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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:FBXW7-ARFIP1 (FusionGDB2 ID:29912) |
Fusion Gene Summary for FBXW7-ARFIP1 |
Fusion gene summary |
Fusion gene information | Fusion gene name: FBXW7-ARFIP1 | Fusion gene ID: 29912 | Hgene | Tgene | Gene symbol | FBXW7 | ARFIP1 | Gene ID | 55294 | 27236 |
Gene name | F-box and WD repeat domain containing 7 | ADP ribosylation factor interacting protein 1 | |
Synonyms | AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 | HSU52521 | |
Cytomap | 4q31.3 | 4q31.3 | |
Type of gene | protein-coding | protein-coding | |
Description | F-box/WD repeat-containing protein 7F-box and WD repeat domain containing 7, E3 ubiquitin protein ligaseF-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)F-box protein FBW7F-box protein FBX30F-box protein SEL-10archipelagohomolog of | arfaptin-1 | |
Modification date | 20200327 | 20200313 | |
UniProtAcc | Q969H0 | P53367 | |
Ensembl transtripts involved in fusion gene | ENST00000263981, ENST00000281708, ENST00000296555, ENST00000393956, ENST00000603548, ENST00000603841, ENST00000604095, ENST00000604872, | ENST00000511289, ENST00000353617, ENST00000356064, ENST00000405727, ENST00000451320, ENST00000429148, | |
Fusion gene scores | * DoF score | 15 X 9 X 10=1350 | 10 X 10 X 11=1100 |
# samples | 17 | 19 | |
** MAII score | log2(17/1350*10)=-2.98935275580049 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(19/1100*10)=-2.53343220008107 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: FBXW7 [Title/Abstract] AND ARFIP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | ARFIP1(153701378)-FBXW7(153271276), # samples:1 FBXW7(153268082)-ARFIP1(153831216), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. | FBXW7-ARFIP1 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF. FBXW7-ARFIP1 seems lost the major protein functional domain in Hgene partner, which is a CGC due to the frame-shifted ORF. FBXW7-ARFIP1 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | FBXW7 | GO:0016567 | protein ubiquitination | 12354302|15103331 |
Hgene | FBXW7 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 15103331|17434132 |
Hgene | FBXW7 | GO:0031398 | positive regulation of protein ubiquitination | 12628165 |
Hgene | FBXW7 | GO:0045741 | positive regulation of epidermal growth factor-activated receptor activity | 20208556 |
Hgene | FBXW7 | GO:0050821 | protein stabilization | 20208556 |
Hgene | FBXW7 | GO:0051443 | positive regulation of ubiquitin-protein transferase activity | 12628165 |
Hgene | FBXW7 | GO:1901800 | positive regulation of proteasomal protein catabolic process | 23858059 |
Hgene | FBXW7 | GO:1903378 | positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway | 23858059 |
Hgene | FBXW7 | GO:2000060 | positive regulation of ubiquitin-dependent protein catabolic process | 20208556 |
Tgene | ARFIP1 | GO:0006886 | intracellular protein transport | 12606037 |
Tgene | ARFIP1 | GO:0050708 | regulation of protein secretion | 12606037 |
Fusion gene breakpoints across FBXW7 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across ARFIP1 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | Non-Cancer | ERR315398 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
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Fusion Gene ORF analysis for FBXW7-ARFIP1 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000263981 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000281708 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000296555 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000393956 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000603548 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
5CDS-intron | ENST00000603841 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000263981 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000263981 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000263981 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000263981 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000281708 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000281708 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000281708 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000281708 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000296555 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000296555 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000296555 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000296555 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000393956 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000393956 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000393956 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000393956 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603548 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603548 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603548 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603548 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603841 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603841 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603841 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
Frame-shift | ENST00000603841 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000263981 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000281708 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000296555 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000393956 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000603548 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
In-frame | ENST00000603841 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604095 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604095 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604095 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604095 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604095 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604872 | ENST00000353617 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604872 | ENST00000356064 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604872 | ENST00000405727 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604872 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-3CDS | ENST00000604872 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-intron | ENST00000604095 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
intron-intron | ENST00000604872 | ENST00000511289 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000281708 | FBXW7 | chr4 | 153268082 | - | ENST00000451320 | ARFIP1 | chr4 | 153831216 | + | 4250 | 1956 | 1002 | 2111 | 369 |
ENST00000603548 | FBXW7 | chr4 | 153268082 | - | ENST00000429148 | ARFIP1 | chr4 | 153831216 | + | 1917 | 906 | 81 | 1061 | 326 |
ENST00000296555 | FBXW7 | chr4 | 153268082 | - | ENST00000429148 | ARFIP1 | chr4 | 153831216 | + | 1563 | 552 | 180 | 707 | 175 |
ENST00000263981 | FBXW7 | chr4 | 153268082 | - | ENST00000429148 | ARFIP1 | chr4 | 153831216 | + | 1738 | 727 | 229 | 882 | 217 |
ENST00000393956 | FBXW7 | chr4 | 153268082 | - | ENST00000429148 | ARFIP1 | chr4 | 153831216 | + | 1286 | 275 | 71 | 430 | 119 |
ENST00000603841 | FBXW7 | chr4 | 153268082 | - | ENST00000429148 | ARFIP1 | chr4 | 153831216 | + | 1812 | 801 | 0 | 956 | 318 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000281708 | ENST00000451320 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.000240156 | 0.99975985 |
ENST00000603548 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.000352483 | 0.9996475 |
ENST00000296555 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.021627951 | 0.97837204 |
ENST00000263981 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.030787995 | 0.96921194 |
ENST00000393956 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.12897725 | 0.8710227 |
ENST00000603841 | ENST00000429148 | FBXW7 | chr4 | 153268082 | - | ARFIP1 | chr4 | 153831216 | + | 0.000388017 | 0.99961203 |
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Fusion Genomic Features for FBXW7-ARFIP1 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
FBXW7 | chr4 | 153268081 | - | ARFIP1 | chr4 | 153831215 | + | 6.38E-06 | 0.9999937 |
FBXW7 | chr4 | 153268081 | - | ARFIP1 | chr4 | 153831215 | + | 6.38E-06 | 0.9999937 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for FBXW7-ARFIP1 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr4:153701378/chr4:153271276) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
FBXW7 | ARFIP1 |
FUNCTION: Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds phosphorylated sites/phosphodegrons within target proteins and thereafter bring them to the SCF complex for ubiquitination (PubMed:22748924, PubMed:17434132, PubMed:26976582, PubMed:28727686). Identified substrates include cyclin-E (CCNE1 or CCNE2), DISC1, JUN, MYC, NOTCH1 released notch intracellular domain (NICD), NOTCH2, MCL1, and probably PSEN1 (PubMed:11565034, PubMed:12354302, PubMed:11585921, PubMed:15103331, PubMed:14739463, PubMed:17558397, PubMed:17873522, PubMed:22608923, PubMed:22748924, PubMed:29149593, PubMed:25775507, PubMed:28007894, PubMed:26976582, PubMed:28727686). Acts as a negative regulator of JNK signaling by binding to phosphorylated JUN and promoting its ubiquitination and subsequent degradation (PubMed:14739463). SCF(FBXW7) complex mediates the ubiquitination and subsequent degradation of NFE2L1 (By similarity). Involved in bone homeostasis and negative regulation of osteoclast differentiation (PubMed:29149593). Regulates the amplitude of the cyclic expression of hepatic core clock genes and genes involved in lipid and glucose metabolism via ubiquitination and proteasomal degradation of their transcriptional repressor NR1D1; CDK1-dependent phosphorylation of NR1D1 is necessary for SCF(FBXW7)-mediated ubiquitination (PubMed:27238018). {ECO:0000250|UniProtKB:Q8VBV4, ECO:0000269|PubMed:11565034, ECO:0000269|PubMed:11585921, ECO:0000269|PubMed:14739463, ECO:0000269|PubMed:15103331, ECO:0000269|PubMed:17434132, ECO:0000269|PubMed:17558397, ECO:0000269|PubMed:17873522, ECO:0000269|PubMed:22608923, ECO:0000269|PubMed:22748924, ECO:0000269|PubMed:25775507, ECO:0000269|PubMed:26976582, ECO:0000269|PubMed:27238018, ECO:0000269|PubMed:28007894, ECO:0000269|PubMed:28727686, ECO:0000269|PubMed:29149593, ECO:0000305|PubMed:12354302}. | FUNCTION: Plays a role in controlling biogenesis of secretory granules at the trans-Golgi network (PubMed:22981988). Mechanisitically, binds ARF-GTP at the neck of a growing secretory granule precursor and forms a protective scaffold (PubMed:9038142, PubMed:22981988). Once the granule precursor has been completely loaded, active PRKD1 phosphorylates ARFIP1 and releases it from ARFs (PubMed:22981988). In turn, ARFs induce fission (PubMed:22981988). Through this mechanism, ensures proper secretory granule formation at the Golgi of pancreatic beta cells (PubMed:22981988). {ECO:0000269|PubMed:22981988, ECO:0000269|PubMed:9038142}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 278_324 | 162 | 628.0 | Domain | F-box |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 278_324 | 242 | 708.0 | Domain | F-box |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 278_324 | 124 | 590.0 | Domain | F-box |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 278_324 | 242 | 708.0 | Domain | F-box |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 278_324 | 242 | 708.0 | Domain | F-box |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 378_418 | 162 | 628.0 | Repeat | Note=WD 1 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 420_456 | 162 | 628.0 | Repeat | Note=WD 2 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 459_498 | 162 | 628.0 | Repeat | Note=WD 3 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 500_536 | 162 | 628.0 | Repeat | Note=WD 4 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 539_578 | 162 | 628.0 | Repeat | Note=WD 5 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 580_618 | 162 | 628.0 | Repeat | Note=WD 6 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000263981 | - | 3 | 11 | 622_659 | 162 | 628.0 | Repeat | Note=WD 7 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 378_418 | 242 | 708.0 | Repeat | Note=WD 1 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 420_456 | 242 | 708.0 | Repeat | Note=WD 2 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 459_498 | 242 | 708.0 | Repeat | Note=WD 3 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 500_536 | 242 | 708.0 | Repeat | Note=WD 4 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 539_578 | 242 | 708.0 | Repeat | Note=WD 5 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 580_618 | 242 | 708.0 | Repeat | Note=WD 6 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000281708 | - | 4 | 12 | 622_659 | 242 | 708.0 | Repeat | Note=WD 7 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 378_418 | 124 | 590.0 | Repeat | Note=WD 1 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 420_456 | 124 | 590.0 | Repeat | Note=WD 2 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 459_498 | 124 | 590.0 | Repeat | Note=WD 3 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 500_536 | 124 | 590.0 | Repeat | Note=WD 4 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 539_578 | 124 | 590.0 | Repeat | Note=WD 5 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 580_618 | 124 | 590.0 | Repeat | Note=WD 6 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000296555 | - | 3 | 11 | 622_659 | 124 | 590.0 | Repeat | Note=WD 7 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 378_418 | 242 | 708.0 | Repeat | Note=WD 1 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 420_456 | 242 | 708.0 | Repeat | Note=WD 2 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 459_498 | 242 | 708.0 | Repeat | Note=WD 3 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 500_536 | 242 | 708.0 | Repeat | Note=WD 4 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 539_578 | 242 | 708.0 | Repeat | Note=WD 5 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 580_618 | 242 | 708.0 | Repeat | Note=WD 6 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603548 | - | 5 | 13 | 622_659 | 242 | 708.0 | Repeat | Note=WD 7 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 378_418 | 242 | 708.0 | Repeat | Note=WD 1 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 420_456 | 242 | 708.0 | Repeat | Note=WD 2 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 459_498 | 242 | 708.0 | Repeat | Note=WD 3 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 500_536 | 242 | 708.0 | Repeat | Note=WD 4 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 539_578 | 242 | 708.0 | Repeat | Note=WD 5 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 580_618 | 242 | 708.0 | Repeat | Note=WD 6 |
Hgene | FBXW7 | chr4:153268082 | chr4:153831216 | ENST00000603841 | - | 3 | 11 | 622_659 | 242 | 708.0 | Repeat | Note=WD 7 |
Tgene | ARFIP1 | chr4:153268082 | chr4:153831216 | ENST00000353617 | 7 | 9 | 153_353 | 322 | 374.0 | Domain | AH | |
Tgene | ARFIP1 | chr4:153268082 | chr4:153831216 | ENST00000356064 | 6 | 8 | 153_353 | 290 | 342.0 | Domain | AH | |
Tgene | ARFIP1 | chr4:153268082 | chr4:153831216 | ENST00000405727 | 6 | 8 | 153_353 | 290 | 342.0 | Domain | AH | |
Tgene | ARFIP1 | chr4:153268082 | chr4:153831216 | ENST00000451320 | 7 | 9 | 153_353 | 322 | 374.0 | Domain | AH |
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Fusion Gene Sequence for FBXW7-ARFIP1 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>29912_29912_1_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000263981_ARFIP1_chr4_153831216_ENST00000429148_length(transcript)=1738nt_BP=727nt AGTGCGTTGTGTTCTTACGGGTTCCCTGGAGCGGATCACCATATAATTGATGTGCAGTCTGCATTGCTGAATCCTGGACTGCACCATTCT GTGTTCAAGGGAAGATGTAATCTGATCCCTCTGCTGCTGAGGGAGGAATCTGTTCAGTCAAGGCTTTGACAGGGCATAGTCTCCTCCAAT AATCTTCTCCGTTCTCTCTCATTATTCCCTCGAGTTCTTCTCAGTCAAGCTGCATGTATGTATGTGTGTCCCGAGAAGCGGTTTGATACT GAGCTGCATTTGCCTTTACTGTGGAGTTTTGTTGCCGGTTCTGCTCCCTAATCTTCCTTTTCTGACGTGCCTGAGCATGTCCACATTAGA ATCTGTGACATACCTACCTGAAAAAGGTTTATATTGTCAGAGACTGCCAAGCAGCCGGACACACGGGGGCACAGAATCACTGAAGGGGAA AAATACAGAAAATATGGGTTTCTACGGCACATTAAAAATGATTTTTTACAAAATGAAAAGAAAGTTGGACCATGGTTCTGAGGTCCGCTC TTTTTCTTTGGGAAAGAAACCATGCAAAGTCTCAGAATATACAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACTTTTGG GGACCTCAGAGCAGCCAATGGCCAAGGGCAACAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTAAAAAT GTTTCAGGTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACA GACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGAAAATA AAAAGAAAGTCGCGTTGTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGT GATTCTTGCACAAACAGCTTTAATTTTTCCCTTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGTTTCTA TAATCTGAACACAATAATTTTCCTTTTTGAGAAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCTAATAG AGATTTGCACTGACAAGATAAAAATTCAAGGTTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACATGATT TGTATCAACATCAGATATTTTATATGTGAATATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTATTTTG CAGAGTAAAGTTATATGGTGTTCCTGCAGCGTCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAATACCT TTTTAAAAATGAATCTGTACCACTGTAATTTTATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCTTTTAA GCTTATGAATTTGCTTCACCCGAAGTCATTGGACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAATTTTTT TTTTTGACAGGTGGACGTGGGAATGGAAATTCTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAGTTCCA >29912_29912_1_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000263981_ARFIP1_chr4_153831216_ENST00000429148_length(amino acids)=217AA_BP=165 MHVCMCVPRSGLILSCICLYCGVLLPVLLPNLPFLTCLSMSTLESVTYLPEKGLYCQRLPSSRTHGGTESLKGKNTENMGFYGTLKMIFY KMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQVKVLHNQLVLFHNA -------------------------------------------------------------- >29912_29912_2_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000281708_ARFIP1_chr4_153831216_ENST00000451320_length(transcript)=4250nt_BP=1956nt CCCGCCCCTCTCTCTGGAGTGAGGCGAGAGCCCCGCACAGAGCGAGGGAGACAGCGAGCTGAGCTCCGGGCGCTGCCGCTGCCGCTGCCG CCGCCGCCGCCGCTGAGACTGAGAGCGAAGGAGCATCCGAGAGATCCAGTCCCCCTGCACTGGCCGCCGCCGAGACCTTCGCTCTCACCT GGGCCAGCGGGAGCCGCGGCCGCACTCCTTTCCCCCCCTCACCTTCCCGGCCGGCAGCGGCGGCTGCACACGCCGGAGCCGGAGCCAGAG CCGGAGCCCGAGCCTGAGCCGGAGCCGGCGGCTTGGGGGGCAGGGAGGCGGCTACCACGGGCCGGGAGTGGGTAGCTGCTCCGCGGTGAG AGAACGCTGAGGAGGCGCCAGAGCTTCTGCCTCGTCCCGTGGGGCGTGGGGCGAGACCCCCAAGGTGTAGGGAGGGGGGTCCCAGCCGCA GCGACACATGCGGGAGCCGGGAGCGGGGGCGGCGCCGAGCGGAGCCGGCCGGGTCCCTCGCCTTGCCGCCGACTCGGCCACCCGCCCGGG GCCGTAGCATCTTGCCCCGGAGTGTATGAACCGGGGCCCCAACCAAGCTCGGCAACCACCCCCCGGCCGGGGGGGCGGGGACCCCGATGT GAAGCGGCGGCTGGGGCGGCGGAGAGAACAGGACCGACGCCGCCGTCCTTTCCTCACCTTCCCCCTCCCCTCAGCCCCCTCCGGGGGTCT TCTCCCTTGGCCAGTCGCCGGCCCCCCGGCTCCTTGGCTGGACTCCGGGAGGAGTTCCTAGAGCCCCCCTCCCCCGCCCCAGTCCCGAGG GCGGCGGGGCCGGGGGGGACCCGGGGGGCCGGCCGCAGCCTCCACCCAGAGGAAACTTTACAAAAACAAAATCCGGAGTCTCCCAAACCT GACTGTCCCGGGAGAAGTGGCCCTGGACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAGGTAAGCGGGGCCGCC GCCTCCCCTCCCCTGGCAGCGCGGAAGAGACCCGGGTTGCCGCCTGGTTTAGCGACACGAGCACCGCTTCTTCCTCAGTACCGCGCCGGA GCCTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTTTCTAAAAGTAATGTGAAA ACCTTTGCATCTTCTGATAGTCTAGCCAAGGTCCAAGAAGTAGCAAGCTGGCTTTTGGAAATGAATCAGGAACTGCTCTCTGTGGGCAGC AAAAGACGACGAACTGGAGGCTCTCTGAGAGGTAACCCTTCCTCAAGCCAGGTAGATGAAGAACAGATGAATCGTGTGGTAGAGGAGGAA CAGCAACAGCAACTCAGACAACAAGAGGAGGAGCACACTGCAAGGAATGGTGAAGTTGTTGGAGTAGAACCTAGACCTGGAGGCCAAAAT GATTCCCAGCAAGGACAGTTGGAAGAAAACAATAATAGATTTATTTCGGTAGATGAGGACTCCTCAGGAAACCAAGAAGAACAAGAGGAA GATGAAGAACATGCTGGTGAACAAGATGAGGAGGATGAGGAGGAGGAGGAGATGGACCAGGAGAGTGACGATTTTGATCAGTCTGATGAT AGTAGCAGAGAAGATGAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCACCAACTCTCCTCCCCA TTCTATACAAAAACAACAAAAATGAAAAGAAAGTTGGACCATGGTTCTGAGGTCCGCTCTTTTTCTTTGGGAAAGAAACCATGCAAAGTC TCAGAATATACAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTCAGAGCAGCCAATGGCCAAGGGCAA CAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTAAAAATGTTTCAGGTTAAAGTATTGCACAATCAGCTG GTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACACTTAAACAGTTCCATATCAAATTGAAA ACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGAAAATAAAAAGAAAGTCGCGTTGTTATATTTCTAAAC CAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGTGATTCTTGCACAAACAGCTTTAATTTTTCCC TTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGTTTCTATAATCTGAACACAATAATTTTCCTTTTTGAG AAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCTAATAGAGATTTGCACTGACAAGATAAAAATTCAAGG TTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACATGATTTGTATCAACATCAGATATTTTATATGTGAAT ATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTATTTTGCAGAGTAAAGTTATATGGTGTTCCTGCAGCG TCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAATACCTTTTTAAAAATGAATCTGTACCACTGTAATTT TATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCTTTTAAGCTTATGAATTTGCTTCACCCGAAGTCATTG GACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAATTTTTTTTTTTGACAGGTGGACGTGGGAATGGAAATT CTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAGTTCCATTTTGATAGAAGTGAATACATAGACAGCTTT TATTGACTTCCATATGTAACAATACCGTTTAAGCCTTAAATCACAGATATGTGCCTTCTCAGATACAGTAATTCTTGTTCAACCAATGTA CAAAATCCATAAAGAAACCCCTGTTGGATAATGTTTGATGTGTCTATTCCTTCCATGGAATGGAGCACTATGTATGAATGTTGGGTTTCT TTGTACTTGTTAAGCCACATTTGAGGTTTATGGTAAAAATCATCTTTTGAGTTTGCTCTTTGGTTTTTCTTCATTCCTTTTGAGGATTGG GAAAACAGAAAGATTCTTTGATTTGGGTAATGAAGAGGTAATTTGGGACAGTGTGGTGGTACCAGGAAGAAAGAGGATTGGAAAGGCCAG TACTGTTTTAGTTGCTCGGCACTGTTGGTTTTGTTTTAATGTGGTTGCCCTGTCCACTACATGGTTCTATCAGTAGTGTAATCCATTTTC AATGTAAAGCTCTTTTAGTTTTTGTCATAGACATAAATTAATATTTTGAGAGGCATCCCTCACCTGTTCATTTCTTCTGTGTTGAAATGA AGTACTTAAAATTACCGTTATACATGAACTTTGTGGACTGTAAGATTTGTTATATATGTTCAAATGCCTTTTAGCTGGCTTTTTAATTAA TATGCCTGTTTTGAGTGCTTAATACAATGTAATGTGATTGTAAATCATACCTATTTTAAATCATTCCTTCCTGTATATTTGTACTCAGAG AGCCTTATTTTATTCTTCCAGCAGAATTACTACTTGTGATAGTTCATTTACATTCCCCAGAATGTGCCTCTAGTGTGAATTTTGTATTCT TATTAAACGTGTTTGCTGCAGTAAATCGTTTCTCTGGACCTTCATAGTTTAAGAAGTAACTATTTGGAAATTCTGAAGACACATAATTTG CGTTTTCTGAACCTTAAAAAAAAAGGTACTTCTGTCACTTATAATTGTTTTAGCTCAGTAAGCTATTTTTTTTCAATGTGAATCTCTTTT GAGAGCTGAACATGTCCATTCTTAACCACATTTCAATAACAGTTACTGTAGCTAAGGAGCTAAATAGTTTCATGGATTAATTTTTTTCAG AATAAATTTAAAATATCCATGATTCTGATAGTGGGCACATGACCAAAAGAAAAAAGTAAATCAATATATTTAGCCAATGGTACATTTACT TTGTTAGGAATGTAATTTATGTTCATTATAGAAAAGAATTAGAAGAAAATTTCAAGTAATAGAAGATAAGTACCTTCCCAAGTGAATAAA >29912_29912_2_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000281708_ARFIP1_chr4_153831216_ENST00000451320_length(amino acids)=369AA_BP=317 MAARKRPGLPPGLATRAPLLPQYRAGAFRSCRFSPKEEGNQPTFSAPRLFSKSNVKTFASSDSLAKVQEVASWLLEMNQELLSVGSKRRR TGGSLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPRPGGQNDSQQGQLEENNNRFISVDEDSSGNQEEQEEDEEH AGEQDEEDEEEEEMDQESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVHQLSSPFYTKTTKMKRKLDHGSEVRSFSLGKKPCKVSEYT STTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGV -------------------------------------------------------------- >29912_29912_3_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000296555_ARFIP1_chr4_153831216_ENST00000429148_length(transcript)=1563nt_BP=552nt CTCAGACAGGTCAGGACATTTGGTAGGGGAAGGTTGAAAGACAAAAGCAGCAGGCCTTGGGTTCTCAGCCTTTTAAAAACTATTATTAAA TATATATTTTTAAAATTTAGTGGTTAGAGCTTTTAGTAATGTGCCTGTATTACATGTAGAGAGTATTCGTCAACCAAGAGGAGTTTTAAA ATGTCAAAACCGGGAAAACCTACTCTAAACCATGGCTTGGTTCCTGTTGATCTTAAAAGTGCAAAAGAGCCTCTACCACATCAAACTGTG ATGAAGATATTTAGCATTAGCATCATTGCCCAAGGCCTCCCTTTTTGTCGAAGACGGATGAAAAGAAAGTTGGACCATGGTTCTGAGGTC CGCTCTTTTTCTTTGGGAAAGAAACCATGCAAAGTCTCAGAATATACAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACT TTTGGGGACCTCAGAGCAGCCAATGGCCAAGGGCAACAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTA AAAATGTTTCAGGTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTT GAACAGACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGA AAATAAAAAGAAAGTCGCGTTGTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATT ATAGTGATTCTTGCACAAACAGCTTTAATTTTTCCCTTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGT TTCTATAATCTGAACACAATAATTTTCCTTTTTGAGAAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCT AATAGAGATTTGCACTGACAAGATAAAAATTCAAGGTTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACA TGATTTGTATCAACATCAGATATTTTATATGTGAATATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTA TTTTGCAGAGTAAAGTTATATGGTGTTCCTGCAGCGTCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAA TACCTTTTTAAAAATGAATCTGTACCACTGTAATTTTATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCT TTTAAGCTTATGAATTTGCTTCACCCGAAGTCATTGGACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAAT TTTTTTTTTTGACAGGTGGACGTGGGAATGGAAATTCTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAG >29912_29912_3_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000296555_ARFIP1_chr4_153831216_ENST00000429148_length(amino acids)=175AA_BP=123 MSKPGKPTLNHGLVPVDLKSAKEPLPHQTVMKIFSISIIAQGLPFCRRRMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTT -------------------------------------------------------------- >29912_29912_4_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000393956_ARFIP1_chr4_153831216_ENST00000429148_length(transcript)=1286nt_BP=275nt ATTTTGCTTTTCCCTTCTAGTCATGATAAAGTATTTCTTGGATGAGAAATTTGCATTTAATGTTAAACTAACTGTTAATGCTATTTTTTA AATGTATCAGTCTTCTATTAATATGGCTGATACCAGGACAAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGG ACCTCAGAGCAGCCAATGGCCAAGGGCAACAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTAAAAATGT TTCAGGTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGA CACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGAAAATAAA AAGAAAGTCGCGTTGTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGTGA TTCTTGCACAAACAGCTTTAATTTTTCCCTTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGTTTCTATA ATCTGAACACAATAATTTTCCTTTTTGAGAAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCTAATAGAG ATTTGCACTGACAAGATAAAAATTCAAGGTTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACATGATTTG TATCAACATCAGATATTTTATATGTGAATATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTATTTTGCA GAGTAAAGTTATATGGTGTTCCTGCAGCGTCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAATACCTTT TTAAAAATGAATCTGTACCACTGTAATTTTATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCTTTTAAGC TTATGAATTTGCTTCACCCGAAGTCATTGGACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAATTTTTTTT TTTGACAGGTGGACGTGGGAATGGAAATTCTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAGTTCCATT >29912_29912_4_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000393956_ARFIP1_chr4_153831216_ENST00000429148_length(amino acids)=119AA_BP=67 MLMLFFKCISLLLIWLIPGQSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQVKVLHNQLVLFHNAIAAYFAGN -------------------------------------------------------------- >29912_29912_5_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000603548_ARFIP1_chr4_153831216_ENST00000429148_length(transcript)=1917nt_BP=906nt CAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTTTCTAAAAGTGATTACTTCCTTAGGATAGATTGCCAGAA GTGGAGTTACTGGGTCAGAGGAATGTGAAAACCTTTGCATCTTCTGATAGTCTAGCCAAGGTCCAAGAAGTAGCAAGCTGGCTTTTGGAA ATGAATCAGGAACTGCTCTCTGTGGGCAGCAAAAGACGACGAACTGGAGGCTCTCTGAGAGGTAACCCTTCCTCAAGCCAGGTAGATGAA GAACAGATGAATCGTGTGGTAGAGGAGGAACAGCAACAGCAACTCAGACAACAAGAGGAGGAGCACACTGCAAGGAATGGTGAAGTTGTT GGAGTAGAACCTAGACCTGGAGGCCAAAATGATTCCCAGCAAGGACAGTTGGAAGAAAACAATAATAGATTTATTTCGGTAGATGAGGAC TCCTCAGGAAACCAAGAAGAACAAGAGGAAGATGAAGAACATGCTGGTGAACAAGATGAGGAGGATGAGGAGGAGGAGGAGATGGACCAG GAGAGTGACGATTTTGATCAGTCTGATGATAGTAGCAGAGAAGATGAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTG GACCTGCCCGTTCACCAACTCTCCTCCCCATTCTATACAAAAACAACAAAAATGAAAAGAAAGTTGGACCATGGTTCTGAGGTCCGCTCT TTTTCTTTGGGAAAGAAACCATGCAAAGTCTCAGAATATACAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACTTTTGGG GACCTCAGAGCAGCCAATGGCCAAGGGCAACAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTAAAAATG TTTCAGGTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAG ACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGAAAATAA AAAGAAAGTCGCGTTGTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGTG ATTCTTGCACAAACAGCTTTAATTTTTCCCTTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGTTTCTAT AATCTGAACACAATAATTTTCCTTTTTGAGAAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCTAATAGA GATTTGCACTGACAAGATAAAAATTCAAGGTTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACATGATTT GTATCAACATCAGATATTTTATATGTGAATATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTATTTTGC AGAGTAAAGTTATATGGTGTTCCTGCAGCGTCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAATACCTT TTTAAAAATGAATCTGTACCACTGTAATTTTATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCTTTTAAG CTTATGAATTTGCTTCACCCGAAGTCATTGGACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAATTTTTTT TTTTGACAGGTGGACGTGGGAATGGAAATTCTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAGTTCCAT >29912_29912_5_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000603548_ARFIP1_chr4_153831216_ENST00000429148_length(amino acids)=326AA_BP=274 MPEVELLGQRNVKTFASSDSLAKVQEVASWLLEMNQELLSVGSKRRRTGGSLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNG EVVGVEPRPGGQNDSQQGQLEENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSREDEHTHTNSVTNSS SIVDLPVHQLSSPFYTKTTKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEW -------------------------------------------------------------- >29912_29912_6_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000603841_ARFIP1_chr4_153831216_ENST00000429148_length(transcript)=1812nt_BP=801nt CTGCAGAATGTGAAAACCTTTGCATCTTCTGATAGTCTAGCCAAGGTCCAAGAAGTAGCAAGCTGGCTTTTGGAAATGAATCAGGAACTG CTCTCTGTGGGCAGCAAAAGACGACGAACTGGAGGCTCTCTGAGAGGTAACCCTTCCTCAAGCCAGGTAGATGAAGAACAGATGAATCGT GTGGTAGAGGAGGAACAGCAACAGCAACTCAGACAACAAGAGGAGGAGCACACTGCAAGGAATGGTGAAGTTGTTGGAGTAGAACCTAGA CCTGGAGGCCAAAATGATTCCCAGCAAGGACAGTTGGAAGAAAACAATAATAGATTTATTTCGGTAGATGAGGACTCCTCAGGAAACCAA GAAGAACAAGAGGAAGATGAAGAACATGCTGGTGAACAAGATGAGGAGGATGAGGAGGAGGAGGAGATGGACCAGGAGAGTGACGATTTT GATCAGTCTGATGATAGTAGCAGAGAAGATGAACATACACATACTAACAGTGTCACGAACTCCAGTAGTATTGTGGACCTGCCCGTTCAC CAACTCTCCTCCCCATTCTATACAAAAACAACAAAAATGAAAAGAAAGTTGGACCATGGTTCTGAGGTCCGCTCTTTTTCTTTGGGAAAG AAACCATGCAAAGTCTCAGAATATACAAGTACCACTGGGCTTGTACCATGTTCAGCAACACCAACAACTTTTGGGGACCTCAGAGCAGCC AATGGCCAAGGGCAACAACGACGCCGAATTACATCTGTCCAGCCACCTACAGGCCTCCAGGAATGGCTAAAAATGTTTCAGGTTAAAGTA TTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACACTTAAACAGTTC CATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATCACAGCGGAAAATAAAAAGAAAGTCGCGTT GTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGTGATTCTTGCACAAACA GCTTTAATTTTTCCCTTTTTCATACTTTAACAATTGAACTGTTAAGGGTGGTTTTAATGTAAACATAGTTTCTATAATCTGAACACAATA ATTTTCCTTTTTGAGAAATCCTTTTGTATTGTGAGGGTTGATGGCTATTTCTGTAGTTTGAAAACATCTAATAGAGATTTGCACTGACAA GATAAAAATTCAAGGTTTTTGGTCCTGGAAATGAGGGCCGATTGTAACTTTTCCAAAGGGAGGTTTACATGATTTGTATCAACATCAGAT ATTTTATATGTGAATATATTAAACATCTTTAAGAGATTCATTTTCATGTATTAAAGAAAAAAGAAACTATTTTGCAGAGTAAAGTTATAT GGTGTTCCTGCAGCGTCCACACAGAGGCAGCAGCTCTAATGAATGATTAGCTTGTGGAGTTGTGGCAAATACCTTTTTAAAAATGAATCT GTACCACTGTAATTTTATTTAGACTTTTTTTTAAAGACACAGAAATCACACTGTCATTTCTGTGAGGCTTTTAAGCTTATGAATTTGCTT CACCCGAAGTCATTGGACAGTTACATTTGCAATTTCTTTTGGTTCATAACAAAACCTGCTTAAGAGAATTTTTTTTTTTGACAGGTGGAC GTGGGAATGGAAATTCTTAATGGTTTCTGGAGTAGAAATCTGTACTTAGAAAACTAGTTTTTGGGTCAGTTCCATTTTGATAGAAGTGAA >29912_29912_6_FBXW7-ARFIP1_FBXW7_chr4_153268082_ENST00000603841_ARFIP1_chr4_153831216_ENST00000429148_length(amino acids)=318AA_BP=266 LQNVKTFASSDSLAKVQEVASWLLEMNQELLSVGSKRRRTGGSLRGNPSSSQVDEEQMNRVVEEEQQQQLRQQEEEHTARNGEVVGVEPR PGGQNDSQQGQLEENNNRFISVDEDSSGNQEEQEEDEEHAGEQDEEDEEEEEMDQESDDFDQSDDSSREDEHTHTNSVTNSSSIVDLPVH QLSSPFYTKTTKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLVPCSATPTTFGDLRAANGQGQQRRRITSVQPPTGLQEWLKMFQVKV -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for FBXW7-ARFIP1 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for FBXW7-ARFIP1 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for FBXW7-ARFIP1 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |