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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:AGAP3-CUX1 (FusionGDB2 ID:2817)

Fusion Gene Summary for AGAP3-CUX1

check button Fusion gene summary
Fusion gene informationFusion gene name: AGAP3-CUX1
Fusion gene ID: 2817
HgeneTgene
Gene symbol

AGAP3

CUX1

Gene ID

116988

1523

Gene nameArfGAP with GTPase domain, ankyrin repeat and PH domain 3cut like homeobox 1
SynonymsAGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75
Cytomap

7q36.1

7q22.1

Type of geneprotein-codingprotein-coding
Descriptionarf-GAP with GTPase, ANK repeat and PH domain-containing protein 3CRAM-associated GTPaseCRMP (collapsin response mediator protein) associatedMR1-interacting proteincentaurin-gamma-3protein CASPHomeobox protein cut-like 1CCAAT displacement proteinCUX1 gene Alternatively Spliced Productcut homologgolgi integral membrane protein 6homeobox protein cux-1putative protein product of Nbla10317
Modification date2020031320200320
UniProtAcc

Q96P47

P39880

Ensembl transtripts involved in fusion geneENST00000397238, ENST00000473312, 
ENST00000479901, ENST00000335367, 
ENST00000463381, ENST00000476375, 
ENST00000560541, ENST00000292535, 
ENST00000360264, ENST00000425244, 
ENST00000546411, ENST00000549414, 
ENST00000550008, ENST00000556210, 
ENST00000292538, ENST00000393824, 
ENST00000437600, ENST00000547394, 
Fusion gene scores* DoF score15 X 6 X 10=90026 X 23 X 9=5382
# samples 1429
** MAII scorelog2(14/900*10)=-2.68449817427207
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(29/5382*10)=-4.21401758562548
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: AGAP3 [Title/Abstract] AND CUX1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointAGAP3(150784159)-CUX1(101916637), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across AGAP3 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across CUX1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4Non-CancerERR315466AGAP3chr7

150784159

+CUX1chr7

101916637

+


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Fusion Gene ORF analysis for AGAP3-CUX1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000397238ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-3UTRENST00000473312ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-3UTRENST00000479901ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000397238ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000473312ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
5CDS-intronENST00000479901ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000397238ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000397238ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000397238ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000397238ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000473312ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000473312ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000473312ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000473312ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000479901ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000479901ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000479901ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
In-frameENST00000479901ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000335367ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000335367ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000335367ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000335367ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000463381ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000463381ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000463381ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000463381ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000476375ENST00000292538AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000476375ENST00000393824AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000476375ENST00000437600AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3CDSENST00000476375ENST00000547394AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3UTRENST00000335367ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3UTRENST00000463381ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-3UTRENST00000476375ENST00000560541AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000335367ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000463381ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000292535AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000360264AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000425244AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000546411AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000549414AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000550008AGAP3chr7

150784159

+CUX1chr7

101916637

+
intron-intronENST00000476375ENST00000556210AGAP3chr7

150784159

+CUX1chr7

101916637

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000473312AGAP3chr7150784159+ENST00000437600CUX1chr7101916637+198033101112370
ENST00000473312AGAP3chr7150784159+ENST00000292538CUX1chr7101916637+198033101112370
ENST00000473312AGAP3chr7150784159+ENST00000393824CUX1chr7101916637+150133101112370
ENST00000473312AGAP3chr7150784159+ENST00000547394CUX1chr7101916637+198033101112370
ENST00000479901AGAP3chr7150784159+ENST00000437600CUX1chr7101916637+198033101112370
ENST00000479901AGAP3chr7150784159+ENST00000292538CUX1chr7101916637+198033101112370
ENST00000479901AGAP3chr7150784159+ENST00000393824CUX1chr7101916637+150133101112370
ENST00000479901AGAP3chr7150784159+ENST00000547394CUX1chr7101916637+198033101112370
ENST00000397238AGAP3chr7150784159+ENST00000437600CUX1chr7101916637+198033101112370
ENST00000397238AGAP3chr7150784159+ENST00000292538CUX1chr7101916637+198033101112370
ENST00000397238AGAP3chr7150784159+ENST00000393824CUX1chr7101916637+150133101112370
ENST00000397238AGAP3chr7150784159+ENST00000547394CUX1chr7101916637+198033101112370

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000473312ENST00000437600AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000473312ENST00000292538AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000473312ENST00000393824AGAP3chr7150784159+CUX1chr7101916637+0.0189080010.981092
ENST00000473312ENST00000547394AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000479901ENST00000437600AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000479901ENST00000292538AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000479901ENST00000393824AGAP3chr7150784159+CUX1chr7101916637+0.0189080010.981092
ENST00000479901ENST00000547394AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000397238ENST00000437600AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000397238ENST00000292538AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537
ENST00000397238ENST00000393824AGAP3chr7150784159+CUX1chr7101916637+0.0189080010.981092
ENST00000397238ENST00000547394AGAP3chr7150784159+CUX1chr7101916637+0.0208845960.97911537

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Fusion Genomic Features for AGAP3-CUX1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
AGAP3chr7150784159+CUX1chr7101916636+5.24E-121
AGAP3chr7150784159+CUX1chr7101916636+5.24E-121

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for AGAP3-CUX1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr7:150784159/chr7:101916637)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
AGAP3

Q96P47

CUX1

P39880

FUNCTION: GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway. {ECO:0000269|PubMed:16461359, ECO:0000305}.FUNCTION: Transcription factor involved in the control of neuronal differentiation in the brain. Regulates dendrite development and branching, and dendritic spine formation in cortical layers II-III. Also involved in the control of synaptogenesis. In addition, it has probably a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer. Binds to the TH enhancer; may require the basic helix-loop-helix protein TCF4 as a coactivator. {ECO:0000250|UniProtKB:P53564}.; FUNCTION: [CDP/Cux p110]: Plays a role in cell cycle progression, in particular at the G1/S transition. As cells progress into S phase, a fraction of CUX1 molecules is proteolytically processed into N-terminally truncated proteins of 110 kDa. While CUX1 only transiently binds to DNA and carries the CCAAT-displacement activity, CDP/Cux p110 makes a stable interaction with DNA and stimulates expression of genes such as POLA1. {ECO:0000269|PubMed:15099520}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+11898_105110912.0Nucleotide bindingGTP
TgeneCUX1chr7:150784159chr7:101916637ENST0000029253502456_40701506.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST000002925381323502_556418679.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000036026402456_40701517.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST000003938241222502_556379640.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST000004376001323502_556416677.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000054641102456_40701404.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST000005473941222502_556402663.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000054941402356_40701484.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000055000802256_40701450.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000055621002256_40701348.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST000002925350241406_143801506.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000003602640241406_143801517.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST0000042524412221406_1438372633.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000005464110241406_143801404.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000005494140231406_143801484.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000005500080221406_143801450.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000005562100221406_143801348.0Compositional biasNote=Ala-rich
TgeneCUX1chr7:150784159chr7:101916637ENST000002925350241117_120401506.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000002925350241244_130301506.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000292535024542_62901506.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000292535024934_102101506.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000003602640241117_120401517.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000003602640241244_130301517.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000360264024542_62901517.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000360264024934_102101517.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST0000042524412221117_1204372633.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST0000042524412221244_1303372633.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST000004252441222542_629372633.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST000004252441222934_1021372633.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000005464110241117_120401404.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000005464110241244_130301404.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000546411024542_62901404.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000546411024934_102101404.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000005494140231117_120401484.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000005494140231244_130301484.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000549414023542_62901484.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000549414023934_102101484.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000005500080221117_120401450.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000005500080221244_130301450.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000550008022542_62901450.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000550008022934_102101450.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000005562100221117_120401348.0DNA bindingCUT 3
TgeneCUX1chr7:150784159chr7:101916637ENST000005562100221244_130301348.0DNA bindingHomeobox
TgeneCUX1chr7:150784159chr7:101916637ENST00000556210022542_62901348.0DNA bindingCUT 1
TgeneCUX1chr7:150784159chr7:101916637ENST00000556210022934_102101348.0DNA bindingCUT 2
TgeneCUX1chr7:150784159chr7:101916637ENST000002925381323641_678418679.0Topological domainLumenal
TgeneCUX1chr7:150784159chr7:101916637ENST000003938241222641_678379640.0Topological domainLumenal
TgeneCUX1chr7:150784159chr7:101916637ENST000004376001323641_678416677.0Topological domainLumenal
TgeneCUX1chr7:150784159chr7:101916637ENST000005473941222641_678402663.0Topological domainLumenal
TgeneCUX1chr7:150784159chr7:101916637ENST000002925381323620_640418679.0TransmembraneHelical%3B Anchor for type IV membrane protein
TgeneCUX1chr7:150784159chr7:101916637ENST000003938241222620_640379640.0TransmembraneHelical%3B Anchor for type IV membrane protein
TgeneCUX1chr7:150784159chr7:101916637ENST000004376001323620_640416677.0TransmembraneHelical%3B Anchor for type IV membrane protein
TgeneCUX1chr7:150784159chr7:101916637ENST000005473941222620_640402663.0TransmembraneHelical%3B Anchor for type IV membrane protein

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118367_605110912.0DomainPH
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118626_746110912.0DomainArf-GAP
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118142_146110912.0Nucleotide bindingGTP
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118198_201110912.0Nucleotide bindingGTP
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+11884_375110912.0RegionNote=Small GTPase-like
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118748_777110912.0RepeatNote=ANK 1
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118785_814110912.0RepeatNote=ANK 2
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118818_847110912.0RepeatNote=ANK 3
HgeneAGAP3chr7:150784159chr7:101916637ENST00000397238+118641_664110912.0Zinc fingerC4-type
TgeneCUX1chr7:150784159chr7:101916637ENST00000292538132367_450418679.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST00000393824122267_450379640.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST00000425244122256_407372633.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST00000437600132367_450416677.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST00000547394122267_450402663.0Coiled coilOntology_term=ECO:0000255
TgeneCUX1chr7:150784159chr7:101916637ENST0000029253813231_619418679.0Topological domainCytoplasmic
TgeneCUX1chr7:150784159chr7:101916637ENST0000039382412221_619379640.0Topological domainCytoplasmic
TgeneCUX1chr7:150784159chr7:101916637ENST0000043760013231_619416677.0Topological domainCytoplasmic
TgeneCUX1chr7:150784159chr7:101916637ENST0000054739412221_619402663.0Topological domainCytoplasmic


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Fusion Gene Sequence for AGAP3-CUX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>2817_2817_1_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000292538_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_1_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000292538_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_2_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000393824_length(transcript)=1501nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT

>2817_2817_2_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000393824_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_3_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000437600_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_3_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000437600_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_4_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000547394_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_4_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000397238_CUX1_chr7_101916637_ENST00000547394_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_5_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000292538_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_5_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000292538_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_6_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000393824_length(transcript)=1501nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT

>2817_2817_6_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000393824_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_7_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000437600_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_7_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000437600_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_8_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000547394_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_8_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000473312_CUX1_chr7_101916637_ENST00000547394_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_9_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000292538_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_9_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000292538_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_10_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000393824_length(transcript)=1501nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT

>2817_2817_10_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000393824_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_11_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000437600_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_11_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000437600_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

--------------------------------------------------------------
>2817_2817_12_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000547394_length(transcript)=1980nt_BP=331nt
ATGAACTTCCAGGCGGGCGGGGGGCAGAGCCCGCAGCAGCAGCAGAGCCTGGCGGCTCCGGGGGGCGGCGGCGCTGCCGCGCAGCAGCTC
GTCTGCGGCGGGCAGTTCGGCGGCGCGGGGCCCGGGGCCGGGGGCGGCGGCGGCCCCTCGCAGCAGCTGGCCGGCGGGCCCCCCCAGCAG
TTCGCGCTCTCCAACTCCGCGGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCCGTGCATCCCAATATCTACGCCATCTACGACCTGATC
GAGCGCATCGAGGATTTGGCGCTGCAGAACCAGATCCGGGAGCACGTCATCTCCATCGAGGGACGCTGTGCAGAGCTGCAAGTCCGTATC
ACTGAGGCTGTGGCCACAGCCACTGAGCAGAGAGAGCTGATCGCCCGCCTGGAGCAGGACCTGAGCATCATTCAGTCCATCCAGCGGCCC
GATGCCGAGGGTGCCGCTGAGCACCGCCTGGAGAAGATCCCAGAGCCCATCAAAGAGGCCACTGCCCTATTCTACGGACCTGCAGCACCA
GCCAGCGGTGCCCTCCCAGAGGGCCAGGTGGATTCACTGCTTTCCATCATCTCCAGCCAGAGGGAGCGCTTCCGTGCCCGGAACCAGGAG
CTTGAGGCCGAGAACCGCCTGGCCCAGCACACCCTCCAGGCCCTGCAGAGTGAGCTGGACAGCCTGCGCGCCGACAACATCAAGCTCTTT
GAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCAGCGGCAGTGATGACACGGAGCTGCGGTACTCGTCCCAGTACGAGGAGCGC
CTGGACCCCTTCTCCTCCTTCAGCAAGCGGGAGCGGCAGAGGAAGTACCTGAGCTTGAGTCCCTGGGACAAGGCCACCCTCAGCATGGGG
CGTCTGGTTCTCTCCAACAAGATGGCGCGCACCATCGGCTTCTTCTACACACTGTTCCTGCACTGCCTGGTCTTCCTGGTGCTCTACAAG
CTGGCATGGAGCGAGAGCATGGAGAGGGACTGTGCCACCTTCTGCGCCAAGAAGTTCGCTGACCACCTGCACAAGTTCCACGAGAATGAC
AACGGGGCTGCGGCTGGTGACTTGTGGCAGTGATACCCCGGGGCCTCCCCCGTGACAGTGACGGCTGCGCCTCCACCCCGACTGCTCAGT
GCATCTAATCACTTAGACTCCCCTGAAGAATCCCCCATGGAAACTGCCCTTATCCGCTGTCCAGCAGCTGCCAGAGGCCCCAGGTCACCT
CGGGTCCCCTTGAAAGAATGTCTCGGTCACATCAGGCCCGCTAGGTCCAGAGAGCGAGCCCCCAATGCCCGGCCAGGCTAAGCCGCAGAG
ACCCTCTCAGCCCCCACCTCAGGTTAGGGCTCTGCCCGCAGCCTGACCTCTAGCCCTGGTGGCAGAGGTCCCTCAGCTGCGAGGCTAATT
GGGTGACCACCGATTCCAGCTGCGGTTAATCCAGCTTGGGCCTGTCTGCACTGCGATCCTCTTGGGCTCTCCTAGGATCCCCCCATGCCC
CGTAAGAGGTGGAAGACGCTTCCTTCCAGGACAGCAGGCTTTGAGTCCAGCACCCCCAGCCTGCCTTTGCCACCAGCCCCACCCTGCAGA
GTATATGAGGCTTGACAGAGTCTGCCCCCTCCCCCACTGCACCCCAAGAGAGAGAGCCCCAGCCAGCGGAACAGTTTCTATTACCCCCTC
CCTGCCCCCAGACCCATGTGATTTCTGCTTTCTTCTTTAGCAAGATATTCTGGTTTCTAGATAAGGAAGAGTCTCTAATGAGCCCCCGAG
CCCCAGTCTCTTCAGACTCATGGATTGGTCTGAGGGGTCTGAACGTCTCCTAGCCAATCAGAACTGGCTGTGGACCACCCTAGCACGGCC
ACCTCTCAGGGCCACTGGCAGGCCTTCCTGAGTTAGATTTGTAGTTGCATATTTAGCTTTGCACATTTGAAATAAACCACGGTTGCAGCC

>2817_2817_12_AGAP3-CUX1_AGAP3_chr7_150784159_ENST00000479901_CUX1_chr7_101916637_ENST00000547394_length(amino acids)=370AA_BP=110
MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLI
ERIEDLALQNQIREHVISIEGRCAELQVRITEAVATATEQRELIARLEQDLSIIQSIQRPDAEGAAEHRLEKIPEPIKEATALFYGPAAP
ASGALPEGQVDSLLSIISSQRERFRARNQELEAENRLAQHTLQALQSELDSLRADNIKLFEKIKFLQSYPGRGSGSDDTELRYSSQYEER
LDPFSSFSKRERQRKYLSLSPWDKATLSMGRLVLSNKMARTIGFFYTLFLHCLVFLVLYKLAWSESMERDCATFCAKKFADHLHKFHEND

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Fusion Gene PPI Analysis for AGAP3-CUX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for AGAP3-CUX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for AGAP3-CUX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource