FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:ENTPD1-RPL13 (FusionGDB2 ID:26690)

Fusion Gene Summary for ENTPD1-RPL13

check button Fusion gene summary
Fusion gene informationFusion gene name: ENTPD1-RPL13
Fusion gene ID: 26690
HgeneTgene
Gene symbol

ENTPD1

RPL13

Gene ID

953

28998

Gene nameectonucleoside triphosphate diphosphohydrolase 1mitochondrial ribosomal protein L13
SynonymsATPDase|CD39|NTPDase-1|SPG64L13|L13A|L13mt|RPL13|RPML13
Cytomap

10q24.1

8q24.12

Type of geneprotein-codingprotein-coding
Descriptionectonucleoside triphosphate diphosphohydrolase 1CD39 antigenecto-ATP diphosphohydrolase 1ecto-ATPDase 1ecto-ATPase 1ecto-apyraselymphoid cell activation antigen39S ribosomal protein L13, mitochondrialMRP-L13mitochondrial large ribosomal subunit protein uL13m
Modification date2020031520200313
UniProtAcc

P49961

.
Ensembl transtripts involved in fusion geneENST00000371203, ENST00000371205, 
ENST00000371207, ENST00000453258, 
ENST00000490659, ENST00000539125, 
ENST00000543964, 		ENST00000393099, 
ENST00000311528, ENST00000452368, 
ENST00000567815, 
Fusion gene scores* DoF score8 X 7 X 3=1688 X 8 X 3=192
# samples 88
** MAII scorelog2(8/168*10)=-1.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(8/192*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ENTPD1 [Title/Abstract] AND RPL13 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointENTPD1(97485346)-RPL13(89627137), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across ENTPD1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across RPL13 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABE796741ENTPD1chr10

97485346

+RPL13chr16

89627137

+


Top

Fusion Gene ORF analysis for ENTPD1-RPL13

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-5UTRENST00000371203ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000371205ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000371207ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000453258ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000490659ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000539125ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-5UTRENST00000543964ENST00000393099ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371203ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371203ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371203ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371205ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371205ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371205ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371207ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371207ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000371207ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000453258ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000453258ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000453258ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000490659ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000490659ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000490659ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000539125ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000539125ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000539125ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000543964ENST00000311528ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000543964ENST00000452368ENTPD1chr10

97485346

+RPL13chr16

89627137

+
intron-intronENST00000543964ENST00000567815ENTPD1chr10

97485346

+RPL13chr16

89627137

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for ENTPD1-RPL13


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for ENTPD1-RPL13


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:97485346/:89627137)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ENTPD1

P49961

.
FUNCTION: In the nervous system, could hydrolyze ATP and other nucleotides to regulate purinergic neurotransmission. Could also be implicated in the prevention of platelet aggregation by hydrolyzing platelet-activating ADP to AMP. Hydrolyzes ATP and ADP equally well. {ECO:0000269|PubMed:8955160}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

Fusion Gene Sequence for ENTPD1-RPL13


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for ENTPD1-RPL13


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for ENTPD1-RPL13


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for ENTPD1-RPL13


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource