FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

Fusion Gene Summary

leaf

Fusion Gene ORF analysis

leaf

Fusion Genomic Features

leaf

Fusion Protein Features

leaf

Fusion Gene Sequence

leaf

Fusion Gene PPI analysis

leaf

Related Drugs

leaf

Related Diseases

Fusion gene:FAM19A2-TMBIM4 (FusionGDB2 ID:28827)

Fusion Gene Summary for FAM19A2-TMBIM4

check button Fusion gene summary
Fusion gene informationFusion gene name: FAM19A2-TMBIM4
Fusion gene ID: 28827
HgeneTgene
Gene symbol

FAM19A2

TMBIM4

Gene ID

338811

51643

Gene nameTAFA chemokine like family member 2transmembrane BAX inhibitor motif containing 4
SynonymsFAM19A2|TAFA-2CGI-119|GAAP|LFG4|S1R|ZPRO
Cytomap

12q14.1

12q14.3

Type of geneprotein-codingprotein-coding
Descriptionchemokine-like protein TAFA-2family with sequence similarity 19 (chemokine (C-C motif)-like), member A2family with sequence similarity 19 member A2, C-C motif chemokine likeprotein FAM19A2protein lifeguard 4Golgi anti-apoptotic proteinZ-proteintransmembrane BAX inhibitor motif-containing protein 4
Modification date2020031320200313
UniProtAcc..
Ensembl transtripts involved in fusion geneENST00000416284, ENST00000550003, 
ENST00000551619, ENST00000549456, 
ENST00000551449, 
ENST00000286424, 
ENST00000398033, ENST00000544599, 
ENST00000535812, ENST00000542724, 
ENST00000358230, ENST00000539652, 
ENST00000556010, 
Fusion gene scores* DoF score9 X 6 X 7=3789 X 5 X 6=270
# samples 99
** MAII scorelog2(9/378*10)=-2.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/270*10)=-1.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FAM19A2 [Title/Abstract] AND TMBIM4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFAM19A2(62147403)-TMBIM4(66547228), # samples:4
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneTMBIM4

GO:0050848

regulation of calcium-mediated signaling

19553469


check buttonFusion gene breakpoints across FAM19A2 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across TMBIM4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SARCTCGA-DX-A2IZ-01AFAM19A2chr12

62147403

-TMBIM4chr12

66547228

-


Top

Fusion Gene ORF analysis for FAM19A2-TMBIM4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000416284ENST00000286424FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000416284ENST00000398033FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000416284ENST00000544599FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000550003ENST00000286424FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000550003ENST00000398033FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000550003ENST00000544599FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000551619ENST00000286424FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000551619ENST00000398033FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-5UTRENST00000551619ENST00000544599FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000416284ENST00000535812FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000416284ENST00000542724FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000550003ENST00000535812FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000550003ENST00000542724FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000551619ENST00000535812FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
5CDS-intronENST00000551619ENST00000542724FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
Frame-shiftENST00000416284ENST00000358230FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
Frame-shiftENST00000550003ENST00000358230FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
Frame-shiftENST00000551619ENST00000539652FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
Frame-shiftENST00000551619ENST00000556010FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
In-frameENST00000416284ENST00000539652FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
In-frameENST00000416284ENST00000556010FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
In-frameENST00000550003ENST00000539652FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
In-frameENST00000550003ENST00000556010FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
In-frameENST00000551619ENST00000358230FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000549456ENST00000358230FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000549456ENST00000539652FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000549456ENST00000556010FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000551449ENST00000358230FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000551449ENST00000539652FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-3CDSENST00000551449ENST00000556010FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000549456ENST00000286424FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000549456ENST00000398033FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000549456ENST00000544599FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000551449ENST00000286424FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000551449ENST00000398033FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-5UTRENST00000551449ENST00000544599FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-intronENST00000549456ENST00000535812FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-intronENST00000549456ENST00000542724FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-intronENST00000551449ENST00000535812FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-
intron-intronENST00000551449ENST00000542724FAM19A2chr12

62147403

-TMBIM4chr12

66547228

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000416284FAM19A2chr1262147403-ENST00000539652TMBIM4chr1266547228-282219691227319302
ENST00000416284FAM19A2chr1262147403-ENST00000556010TMBIM4chr1266547228-281019691227319302
ENST00000551619FAM19A2chr1262147403-ENST00000358230TMBIM4chr1266547228-33085745791193204
ENST00000550003FAM19A2chr1262147403-ENST00000539652TMBIM4chr1266547228-1211358363767134
ENST00000550003FAM19A2chr1262147403-ENST00000556010TMBIM4chr1266547228-1199358363767134

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000416284ENST00000539652FAM19A2chr1262147403-TMBIM4chr1266547228-0.142200860.8577991
ENST00000416284ENST00000556010FAM19A2chr1262147403-TMBIM4chr1266547228-0.142365780.85763425
ENST00000551619ENST00000358230FAM19A2chr1262147403-TMBIM4chr1266547228-0.102370170.8976298
ENST00000550003ENST00000539652FAM19A2chr1262147403-TMBIM4chr1266547228-0.56471120.43528882
ENST00000550003ENST00000556010FAM19A2chr1262147403-TMBIM4chr1266547228-0.572262470.42773756

Top

Fusion Genomic Features for FAM19A2-TMBIM4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for FAM19A2-TMBIM4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr12:62147403/chr12:66547228)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
..
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007209_22932239.0IntramembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007119_12032239.0Topological domainLumenal
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007142_15132239.0Topological domainCytoplasmic
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007173_17532239.0Topological domainLumenal
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007197_20832239.0Topological domainCytoplasmic
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007230_23832239.0Topological domainCytoplasmic
TgeneTMBIM4chr12:62147403chr12:66547228ENST000003582300760_6832239.0Topological domainLumenal
TgeneTMBIM4chr12:62147403chr12:66547228ENST000003582300790_9732239.0Topological domainCytoplasmic
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007121_14132239.0TransmembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007152_17232239.0TransmembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST0000035823007176_19632239.0TransmembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST000003582300739_5932239.0TransmembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST000003582300769_8932239.0TransmembraneHelical
TgeneTMBIM4chr12:62147403chr12:66547228ENST000003582300798_11832239.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneTMBIM4chr12:62147403chr12:66547228ENST00000358230071_3832239.0Topological domainCytoplasmic


Top

Fusion Gene Sequence for FAM19A2-TMBIM4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>28827_28827_1_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000416284_TMBIM4_chr12_66547228_ENST00000539652_length(transcript)=2822nt_BP=1969nt
TTTTATACCAGTTGCCTCCTCATCTTTTACTGTCTCGTTCTTTTTCTGCAGGACCGTTGTTTGCTCTCAACGGCAGTTGCTGGGGCTAAC
AGAACTGGCTGTTGGGAGAGAGAGGCGAGGCAACGCCGCCCGGCCCTGCCATTCCATTTTACTGCTTAACTCAACCTGGAGTGTCAGGAC
CTATTCTCCTGCATTCTCGCTGCACTATACGGGGGAGCCAAGTCACTCTGTACTCACTGGACAGCCAGGCTGGGTGGAATAGGGTTCTAG
AGTGGAGCAGGGGCTCTGCCCTTTATGGCGACTTTCTAAAAGATTAGCATCAGTGTCTTTTGACAGTATAGCATCTGGGGTGGGACGCGG
AGAGGAGGCTTTGCTTGCTAAACGGCTTCTTTCTCCGCCGGTGATCTGGATTTGTTTCCTCGGCCCCCTCCCCCCGCTCCTTTCTTTCTC
CCCTCCCGCCTTTAGCAAAGTGACACAGGCGACACCTGCTCGCTTGTGTTCGATGTTGGAACTCGCACCTCCTCGGTGGTGACGGTGCCA
GGGCACTGCTACCAGGGGGACATCGGCGGGTTTCCCTTCCTTCCAGCCCACGATGCCTAGAAGGGCAGCGGGTGGGCTGCGTGGGGCTCT
GCCCGCAGCACTTCGAGGCGGGATTGAGGGGCTGAAGCTGGCCAGGAGTTGCTGCTAAGTGGATTCGAGTGGAAGGCGCCAAGTCTCCGC
GAGGGCACCAGCGGGGACCTATCTGCGAGCAGTGGGAACAGGGGCACCTGGACGGAGGAACGCGGGCGTCTGGAGGGGGGACATCGGCTG
AGCTCAGAGCCTCTCCTCCTTCCTGTCCCGAGCTTCCCAGCAACTCCGCCACGTTGGAGACCCGGTACCTGCGAGAGCCAGGGAACTCGA
GAAGTGCGTGGCCGAGGCTGCTTTCCTGAAGGTGAATCATTCTGTCCAATTGCCTTTCCCCAGAGAACAAGAGGGAGGGCGGGAGAGAGG
GAACGGAGGATGTGTGAGTGTGTGTGTGTGTGAGAGGGAGAGACGACGTGAGGCGAGAGGAAAAGTCTTTAGTCGGCCTTAAAAGCAAAC
AAATCAGAGATGGAATAAGAGCGGTAATTGCAGCAAGACCGCCTTGATTCTTGCAGTCCAGGGAGCTGAGCGCACCGCGCGCATCCGGCG
AGGACAGGAGGCGACCGCGGGCGCTGCCAAGGGCTGCGGGACTTTGGCTTTTCCTCAGTAAACAAATCTTTTGATTACTTTGACACTGTG
GAATAAAGAAGCGGGGAGAAGGATCAGGCTCACCTTCACCCGCTTCAGGGGGATTCCAGCTTGGATGTCAGATTCCTGAACCGTCTTTGC
CATCGGAGGAGGAAACACATCCACACACGCGCGCGCACACTCGCACGCTCAGGGCCACACTCACACGCCGCCCTCCACGATCACACAGCA
CCAGACTTCGGTTCCCTATGCCCCTGGATGGTGACGGCGGATTGGCATCTTGGAAGCGATGCGAGAGCGATAAGGCTGGCGCCGGCCCGC
AAAAGCTGCAGGAGCATCGCTAGGTGTTGCCGCCACCGGGAAGCGGGGCTGCAGGATGAGTAAGAGATACTTACAGAAAGCAACAAAAGG
AAAACTGCTAATAATAATATTTATTGTAACCTTGTGGGGGAAAGTTGTATCCAGTGCAAACCATCATAAAGCTCACCATGTTAAAACGGG
AACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTGCTTCCCTGG
GCAGGTGGCAGGCACCACGCGAGCTGCTCCATCATGTGTGGATGCTTCAATAGTGGAACAGAAATGGTGGTGCCATATGCAGCCATGTCT
AGAGGGAGAAGAATGTAAAGTTCTTCCGGATCGGAAAGGATGGAGCTGTTCCTCTGGGAATAAAGTCAAAACAACTAGGCCTTTCTGAGA
AAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTA
CATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGTATCCCCTT
AACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATTATTCTGCAA
GCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCAGGCCGC
TGCAGGAGCCCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTGATGCATAAACTGTCACCTGAAGAGTACGTATTAGCTGC
CATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTTCTGGAAGCAGTTAATAAAAAGTAAAACATGGCTAAAAG
CTTACGGAGTAAGTGGAAAAGAAAGATGCGTGCTGAAAAGAGAAAAAAGAATGCCCCAAAGGAGGCCAGCAGGCTTAAAAGTATTCTCAA
ACTAGACGGTGATGTTTTAATGAAAGATGTTCAAGAGATAGCAACTGTGGTGGTACCCAAACCCAAACATTGCCAAGAGAAAATGCAATG
TGAGGTAAAAGATGAAAAAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCC

>28827_28827_1_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000416284_TMBIM4_chr12_66547228_ENST00000539652_length(amino acids)=302AA_BP=
MRKSQSPAALGSARGRLLSSPDARGALSSLDCKNQGGLAAITALIPSLICLLLRPTKDFSSRLTSSLPLTHTHTHTSSVPSLPPSLLFSG
ERQLDRMIHLQESSLGHALLEFPGSRRYRVSNVAELLGSSGQEGGEALSSADVPPPDARVPPSRCPCSHCSQIGPRWCPRGDLAPSTRIH
LAATPGQLQPLNPASKCCGQSPTQPTRCPSRHRGLEGRETRRCPPGSSALAPSPPRRCEFQHRTQASRCRLCHFAKGGRGERKERGEGAE

--------------------------------------------------------------
>28827_28827_2_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000416284_TMBIM4_chr12_66547228_ENST00000556010_length(transcript)=2810nt_BP=1969nt
TTTTATACCAGTTGCCTCCTCATCTTTTACTGTCTCGTTCTTTTTCTGCAGGACCGTTGTTTGCTCTCAACGGCAGTTGCTGGGGCTAAC
AGAACTGGCTGTTGGGAGAGAGAGGCGAGGCAACGCCGCCCGGCCCTGCCATTCCATTTTACTGCTTAACTCAACCTGGAGTGTCAGGAC
CTATTCTCCTGCATTCTCGCTGCACTATACGGGGGAGCCAAGTCACTCTGTACTCACTGGACAGCCAGGCTGGGTGGAATAGGGTTCTAG
AGTGGAGCAGGGGCTCTGCCCTTTATGGCGACTTTCTAAAAGATTAGCATCAGTGTCTTTTGACAGTATAGCATCTGGGGTGGGACGCGG
AGAGGAGGCTTTGCTTGCTAAACGGCTTCTTTCTCCGCCGGTGATCTGGATTTGTTTCCTCGGCCCCCTCCCCCCGCTCCTTTCTTTCTC
CCCTCCCGCCTTTAGCAAAGTGACACAGGCGACACCTGCTCGCTTGTGTTCGATGTTGGAACTCGCACCTCCTCGGTGGTGACGGTGCCA
GGGCACTGCTACCAGGGGGACATCGGCGGGTTTCCCTTCCTTCCAGCCCACGATGCCTAGAAGGGCAGCGGGTGGGCTGCGTGGGGCTCT
GCCCGCAGCACTTCGAGGCGGGATTGAGGGGCTGAAGCTGGCCAGGAGTTGCTGCTAAGTGGATTCGAGTGGAAGGCGCCAAGTCTCCGC
GAGGGCACCAGCGGGGACCTATCTGCGAGCAGTGGGAACAGGGGCACCTGGACGGAGGAACGCGGGCGTCTGGAGGGGGGACATCGGCTG
AGCTCAGAGCCTCTCCTCCTTCCTGTCCCGAGCTTCCCAGCAACTCCGCCACGTTGGAGACCCGGTACCTGCGAGAGCCAGGGAACTCGA
GAAGTGCGTGGCCGAGGCTGCTTTCCTGAAGGTGAATCATTCTGTCCAATTGCCTTTCCCCAGAGAACAAGAGGGAGGGCGGGAGAGAGG
GAACGGAGGATGTGTGAGTGTGTGTGTGTGTGAGAGGGAGAGACGACGTGAGGCGAGAGGAAAAGTCTTTAGTCGGCCTTAAAAGCAAAC
AAATCAGAGATGGAATAAGAGCGGTAATTGCAGCAAGACCGCCTTGATTCTTGCAGTCCAGGGAGCTGAGCGCACCGCGCGCATCCGGCG
AGGACAGGAGGCGACCGCGGGCGCTGCCAAGGGCTGCGGGACTTTGGCTTTTCCTCAGTAAACAAATCTTTTGATTACTTTGACACTGTG
GAATAAAGAAGCGGGGAGAAGGATCAGGCTCACCTTCACCCGCTTCAGGGGGATTCCAGCTTGGATGTCAGATTCCTGAACCGTCTTTGC
CATCGGAGGAGGAAACACATCCACACACGCGCGCGCACACTCGCACGCTCAGGGCCACACTCACACGCCGCCCTCCACGATCACACAGCA
CCAGACTTCGGTTCCCTATGCCCCTGGATGGTGACGGCGGATTGGCATCTTGGAAGCGATGCGAGAGCGATAAGGCTGGCGCCGGCCCGC
AAAAGCTGCAGGAGCATCGCTAGGTGTTGCCGCCACCGGGAAGCGGGGCTGCAGGATGAGTAAGAGATACTTACAGAAAGCAACAAAAGG
AAAACTGCTAATAATAATATTTATTGTAACCTTGTGGGGGAAAGTTGTATCCAGTGCAAACCATCATAAAGCTCACCATGTTAAAACGGG
AACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTGCTTCCCTGG
GCAGGTGGCAGGCACCACGCGAGCTGCTCCATCATGTGTGGATGCTTCAATAGTGGAACAGAAATGGTGGTGCCATATGCAGCCATGTCT
AGAGGGAGAAGAATGTAAAGTTCTTCCGGATCGGAAAGGATGGAGCTGTTCCTCTGGGAATAAAGTCAAAACAACTAGGCCTTTCTGAGA
AAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTA
CATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGTATCCCCTT
AACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATTATTCTGCAA
GCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCAGGCCGC
TGCAGGAGCCCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTGATGCATAAACTGTCACCTGAAGAGTACGTATTAGCTGC
CATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTTCTGGAAGCAGTTAATAAAAAGTAAAACATGGCTAAAAG
CTTACGGAGTAAGTGGAAAAGAAAGATGCGTGCTGAAAAGAGAAAAAAGAATGCCCCAAAGGAGGCCAGCAGGCTTAAAAGTATTCTCAA
ACTAGACGGTGATGTTTTAATGAAAGATGTTCAAGAGATAGCAACTGTGGTGGTACCCAAACCCAAACATTGCCAAGAGAAAATGCAATG
TGAGGTAAAAGATGAAAAAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGGACAGTACCC

>28827_28827_2_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000416284_TMBIM4_chr12_66547228_ENST00000556010_length(amino acids)=302AA_BP=
MRKSQSPAALGSARGRLLSSPDARGALSSLDCKNQGGLAAITALIPSLICLLLRPTKDFSSRLTSSLPLTHTHTHTSSVPSLPPSLLFSG
ERQLDRMIHLQESSLGHALLEFPGSRRYRVSNVAELLGSSGQEGGEALSSADVPPPDARVPPSRCPCSHCSQIGPRWCPRGDLAPSTRIH
LAATPGQLQPLNPASKCCGQSPTQPTRCPSRHRGLEGRETRRCPPGSSALAPSPPRRCEFQHRTQASRCRLCHFAKGGRGERKERGEGAE

--------------------------------------------------------------
>28827_28827_3_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000550003_TMBIM4_chr12_66547228_ENST00000539652_length(transcript)=1211nt_BP=358nt
CTCTCTTGTTGCTCAAGCCCCTTAGTGTGATCTCCTCATCTCCATCATCCCAGATGGCAAAAATGCAGGGGAAGGAGAAGCTCACCATGT
TAAAACGGGAACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTG
CTTCCCTGGGCAGGTGGCAGGCACCACGCGAGCTGCTCCATCATGTGTGGATGCTTCAATAGTGGAACAGAAATGGTGGTGCCATATGCA
GCCATGTCTAGAGGGAGAAGAATGTAAAGTTCTTCCGGATCGGAAAGGATGGAGCTGTTCCTCTGGGAATAAAGTCAAAACAACTAGGCC
TTTCTGAGAAAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGG
ACATTTGTACATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAG
TATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATT
ATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGA
GCAGGCCGCTGCAGGAGCCCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTGATGCATAAACTGTCACCTGAAGAGTACGT
ATTAGCTGCCATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTTCTGGAAGCAGTTAATAAAAAGTAAAACAT
GGCTAAAAGCTTACGGAGTAAGTGGAAAAGAAAGATGCGTGCTGAAAAGAGAAAAAAGAATGCCCCAAAGGAGGCCAGCAGGCTTAAAAG
TATTCTCAAACTAGACGGTGATGTTTTAATGAAAGATGTTCAAGAGATAGCAACTGTGGTGGTACCCAAACCCAAACATTGCCAAGAGAA
AATGCAATGTGAGGTAAAAGATGAAAAAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGG

>28827_28827_3_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000550003_TMBIM4_chr12_66547228_ENST00000539652_length(amino acids)=134AA_BP=
MRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYII

--------------------------------------------------------------
>28827_28827_4_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000550003_TMBIM4_chr12_66547228_ENST00000556010_length(transcript)=1199nt_BP=358nt
CTCTCTTGTTGCTCAAGCCCCTTAGTGTGATCTCCTCATCTCCATCATCCCAGATGGCAAAAATGCAGGGGAAGGAGAAGCTCACCATGT
TAAAACGGGAACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTG
CTTCCCTGGGCAGGTGGCAGGCACCACGCGAGCTGCTCCATCATGTGTGGATGCTTCAATAGTGGAACAGAAATGGTGGTGCCATATGCA
GCCATGTCTAGAGGGAGAAGAATGTAAAGTTCTTCCGGATCGGAAAGGATGGAGCTGTTCCTCTGGGAATAAAGTCAAAACAACTAGGCC
TTTCTGAGAAAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGG
ACATTTGTACATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAG
TATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATT
ATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGA
GCAGGCCGCTGCAGGAGCCCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTGATGCATAAACTGTCACCTGAAGAGTACGT
ATTAGCTGCCATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTTCTGGAAGCAGTTAATAAAAAGTAAAACAT
GGCTAAAAGCTTACGGAGTAAGTGGAAAAGAAAGATGCGTGCTGAAAAGAGAAAAAAGAATGCCCCAAAGGAGGCCAGCAGGCTTAAAAG
TATTCTCAAACTAGACGGTGATGTTTTAATGAAAGATGTTCAAGAGATAGCAACTGTGGTGGTACCCAAACCCAAACATTGCCAAGAGAA
AATGCAATGTGAGGTAAAAGATGAAAAAGATGACATGAAAATGGAGACTGATATTAAGAGAAACAAAAAGACTCTTCTAGACCAGCATGG

>28827_28827_4_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000550003_TMBIM4_chr12_66547228_ENST00000556010_length(amino acids)=134AA_BP=
MRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYII

--------------------------------------------------------------
>28827_28827_5_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000551619_TMBIM4_chr12_66547228_ENST00000358230_length(transcript)=3308nt_BP=574nt
AAAGTAATTTTCTGAAGGGAAGCTGCAGAATATGGAAAACATATATTGGAGCTACATGGATCATGTCAAGTTCAGACTGTAAGGAGTAGA
TGCAGTAGTGAAGCTGTCCATCTCAGGTGAATTGAAAAAGTAAAGAACTACAAAATGCCATCATTCCCTCTCTGTGTTGATTTCTGGTGA
AGCTCAGAGGATGAGTAAGAGATACTTACAGAAAGCAACAAAAGGAAAACTGCTAATAATAATATTTATTGTAACCTTGTGGGGGAAAGT
TGTATCCAGTGCAAACCATCATAAAGCTCACCATGTTAAAACGGGAACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAA
GATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACCACGCGAGCTGCTCCATCATGTGTGGATGC
TTCAATAGTGGAACAGAAATGGTGGTGCCATATGCAGCCATGTCTAGAGGGAGAAGAATGTAAAGTTCTTCCGGATCGGAAAGGATGGAG
CTGTTCCTCTGGGAATAAAGTCAAAACAACTAGGCCTTTCTGAGAAAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTG
ACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTACATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTG
GGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGTATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACT
GTGGCAGTTGTTGTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTAT
ACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCAGGGCTGTTTGCTCTTTTGTGGATATTGTGCCTGTCAGGATTCTTGAAGTTT
TTTTTTTATAGTGAGATAATGGAGTTGGTCTTAGCCGCTGCAGGAGCCCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTG
ATGCATAAACTGTCACCTGAAGAGTACGTATTAGCTGCCATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTT
CTGGAAGCAGTTAATAAAAAGTAATTAAAAGTATCTCAGCTCAACTGAAGAACAACAAAAAAAATTTAATGAGAAAAAAGGATTAAAGTA
ATTGGAAGCAGTATATAGAAACTGTTTCATTAAGTAATAAAGTTTGAAACAATGATTAAATACTGTTACAATCTTTATTTGTATCATATG
TAATTTTGAGAGCTTTAAAATCTTACTATTCTTTATGATACCTCATTTCTAAATCCTTGATTTAGGATCTCAGTTAAGAGCTATCAAAAT
TCTATTAAAAATGCTTTTCTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCACCACTTTGGGAGACCGAGGCAGGTGGATCACGAGGTC
AAGAGGTTGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCACACACCTGTA
GTCCCAGCTAGTCAAGAGGCTGAGGCCAGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCATTGAGCCAAGATCACGCCACTGCATTCC
AGCCTGGTGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAATTTTTCTTCCTAAATTAGCCACGCATAGCAGTTCGTTTGCAATTC
AAAAATAATTTTATGAGTAGATAAGAATATCAGTTTACCGTTGTCTAGTGATTTTATCTAAATTTTCCCTGAATTATTAAGTAATATTGA
TTTGGCTTTGATTCTGAAGTAGTAGAGTCTTTACCATTATAAACTGTAAATCTCTTTTTGCTTAAAAGGAAAAAAATGTAAAAGATAAAT
TCCACAGAGAATTATTCAGTATTACATTAAAATGTTAATGACTTTTTATTTTAAATTGTACTAACATTAAAAGTTGGCCTGAAAGTCAGA
TATTATGACAAAATTTGACATTAATTGTTTTTAAAGTATAGATTTCATTTGAAATTATAGAATGGTAATGTGGTTAGAGGACACCAAAGA
TACTGGGTCATCAGCCATTAAGTATATCTATTTCAAAATTAAAATATTTGGGAAGTATTGTCTTATGGTTTCATTTGTGTTGGTCCACAC
AGCATGTTAGGTCAGTGTACCAGTAACCAATGAAATTTTGTCAAATTCCCTCACTGTACTAGTTTGTTAGGCTGCCATAACAAAGTTCTA
CAGCTTGGGTGGCTTCAACAAGAAATTTGTTTTCCCACAGTTCTGGAGGCTAAAAGTCCAAGATCAAGGTGTTAGCAGGGTTGGTTTCCT
TTGAGGCCTTTCTCTTTGATTTGTAGATGGCCATCTTCTCCCTGTGTCTTTAAATGGCCTTCCCTCTGTACTTGTCTGTGCCCAAATTTC
TTCTTCTTATGAGGACACCAGTCATACTGGATTAGGGCCCACACTGAGGACCTCATTTTTCCTTAATTATCTCTTTCAAAACCTATCTCC
AAATACAGTCACATTCTGAAGTGCTGGGATTAGGATTTCTTCATGTGAATTTTGGGGGGACTACAACTCAGCCCATAACACCCCCTAAGT
ATTTCCCAGCTATTAAGTTGAAATAAACTTGTAGTATCAATTTAAGCTTGCATGATTTGTAGATGTAAATTTGACTTTATTATCATTAAC
TGTTGAATTATCAAGTGTATGATGCAGTGCAATCAAGTTTAACAGCATGGTGGGTAAGAGCATCTAGATTAGAATCATTGCAGTCCAACC
AGGTGCTTAAGTGACATTTGGCGAATTATTTATCCTTCCTTAGGTCTTCTGCCTCATCTTCATAATGGGAATAATGATGTCTAGCTTATT
GGGCTGTTATAAGGATTAAATGAGATAGATAAATAAACTAAACTAAGTGCTTAATTAATGTCAGCTGATGGTATTAATACCATTTTCTTT
TTTTTTTTTTTTTTTTTTTTTTAATTTATTTTTTTATTGATAATTCTTGGTTGTTTCTCACAGAGGGGGATTTGGCAGGGTCATGGGACA
ATAGTGGAGGGAAGGTCAGCAGATAAACAAGTGAACAAAGGTCTCTGGTTTTCCTAGGCAGAGGACCCTGCAGCCTTCCGCAGTGTTTGT

>28827_28827_5_FAM19A2-TMBIM4_FAM19A2_chr12_62147403_ENST00000551619_TMBIM4_chr12_66547228_ENST00000358230_length(amino acids)=204AA_BP=
MRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYII
LQAFILTTTVFFGLTVYTLQSKKDFSKFGAGLFALLWILCLSGFLKFFFYSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAA

--------------------------------------------------------------

Top

Fusion Gene PPI Analysis for FAM19A2-TMBIM4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

Related Drugs for FAM19A2-TMBIM4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

Related Diseases for FAM19A2-TMBIM4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource