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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FAM131B-GIPC1 (FusionGDB2 ID:28486)

Fusion Gene Summary for FAM131B-GIPC1

check button Fusion gene summary
Fusion gene informationFusion gene name: FAM131B-GIPC1
Fusion gene ID: 28486
HgeneTgene
Gene symbol

FAM131B

GIPC1

Gene ID

9715

10755

Gene namefamily with sequence similarity 131 member BGIPC PDZ domain containing family member 1
Synonyms-C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2
Cytomap

7q34

19p13.12

Type of geneprotein-codingprotein-coding
Descriptionprotein FAM131BPDZ domain-containing protein GIPC1GAIP C-terminus-interacting proteinGLUT1 C-terminal binding proteinIGF-1 receptor interacting protein 1RGS-GAIP-interacting proteinRGS19-interacting protein 1regulator of G-protein signalling 19 interacting protein
Modification date2020031320200313
UniProtAcc

Q86XD5

O14908

Ensembl transtripts involved in fusion geneENST00000409222, ENST00000409346, 
ENST00000409408, ENST00000409578, 
ENST00000443739, 
ENST00000393029, 
ENST00000393033, ENST00000586027, 
ENST00000591349, ENST00000345425, 
ENST00000393028, 
Fusion gene scores* DoF score2 X 5 X 2=208 X 8 X 7=448
# samples 49
** MAII scorelog2(4/20*10)=1
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(9/448*10)=-2.31550182572793
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FAM131B [Title/Abstract] AND GIPC1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFAM131B(143059853)-GIPC1(14603727), # samples:5
FAM131B(143059852)-GIPC1(14603726), # samples:5
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across FAM131B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across GIPC1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-IC-A6RFFAM131Bchr7

143059853

-GIPC1chr19

14603727

-
ChimerDB4ESCATCGA-JY-A6FHFAM131Bchr7

143059852

-GIPC1chr19

14603726

-
ChimerDB4ESCATCGA-L5-A88ZFAM131Bchr7

143059853

-GIPC1chr19

14602558

-
ChimerDB4ESCATCGA-L5-A88ZFAM131Bchr7

143059853

-GIPC1chr19

14603727

-
ChimerDB4ESCATCGA-LN-A8HZFAM131Bchr7

143059852

-GIPC1chr19

14603726

-
ChimerDB4ESCATCGA-R6-A6XGFAM131Bchr7

143059853

-GIPC1chr19

14603727

-
ChimerDB4ESCATCGA-V5-A7RBFAM131Bchr7

143059852

-GIPC1chr19

14603726

-
ChimerDB4ESCATCGA-VR-A8EQFAM131Bchr7

143059852

-GIPC1chr19

14603726

-
ChimerDB4OVTCGA-09-0367-01AFAM131Bchr7

143059853

-GIPC1chr19

14603727

-
ChimerDB4OVTCGA-13-0724-01AFAM131Bchr7

143059852

-GIPC1chr19

14603726

-
ChimerDB4OVTCGA-61-1918-01AFAM131Bchr7

143059853

-GIPC1chr19

14603727

-


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Fusion Gene ORF analysis for FAM131B-GIPC1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-5UTRENST00000409222ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409222ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409222ENST00000393029FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409222ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409222ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409222ENST00000393033FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409222ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409222ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409346ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409346ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409346ENST00000393029FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409346ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409346ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409346ENST00000393033FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409346ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409346ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409408ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409408ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409408ENST00000393029FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409408ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409408ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409408ENST00000393033FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409408ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409408ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409578ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409578ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409578ENST00000393029FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409578ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000409578ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409578ENST00000393033FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000409578ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000409578ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000443739ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000443739ENST00000393029FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000443739ENST00000393029FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000443739ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-5UTRENST00000443739ENST00000393033FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000443739ENST00000393033FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-5UTRENST00000443739ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-5UTRENST00000443739ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409222ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409222ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409222ENST00000345425FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409222ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409222ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409222ENST00000393028FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409222ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409222ENST00000586027FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409222ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409222ENST00000591349FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409346ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409346ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409346ENST00000345425FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409346ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409346ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409346ENST00000393028FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409346ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409346ENST00000586027FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409346ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409346ENST00000591349FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409408ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409408ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409408ENST00000345425FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409408ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409408ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409408ENST00000393028FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409408ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409408ENST00000586027FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409408ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409408ENST00000591349FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409578ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409578ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409578ENST00000345425FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409578ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409578ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000409578ENST00000393028FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409578ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409578ENST00000586027FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000409578ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000409578ENST00000591349FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000443739ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000443739ENST00000345425FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000443739ENST00000345425FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000443739ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000443739ENST00000393028FAM131Bchr7

143059853

-GIPC1chr19

14602558

-
intron-intronENST00000443739ENST00000393028FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000443739ENST00000586027FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000443739ENST00000586027FAM131Bchr7

143059852

-GIPC1chr19

14603726

-
intron-intronENST00000443739ENST00000591349FAM131Bchr7

143059853

-GIPC1chr19

14603727

-
intron-intronENST00000443739ENST00000591349FAM131Bchr7

143059852

-GIPC1chr19

14603726

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for FAM131B-GIPC1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for FAM131B-GIPC1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:143059853/:14603727)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FAM131B

Q86XD5

GIPC1

O14908

FUNCTION: May be involved in G protein-linked signaling.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for FAM131B-GIPC1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for FAM131B-GIPC1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FAM131B-GIPC1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for FAM131B-GIPC1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource