Fusion Genomic Features for DPP10-TLE2

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for DPP10-TLE2

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:116361262/:2997652)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
DPP10 Q8N608	.
FUNCTION: Promotes cell surface expression of the potassium channel KCND2 (PubMed:15454437). Modulates the activity and gating characteristics of the potassium channel KCND2 (PubMed:15454437). Has no dipeptidyl aminopeptidase activity (PubMed:12662155). {ECO:0000269\|PubMed:12662155, ECO:0000269\|PubMed:15454437, ECO:0000269\|PubMed:15671030}.	FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

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Fusion Gene Sequence for DPP10-TLE2

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for DPP10-TLE2

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

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Related Drugs for DPP10-TLE2

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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Related Diseases for DPP10-TLE2

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source