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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:EEF2-SMARCA4 (FusionGDB2 ID:25260)

Fusion Gene Summary for EEF2-SMARCA4

check button Fusion gene summary
Fusion gene informationFusion gene name: EEF2-SMARCA4
Fusion gene ID: 25260
HgeneTgene
Gene symbol

EEF2

SMARCA4

Gene ID

1938

6597

Gene nameeukaryotic translation elongation factor 2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
SynonymsEEF-2|EF-2|EF2|SCA26BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2-beta|SNF2L4|SNF2LB|SWI2|hSNF2b
Cytomap

19p13.3

19p13.2

Type of geneprotein-codingprotein-coding
Descriptionelongation factor 2epididymis secretory sperm binding proteinpolypeptidyl-tRNA translocasetranscription activator BRG1ATP-dependent helicase SMARCA4BRG1-associated factor 190ABRM/SWI2-related gene 1SNF2-like 4brahma protein-like 1global transcription activator homologous sequencehomeotic gene regulatormitotic growth and transcription a
Modification date2020031320200315
UniProtAcc

P13639

.
Ensembl transtripts involved in fusion geneENST00000309311, ENST00000600720, 
ENST00000538456, ENST00000344626, 
ENST00000358026, ENST00000413806, 
ENST00000429416, ENST00000444061, 
ENST00000450717, ENST00000541122, 
ENST00000589677, ENST00000590574, 
Fusion gene scores* DoF score44 X 37 X 16=2604820 X 28 X 15=8400
# samples 5632
** MAII scorelog2(56/26048*10)=-5.53960196732128
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(32/8400*10)=-4.71424551766612
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: EEF2 [Title/Abstract] AND SMARCA4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointEEF2(3982805)-SMARCA4(11151983), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneSMARCA4

GO:0006337

nucleosome disassembly

8895581

TgeneSMARCA4

GO:0006338

chromatin remodeling

10943845|11726552

TgeneSMARCA4

GO:0045892

negative regulation of transcription, DNA-templated

12065415

TgeneSMARCA4

GO:0045944

positive regulation of transcription by RNA polymerase II

15774904|17938176

TgeneSMARCA4

GO:0051091

positive regulation of DNA-binding transcription factor activity

11950834|17938176

TgeneSMARCA4

GO:1902661

positive regulation of glucose mediated signaling pathway

22368283


check buttonFusion gene breakpoints across EEF2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SMARCA4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4Non-CancerTCGA-K1-A3PO-11AEEF2chr19

3982805

-SMARCA4chr19

11151983

+


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Fusion Gene ORF analysis for EEF2-SMARCA4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000309311ENST00000538456EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000344626EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000358026EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000413806EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000429416EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000444061EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000450717EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000541122EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000589677EEF2chr19

3982805

-SMARCA4chr19

11151983

+
In-frameENST00000309311ENST00000590574EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000344626EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000358026EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000413806EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000429416EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000444061EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000450717EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000541122EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000589677EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3CDSENST00000600720ENST00000590574EEF2chr19

3982805

-SMARCA4chr19

11151983

+
intron-3UTRENST00000600720ENST00000538456EEF2chr19

3982805

-SMARCA4chr19

11151983

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000309311EEF2chr193982805-ENST00000358026SMARCA4chr1911151983+1941701891474461
ENST00000309311EEF2chr193982805-ENST00000344626SMARCA4chr1911151983+1718701891474461
ENST00000309311EEF2chr193982805-ENST00000429416SMARCA4chr1911151983+1941701891474461
ENST00000309311EEF2chr193982805-ENST00000541122SMARCA4chr1911151983+14747014781473332
ENST00000309311EEF2chr193982805-ENST00000589677SMARCA4chr1911151983+14717014781470331
ENST00000309311EEF2chr193982805-ENST00000444061SMARCA4chr1911151983+1472701891471461
ENST00000309311EEF2chr193982805-ENST00000590574SMARCA4chr1911151983+1475701891474462
ENST00000309311EEF2chr193982805-ENST00000413806SMARCA4chr1911151983+19407014781473331
ENST00000309311EEF2chr193982805-ENST00000450717SMARCA4chr1911151983+19377014781470330

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000309311ENST00000358026EEF2chr193982805-SMARCA4chr1911151983+0.0043411850.9956589
ENST00000309311ENST00000344626EEF2chr193982805-SMARCA4chr1911151983+0.0050868620.9949131
ENST00000309311ENST00000429416EEF2chr193982805-SMARCA4chr1911151983+0.0043411850.9956589
ENST00000309311ENST00000541122EEF2chr193982805-SMARCA4chr1911151983+0.0144194580.9855805
ENST00000309311ENST00000589677EEF2chr193982805-SMARCA4chr1911151983+0.0160319280.983968
ENST00000309311ENST00000444061EEF2chr193982805-SMARCA4chr1911151983+0.0040272610.9959727
ENST00000309311ENST00000590574EEF2chr193982805-SMARCA4chr1911151983+0.0037268990.99627316
ENST00000309311ENST00000413806EEF2chr193982805-SMARCA4chr1911151983+0.0258279850.97417206
ENST00000309311ENST00000450717EEF2chr193982805-SMARCA4chr1911151983+0.0275610650.9724389

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Fusion Genomic Features for EEF2-SMARCA4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
EEF2chr193982804-SMARCA4chr1911151982+7.10E-070.9999993
EEF2chr193982804-SMARCA4chr1911151982+7.10E-070.9999993

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for EEF2-SMARCA4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:3982805/chr19:11151983)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
EEF2

P13639

.
FUNCTION: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneEEF2chr19:3982805chr19:11151983ENST00000309311-415104_108204859.0Nucleotide bindingGTP
HgeneEEF2chr19:3982805chr19:11151983ENST00000309311-415158_161204859.0Nucleotide bindingGTP
HgeneEEF2chr19:3982805chr19:11151983ENST00000309311-41526_33204859.0Nucleotide bindingGTP
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000034462628351571_158413901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004138060331360_136401618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004138060331571_158401618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033578_58801618.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033663_67201618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000042941629361571_158413901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000044406128351360_136413571614.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000044406128351571_158413571614.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004507170331360_136401617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004507170331571_158401617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033578_58801617.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033663_67201617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005411220351360_136401618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005411220351571_158401618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035578_58801618.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035663_67201618.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005896770351360_136401617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005896770351571_158401617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035578_58801617.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035663_67201617.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000059057427341360_136413571615.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000059057427341571_158413571615.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000034462628351477_154713901648.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004138060331084_124601618.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004138060331477_154701618.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033171_20601618.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033460_53201618.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033766_93101618.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000042941629361477_154713901648.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000044406128351477_154713571614.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004507170331084_124601617.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004507170331477_154701617.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033171_20601617.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033460_53201617.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033766_93101617.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005411220351084_124601618.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005411220351477_154701618.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035171_20601618.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035460_53201618.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035766_93101618.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005896770351084_124601617.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005896770351477_154701617.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035171_20601617.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035460_53201617.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035766_93101617.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000059057427341477_154713571615.0DomainBromo
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033881_88401618.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033881_88401617.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035881_88401618.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035881_88401617.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033779_78601618.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033779_78601617.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035779_78601618.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035779_78601617.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000413806033462_72801618.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000450717033462_72801617.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000541122035462_72801618.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST00000589677035462_72801617.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneEEF2chr19:3982805chr19:11151983ENST00000309311-41517_362204859.0Domaintr-type G
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000034462628351360_136413901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835578_58813901648.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835663_67213901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000042941629361360_136413901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936578_58813901648.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936663_67213901648.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835578_58813571614.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835663_67213571614.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734578_58813571615.0Compositional biasNote=Poly-Lys
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734663_67213571615.0Compositional biasNote=Poly-Glu
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000034462628351084_124613901648.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835171_20613901648.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835460_53213901648.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835766_93113901648.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000042941629361084_124613901648.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936171_20613901648.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936460_53213901648.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936766_93113901648.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000044406128351084_124613571614.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835171_20613571614.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835460_53213571614.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835766_93113571614.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST0000059057427341084_124613571615.0DomainHelicase C-terminal
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734171_20613571615.0DomainQLQ
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734460_53213571615.0DomainHSA
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734766_93113571615.0DomainHelicase ATP-binding
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835881_88413901648.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936881_88413901648.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835881_88413571614.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734881_88413571615.0MotifNote=DEGH box
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835779_78613901648.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936779_78613901648.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835779_78613571614.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734779_78613571615.0Nucleotide bindingATP
TgeneSMARCA4chr19:3982805chr19:11151983ENST000003446262835462_72813901648.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004294162936462_72813901648.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST000004440612835462_72813571614.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2
TgeneSMARCA4chr19:3982805chr19:11151983ENST000005905742734462_72813571615.0RegionRNA-binding region which is sufficient for binding to lncRNA Evf2


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Fusion Gene Sequence for EEF2-SMARCA4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>25260_25260_1_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000344626_length(transcript)=1718nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGGCCATCGAGGAGGGCACGC
TGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCA
GCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCA
ACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCC
AGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACC
ACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCT
ATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGG
AGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGG
ACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGG
AGGACCGCTCAGGAAGTGGCAGCGAAGAAGACTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTTCCAGAGCTGAGATGGCAT
AGGCCTTAGCAGTAACGGGTAGCAGCAGATGTAGTTTCAGACTTGGAGTAAAACTGTATAAACAAAAGAATCTTCCATATTTATACAGCA
GAGAAGCTGTAGGACTGTTTGTGACTGGCCCTGTCCTGGCATCAGTAGCATCTGTAACAGCATTAACTGTCTTAAAGAGAGAGAGAGAGA

>25260_25260_1_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000344626_length(amino acids)=461AA_BP=204
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFYELSENDLNFIK
QSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP
NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI
YEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQE

--------------------------------------------------------------
>25260_25260_2_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000358026_length(transcript)=1941nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGGCCATCGAGGAGGGCACGC
TGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCA
GCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCA
ACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCC
AGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACC
ACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCT
ATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGG
AGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGG
ACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGG
AGGACCGCTCAGGAAGTGGCAGCGAAGAAGACTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTTCCAGAGCTGAGATGGCAT
AGGCCTTAGCAGTAACGGGTAGCAGCAGATGTAGTTTCAGACTTGGAGTAAAACTGTATAAACAAAAGAATCTTCCATATTTATACAGCA
GAGAAGCTGTAGGACTGTTTGTGACTGGCCCTGTCCTGGCATCAGTAGCATCTGTAACAGCATTAACTGTCTTAAAGAGAGAGAGAGAGA
ATTCCGAATTGGGGAACACACGATACCTGTTTTTCTTTTCCGTTGCTGGCAGTACTGTTGCGCCGCAGTTTGGAGTCACTGTAGTTAAGT
GTGGATGCATGTGCGTCACCGTCCACTCCTCCTACTGTATTTTATTGGACAGGTCAGACTCGCCGGGGGCCCGGCGAGGGTATGTCAGTG

>25260_25260_2_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000358026_length(amino acids)=461AA_BP=204
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFYELSENDLNFIK
QSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP
NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI
YEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQE

--------------------------------------------------------------
>25260_25260_3_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000413806_length(transcript)=1940nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGCCATCGAGGAGGGCACGCT
GGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAG
CACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAA
CCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCA
GCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCA
CAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTA
TGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGA
GGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGA
CCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGA
GGACCGCTCAGGAAGTGGCAGCGAAGAAGACTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTTCCAGAGCTGAGATGGCATA
GGCCTTAGCAGTAACGGGTAGCAGCAGATGTAGTTTCAGACTTGGAGTAAAACTGTATAAACAAAAGAATCTTCCATATTTATACAGCAG
AGAAGCTGTAGGACTGTTTGTGACTGGCCCTGTCCTGGCATCAGTAGCATCTGTAACAGCATTAACTGTCTTAAAGAGAGAGAGAGAGAA
TTCCGAATTGGGGAACACACGATACCTGTTTTTCTTTTCCGTTGCTGGCAGTACTGTTGCGCCGCAGTTTGGAGTCACTGTAGTTAAGTG
TGGATGCATGTGCGTCACCGTCCACTCCTCCTACTGTATTTTATTGGACAGGTCAGACTCGCCGGGGGCCCGGCGAGGGTATGTCAGTGT

>25260_25260_3_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000413806_length(amino acids)=331AA_BP=74
MRVRRVRADGDSAAAGHCRAHQACADDEQDGPRPAGAAAGARGALPDFPAHRGERERHHLHLRRGRERPHGQHHAIEEGTLEEIEEEVRQ
KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE
YYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGS

--------------------------------------------------------------
>25260_25260_4_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000429416_length(transcript)=1941nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGGCCATCGAGGAGGGCACGC
TGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCA
GCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCA
ACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCC
AGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACC
ACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCT
ATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGG
AGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGG
ACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGG
AGGACCGCTCAGGAAGTGGCAGCGAAGAAGACTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTTCCAGAGCTGAGATGGCAT
AGGCCTTAGCAGTAACGGGTAGCAGCAGATGTAGTTTCAGACTTGGAGTAAAACTGTATAAACAAAAGAATCTTCCATATTTATACAGCA
GAGAAGCTGTAGGACTGTTTGTGACTGGCCCTGTCCTGGCATCAGTAGCATCTGTAACAGCATTAACTGTCTTAAAGAGAGAGAGAGAGA
ATTCCGAATTGGGGAACACACGATACCTGTTTTTCTTTTCCGTTGCTGGCAGTACTGTTGCGCCGCAGTTTGGAGTCACTGTAGTTAAGT
GTGGATGCATGTGCGTCACCGTCCACTCCTCCTACTGTATTTTATTGGACAGGTCAGACTCGCCGGGGGCCCGGCGAGGGTATGTCAGTG

>25260_25260_4_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000429416_length(amino acids)=461AA_BP=204
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFYELSENDLNFIK
QSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP
NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI
YEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQE

--------------------------------------------------------------
>25260_25260_5_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000444061_length(transcript)=1472nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGGCCATCGAGGAGGGCACGC
TGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCA
GCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCA
ACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGC
TGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCACA
AGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTATG
AAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGG
AGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACC
GGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAGG

>25260_25260_5_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000444061_length(amino acids)=461AA_BP=204
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFYELSENDLNFIK
QSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP
NLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY
EDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEE

--------------------------------------------------------------
>25260_25260_6_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000450717_length(transcript)=1937nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGCCATCGAGGAGGGCACGCT
GGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAG
CACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAA
CCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCT
GCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCACAA
GTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTATGA
AGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGA
GGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACCG
GCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAGGA
CCGCTCAGGAAGTGGCAGCGAAGAAGACTGAGCCCCGACATTCCAGTCTCGACCCCGAGCCCCTCGTTCCAGAGCTGAGATGGCATAGGC
CTTAGCAGTAACGGGTAGCAGCAGATGTAGTTTCAGACTTGGAGTAAAACTGTATAAACAAAAGAATCTTCCATATTTATACAGCAGAGA
AGCTGTAGGACTGTTTGTGACTGGCCCTGTCCTGGCATCAGTAGCATCTGTAACAGCATTAACTGTCTTAAAGAGAGAGAGAGAGAATTC
CGAATTGGGGAACACACGATACCTGTTTTTCTTTTCCGTTGCTGGCAGTACTGTTGCGCCGCAGTTTGGAGTCACTGTAGTTAAGTGTGG
ATGCATGTGCGTCACCGTCCACTCCTCCTACTGTATTTTATTGGACAGGTCAGACTCGCCGGGGGCCCGGCGAGGGTATGTCAGTGTCAC

>25260_25260_6_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000450717_length(amino acids)=330AA_BP=74
MRVRRVRADGDSAAAGHCRAHQACADDEQDGPRPAGAAAGARGALPDFPAHRGERERHHLHLRRGRERPHGQHHAIEEGTLEEIEEEVRQ
KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSE

--------------------------------------------------------------
>25260_25260_7_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000541122_length(transcript)=1474nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGCCATCGAGGAGGGCACGCT
GGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAG
CACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAA
CCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCA
GCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCA
CAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTA
TGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGA
GGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGA
CCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGA

>25260_25260_7_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000541122_length(amino acids)=332AA_BP=74
MRVRRVRADGDSAAAGHCRAHQACADDEQDGPRPAGAAAGARGALPDFPAHRGERERHHLHLRRGRERPHGQHHAIEEGTLEEIEEEVRQ
KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPE
YYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGS

--------------------------------------------------------------
>25260_25260_8_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000589677_length(transcript)=1471nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGCCATCGAGGAGGGCACGCT
GGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAG
CACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAA
CCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCT
GCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCACAA
GTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTATGA
AGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGA
GGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACCG
GCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAGGA

>25260_25260_8_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000589677_length(amino acids)=331AA_BP=74
MRVRRVRADGDSAAAGHCRAHQACADDEQDGPRPAGAAAGARGALPDFPAHRGERERHHLHLRRGRERPHGQHHAIEEGTLEEIEEEVRQ
KKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSE

--------------------------------------------------------------
>25260_25260_9_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000590574_length(transcript)=1475nt_BP=701nt
AGCGTTCTCTTCCGCCGTCGTCGCCGCCATCCTCGGCGCGACTCGCTTCTTTCGGTTCTACCTGGGAGAATCCACCGCCATCCGCCACCA
TGGTGAACTTCACGGTAGACCAGATCCGCGCCATCATGGACAAGAAGGCCAACATCCGCAACATGTCTGTCATCGCCCACGTGGACCATG
GCAAGTCCACGCTGACAGACTCCCTGGTGTGCAAGGCGGGCATCATCGCCTCGGCCCGGGCCGGGGAGACACGCTTCACTGATACCCGGA
AGGACGAGCAGGAGCGTTGCATCACCATCAAGTCAACTGCCATCTCCCTCTTCTACGAGCTCTCGGAGAATGACTTGAACTTCATCAAGC
AGAGCAAGGACGGTGCCGGCTTCCTCATCAACCTCATTGACTCCCCCGGGCATGTCGACTTCTCCTCGGAGGTGACTGCTGCCCTCCGAG
TCACCGATGGCGCATTGGTGGTGGTGGACTGCGTGTCAGGCGTGTGCGTGCAGACGGAGACAGTGCTGCGGCAGGCCATTGCCGAGCGCA
TCAAGCCTGTGCTGATGATGAACAAGATGGACCGCGCCCTGCTGGAGCTGCAGCTGGAGCCCGAGGAGCTCTACCAGACTTTCCAGCGCA
TCGTGGAGAACGTGAACGTCATCATCTCCACCTACGGCGAGGGCGAGAGCGGCCCCATGGGCAACATCATGGCCATCGAGGAGGGCACGC
TGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCA
GCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCA
ACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAGCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCC
AGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACC
ACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCT
ATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGG
AGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGG
ACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGG

>25260_25260_9_EEF2-SMARCA4_EEF2_chr19_3982805_ENST00000309311_SMARCA4_chr19_11151983_ENST00000590574_length(amino acids)=462AA_BP=204
MVNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAISLFYELSENDLNFIK
QSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQR
IVENVNVIISTYGEGESGPMGNIMAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP
NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI
YEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQE

--------------------------------------------------------------

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Fusion Gene PPI Analysis for EEF2-SMARCA4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for EEF2-SMARCA4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for EEF2-SMARCA4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource