Home

Download

Statistics

Examples

Help

Contact

	Fusion Gene Summary
	Fusion Gene ORF analysis
	Fusion Genomic Features
	Fusion Protein Features
	Fusion Gene Sequence
	Fusion Gene PPI analysis
	Related Drugs
	Related Diseases

Fusion gene:FAM135A-MAP3K7CL (FusionGDB2 ID:28523)

Fusion Gene Summary for FAM135A-MAP3K7CL

Fusion gene summary

Fusion gene information	Fusion gene name: FAM135A-MAP3K7CL
	Fusion gene ID: 28523
		Hgene	Tgene
	Gene symbol	FAM135A	MAP3K7CL
	Gene ID	57579	56911
	Gene name	family with sequence similarity 135 member A	MAP3K7 C-terminal like
	Synonyms	KIAA1411	C21orf7\|HC21ORF7\|TAK1L\|TAKL\|TAKL-1\|TAKL-2\|TAKL-4
	Cytomap	6q13	21q21.3
	Type of gene	protein-coding	protein-coding
	Description	protein FAM135A	MAP3K7 C-terminal-like proteinTAK1-like protein 1TAK1-like protein 2TAK1-like protein 4TGF-beta activated kinase
	Modification date	20200313	20200320
	UniProtAcc	Q9P2D6	P57077
	Ensembl transtripts involved in fusion gene	ENST00000361499, ENST00000370479, ENST00000418814, ENST00000457062, ENST00000505769, ENST00000505868, ENST00000508844,	ENST00000286791, ENST00000339024, ENST00000341618, ENST00000399925, ENST00000399926, ENST00000399928, ENST00000399934, ENST00000399935, ENST00000399947, ENST00000496779, ENST00000545939,
Fusion gene scores	* DoF score	15 X 12 X 10=1800	4 X 6 X 3=72
	# samples	16	4
	** MAII score	log2(16/1800*10)=-3.49185309632968 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0	log2(4/72*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0
Context	PubMed: FAM135A [Title/Abstract] AND MAP3K7CL [Title/Abstract] AND fusion [Title/Abstract]
Most frequent breakpoint	FAM135A(71256868)-MAP3K7CL(30530926), # samples:1
Anticipated loss of major functional domain due to fusion event.

* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Partner

Gene

GO ID

GO term

PubMed ID

Fusion gene breakpoints across FAM135A (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene breakpoints across MAP3K7CL (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

Source	Disease	Sample	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
ChiTaRS5.0	N/A	EF580481	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-

Top

Fusion Gene ORF analysis for FAM135A-MAP3K7CL

Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.

ORF	Henst	Tenst	Hgene	Hchr	Hbp	Hstrand	Tgene	Tchr	Tbp	Tstrand
intron-intron	ENST00000361499	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000361499	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000370479	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000418814	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000457062	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505769	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000505868	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000286791	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000339024	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000341618	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399925	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399926	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399928	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399934	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399935	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000399947	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000496779	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-
intron-intron	ENST00000508844	ENST00000545939	FAM135A	chr6	71256868	+	MAP3K7CL	chr21	30530926	-

ORFfinder result based on the fusion transcript sequence of in-frame fusion genes.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

Seq length
(transcript)

BP loci
(transcript)

Predicted start
(transcript)

Predicted stop
(transcript)

Seq length
(amino acids)

DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.

Henst

Tenst

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

No-coding score

Coding score

Top

Fusion Genomic Features for FAM135A-MAP3K7CL

FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.

Hgene

Hchr

Hbp

Hstrand

Tgene

Tchr

Tbp

Tstrand

1-p

p (fusion gene breakpoint)

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for FAM135A-MAP3K7CL

Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:71256868/:30530926)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.

Main function of each fusion partner protein. (from UniProt)

Hgene	Tgene
FAM135A Q9P2D6	MAP3K7CL P57077

Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at
download page

* Minus value of BPloci means that the break pointn is located before the CDS.

- In-frame and retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

- In-frame and not-retained protein feature among the 13 regional features.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Protein feature

Protein feature note

Top

Fusion Gene Sequence for FAM135A-MAP3K7CL

For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

Top

Fusion Gene PPI Analysis for FAM135A-MAP3K7CL

Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in
ChiPPI page.

Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)

Hgene

Hgene's interactors

Tgene

Tgene's interactors

- Retained PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Still interaction with

- Lost PPIs in in-frame fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

- Retained PPIs, but lost function due to frame-shift fusion.

Partner

Gene

Hbp

Tbp

ENST

Strand

BPexon

TotalExon

Protein feature loci

*BPloci

TotalLen

Interaction lost with

Top

Related Drugs for FAM135A-MAP3K7CL

Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)

Partner

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

Related Diseases for FAM135A-MAP3K7CL

Diseases associated with fusion partners.
(DisGeNet 4.0)

Partner

Gene

Disease ID

Disease name

# pubmeds

Source