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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:EIF4G3-PPP2R3A (FusionGDB2 ID:26058)

Fusion Gene Summary for EIF4G3-PPP2R3A

check button Fusion gene summary
Fusion gene informationFusion gene name: EIF4G3-PPP2R3A
Fusion gene ID: 26058
HgeneTgene
Gene symbol

EIF4G3

PPP2R3A

Gene ID

8672

5523

Gene nameeukaryotic translation initiation factor 4 gamma 3protein phosphatase 2 regulatory subunit B''alpha
SynonymseIF-4G 3|eIF4G 3|eIF4GIIPPP2R3|PR130|PR72
Cytomap

1p36.12

3q22.2-q22.3

Type of geneprotein-codingprotein-coding
Descriptioneukaryotic translation initiation factor 4 gamma 3eIF-4-gamma 3eIF-4-gamma IIserine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alphaPP2A subunit B isoforms B72/B130PP2A, subunit B, R3 isoformPR130/B''alpha1 subunitPR72/B''alpha2 subuitprotein phosphatase 2 (formerly 2A), regulatory subunit B'' (PR 72), al
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000400422, ENST00000602326, 
ENST00000264211, ENST00000356916, 
ENST00000374927, ENST00000374933, 
ENST00000374935, ENST00000374937, 
ENST00000536266, ENST00000537738, 
ENST00000544689, 
ENST00000264977, 
ENST00000334546, ENST00000490467, 
ENST00000469270, ENST00000492624, 
Fusion gene scores* DoF score22 X 20 X 11=48408 X 6 X 5=240
# samples 329
** MAII scorelog2(32/4840*10)=-3.91886323727459
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/240*10)=-1.41503749927884
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: EIF4G3 [Title/Abstract] AND PPP2R3A [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointEIF4G3(21503215)-PPP2R3A(135806725), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across EIF4G3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PPP2R3A (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-E2-A158-01AEIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
ChimerDB4BRCATCGA-E2-A158EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+


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Fusion Gene ORF analysis for EIF4G3-PPP2R3A

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000400422ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000400422ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-3CDSENST00000400422ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000400422ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-3CDSENST00000400422ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000400422ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-3CDSENST00000602326ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000602326ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-3CDSENST00000602326ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000602326ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-3CDSENST00000602326ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-3CDSENST00000602326ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-intronENST00000400422ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-intronENST00000400422ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-intronENST00000400422ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-intronENST00000400422ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-intronENST00000602326ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-intronENST00000602326ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
5UTR-intronENST00000602326ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
5UTR-intronENST00000602326ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000264211ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000264211ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000264211ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000264211ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000264211ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000264211ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000356916ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000356916ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000356916ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000356916ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000356916ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000356916ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374927ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374927ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374927ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374927ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374927ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374927ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374933ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374933ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374933ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374933ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374933ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374933ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374935ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374935ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374935ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374935ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374935ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374935ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374937ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374937ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374937ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374937ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000374937ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000374937ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000536266ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000536266ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000536266ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000536266ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000536266ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000536266ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000537738ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000537738ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000537738ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000537738ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000537738ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000537738ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000544689ENST00000264977EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000544689ENST00000264977EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000544689ENST00000334546EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000544689ENST00000334546EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-3CDSENST00000544689ENST00000490467EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-3CDSENST00000544689ENST00000490467EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000264211ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000264211ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000264211ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000264211ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000356916ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000356916ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000356916ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000356916ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374927ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374927ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374927ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374927ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374933ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374933ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374933ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374933ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374935ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374935ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374935ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374935ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374937ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374937ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000374937ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000374937ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000536266ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000536266ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000536266ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000536266ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000537738ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000537738ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000537738ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000537738ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000544689ENST00000469270EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000544689ENST00000469270EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+
intron-intronENST00000544689ENST00000492624EIF4G3chr1

21503215

-PPP2R3Achr3

135806725

+
intron-intronENST00000544689ENST00000492624EIF4G3chr1

21503214

-PPP2R3Achr3

135806724

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for EIF4G3-PPP2R3A


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
EIF4G3chr121503214-PPP2R3Achr3135806724+4.06E-081
EIF4G3chr121503214-PPP2R3Achr3135806724+4.06E-081
EIF4G3chr121503214-PPP2R3Achr3135806724+4.06E-081
EIF4G3chr121503214-PPP2R3Achr3135806724+4.06E-081

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for EIF4G3-PPP2R3A


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:21503215/:135806725)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for EIF4G3-PPP2R3A


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for EIF4G3-PPP2R3A


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for EIF4G3-PPP2R3A


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for EIF4G3-PPP2R3A


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource