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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FRMD4A-MCM10 (FusionGDB2 ID:31329)

Fusion Gene Summary for FRMD4A-MCM10

check button Fusion gene summary
Fusion gene informationFusion gene name: FRMD4A-MCM10
Fusion gene ID: 31329
HgeneTgene
Gene symbol

FRMD4A

MCM10

Gene ID

55691

55388

Gene nameFERM domain containing 4Aminichromosome maintenance 10 replication initiation factor
SynonymsCCAFCA|FRMD4|bA295P9.4CNA43|DNA43|PRO2249
Cytomap

10p13

10p13

Type of geneprotein-codingprotein-coding
DescriptionFERM domain-containing protein 4AFERM domain containing 4protein MCM10 homologMCM10 minichromosome maintenance deficient 10homolog of yeast MCM10hsMCM10minichromosome maintenance complex component 10
Modification date2020031320200313
UniProtAcc

Q9P2Q2

Q7L590

Ensembl transtripts involved in fusion geneENST00000342409, ENST00000358621, 
ENST00000378503, ENST00000357447, 
ENST00000475141, ENST00000492155, 
ENST00000493380, 
ENST00000378694, 
ENST00000378714, ENST00000484800, 
Fusion gene scores* DoF score16 X 15 X 7=16802 X 2 X 2=8
# samples 172
** MAII scorelog2(17/1680*10)=-3.30485458152842
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: FRMD4A [Title/Abstract] AND MCM10 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFRMD4A(13900847)-MCM10(13214376), # samples:1
Anticipated loss of major functional domain due to fusion event.FRMD4A-MCM10 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
FRMD4A-MCM10 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across FRMD4A (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across MCM10 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-EJ-5525-01AFRMD4Achr10

13900847

-MCM10chr10

13214376

+


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Fusion Gene ORF analysis for FRMD4A-MCM10

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000342409ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000342409ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000342409ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000358621ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000358621ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000358621ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000378503ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000378503ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
Frame-shiftENST00000378503ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
In-frameENST00000357447ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
In-frameENST00000357447ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
In-frameENST00000357447ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000475141ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000475141ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000475141ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000492155ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000492155ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000492155ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000493380ENST00000378694FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000493380ENST00000378714FRMD4Achr10

13900847

-MCM10chr10

13214376

+
intron-3CDSENST00000493380ENST00000484800FRMD4Achr10

13900847

-MCM10chr10

13214376

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000357447FRMD4Achr1013900847-ENST00000378714MCM10chr1013214376+45504804942755753
ENST00000357447FRMD4Achr1013900847-ENST00000484800MCM10chr1013214376+31854804942758754
ENST00000357447FRMD4Achr1013900847-ENST00000378694MCM10chr1013214376+46434804942698734

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000357447ENST00000378714FRMD4Achr1013900847-MCM10chr1013214376+0.000637660.9993624
ENST00000357447ENST00000484800FRMD4Achr1013900847-MCM10chr1013214376+0.0039604870.9960395
ENST00000357447ENST00000378694FRMD4Achr1013900847-MCM10chr1013214376+0.0006669060.9993331

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Fusion Genomic Features for FRMD4A-MCM10


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
FRMD4Achr1013900846-MCM10chr1013214375+6.49E-060.99999356
FRMD4Achr1013900846-MCM10chr1013214375+6.49E-060.99999356

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for FRMD4A-MCM10


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:13900847/chr10:13214376)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FRMD4A

Q9P2Q2

MCM10

Q7L590

FUNCTION: Scaffolding protein that regulates epithelial cell polarity by connecting ARF6 activation with the PAR3 complex (By similarity). Plays a redundant role with FRMD4B in epithelial polarization (By similarity). May regulate MAPT secretion by activating ARF6-signaling (PubMed:27044754). {ECO:0000250|UniProtKB:Q8BIE6, ECO:0000269|PubMed:27044754}.FUNCTION: Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication. Key effector of the RBBP6 and ZBTB38-mediated regulation of DNA-replication and common fragile sites stability; acts as a direct target of transcriptional repression by ZBTB38 (PubMed:24726359). {ECO:0000269|PubMed:11095689, ECO:0000269|PubMed:15136575, ECO:0000269|PubMed:17699597, ECO:0000269|PubMed:19608746, ECO:0000269|PubMed:24726359}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneMCM10chr10:13900847chr10:13214376ENST00000378714220238_389116875.0RegionOB-fold domain
TgeneMCM10chr10:13900847chr10:13214376ENST00000378714220390_415116875.0RegionNote=Zinc finger-like 1
TgeneMCM10chr10:13900847chr10:13214376ENST00000378714220783_802116875.0RegionZinc finger-like 2
TgeneMCM10chr10:13900847chr10:13214376ENST00000378714220816_836116875.0RegionZinc finger-like 3
TgeneMCM10chr10:13900847chr10:13214376ENST00000484800220238_389116876.0RegionOB-fold domain
TgeneMCM10chr10:13900847chr10:13214376ENST00000484800220390_415116876.0RegionNote=Zinc finger-like 1
TgeneMCM10chr10:13900847chr10:13214376ENST00000484800220783_802116876.0RegionZinc finger-like 2
TgeneMCM10chr10:13900847chr10:13214376ENST00000484800220816_836116876.0RegionZinc finger-like 3

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000357447-325382_416372034.0Coiled coilOntology_term=ECO:0000255
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000378503-223382_416371040.0Coiled coilOntology_term=ECO:0000255
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000357447-325627_756372034.0Compositional biasNote=Ser-rich
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000357447-325935_1007372034.0Compositional biasNote=Ser-rich
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000378503-223627_756371040.0Compositional biasNote=Ser-rich
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000378503-223935_1007371040.0Compositional biasNote=Ser-rich
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000357447-32520_322372034.0DomainFERM
HgeneFRMD4Achr10:13900847chr10:13214376ENST00000378503-22320_322371040.0DomainFERM
TgeneMCM10chr10:13900847chr10:13214376ENST00000378714220104_142116875.0Coiled coilOntology_term=ECO:0000255
TgeneMCM10chr10:13900847chr10:13214376ENST00000484800220104_142116876.0Coiled coilOntology_term=ECO:0000255
TgeneMCM10chr10:13900847chr10:13214376ENST000003787142201_156116875.0RegionN-terminal domain
TgeneMCM10chr10:13900847chr10:13214376ENST000004848002201_156116876.0RegionN-terminal domain


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Fusion Gene Sequence for FRMD4A-MCM10


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>31329_31329_1_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000378694_length(transcript)=4643nt_BP=480nt
GAACGCTCACAGAACAGGCAGTGCAATTCCATGTTCCTCTTAAGTATGTTAGCCCTACCGGGAGCTGAGCTGGCCAGTCTACTTGGAGAG
GAAAAGTAGATCTGGGGAAGGTGGAAGGGTCAGTTCCTAAGTGACTTCCTCCTCGGGGATGGTAAGGGCATTTGCTGATCTCCAGTGACT
GCCTGGTGCCTCATGGTCAGACTCGGCTGTCTCACTCCCAGATATCTGATTTTGCAAAAAGGGACACACCTATCTGCAGCAAAGAAGACA
CTGACCAGATTGCGAGCGGTGCTTTTGGATGCTCTGTAGCCACCCGGGGCCCAGGAGGACTGACTCGGCAGCAGGATTCGTGCATGGGAA
TCGGAGACCATGGCAGTGCAGCTGGTGCCCGACTCAGCTCTCGGCCTGCTGATGATGACGGAGGGCCGCCGATGTCAAGTACATCTTCTT
GATGACAGGAAGCTGGAACTCCTAGTACAGAGGAATTAAGGAATTTGCAAGAGCAAATGAAGGCCTTACAAGAGCAGCTAAAAGTAACAA
CAATTAAACAGACAGCAAGCCCAGCCCGTCTGCAAAAATCCCCTGAGAAGTCTCCCCGGCCACCTCTTAAGGAGAGGAGAGTTCAGAGAA
TTCAGGAGTCAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTCGAACACCAAAGGCTTCACCTC
CAGATCCCAAAAGCTCATCTTCAAGGATGACAAGTGCACCCTCCCAACCCCTACAGACGATTTCTCGGAACAAACCTAGTGGGATAACTA
GAGGTCAAATTGTGGGGACCCCAGGAAGTTCTGGGGAAACGACTCAACCCATCTGTGTGGAAGCCTTCTCTGGTCTGCGGCTCAGGCGGC
CTCGAGTATCCTCCACAGAAATGAACAAGAAAATGACCGGCCGAAAACTGATCAGACTGTCTCAGATCAAGGAAAAGATGGCCAGAGAGA
AGCTGGAAGAAATAGATTGGGTGACATTTGGGGTTATATTGAAGAAGGTTACGCCACAGAGTGTGAATAGTGGAAAAACCTTCAGCATAT
GGAAACTGAATGATCTTCGTGACCTGACACAATGTGTGTCCTTGTTCTTATTTGGAGAAGTTCACAAAGCGCTCTGGAAGACGGAGCAGG
GGACTGTCGTAGGGATCCTCAATGCCAACCCCATGAAGCCCAAGGATGGTTCAGAGGAGGTGTGTTTATCTATCGATCATCCTCAGAAGG
TCTTAATTATGGGTGAAGCTCTTGACCTGGGAACCTGTAAAGCCAAGAAGAAGAATGGAGAGCCGTGCACGCAGACTGTGAATTTGCGTG
ACTGTGAGTACTGTCAGTACCATGTCCAGGCTCAGTACAAGAAGCTCAGCGCAAAGCGTGCGGATCTGCAGTCCACCTTCTCTGGAGGAC
GAATTCCAAAGAAGTTTGCCCGCAGAGGCACCAGCCTCAAAGAACGGCTGTGCCAAGATGGCTTTTACTACGGAGGGGTTTCTTCTGCCT
CGTATGCAGCTTCAATTGCAGCAGCTGTGGCTCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTGTTAAGGGCACAAACTTGA
TCATCCAGGAAACACGGCAAAAACTCGGAATACCCCAGAAGAGCCTGTCTTGCTCTGAGGAGTTCAAGGAACTGATGGACCTGCCGACGT
GTGGAGCCAGGAACTTAAAACAACATTTAGCCAAAGCCACAGCTTCAGGGATTATGGGGAGCCCAAAACCAGCCATCAAGTCCATCTCGG
CCTCAGCACTCTTGAAGCAACAGAAGCAGCGGATGTTGGAGATGAGGAGAAGGAAATCAGAAGAAATACAGAAGCGATTTCTGCAGAGCT
CAAGTGAAGTTGAGAGCCCAGCTGTGCCATCTTCATCAAGACAGCCCCCTGCTCAGCCTCCACGGACAGGATCCGAGTTCCCCAGGCTGG
AGGGAGCCCCGGCCACAATGACGCCCAAGCTGGGGCGAGGTGTCTTGGAAGGAGATGATGTTCTCTTTTATGATGAGTCACCACCACCAA
GACCAAAACTGAGTGCTTTAGCAGAAGCCAAAAAGTTAGCTGCTATCACCAAATTAAGGGCAAAAGGCCAGGTTCTTACAAAAACAAACC
CAAACAGCATTAAGAAGAAACAAAAGGACCCTCAGGACATCCTGGAGGTGAAGGAACGTGTAGAAAAAAACACCATGTTTTCTTCTCAAG
CTGAGGATGAATTGGAGCCTGCCAGGAAAAAAAGGAGAGAACAACTTGCCTATCTGGAATCTGAGGAATTTCAGAAAATCCTAAAAGCAA
AATCAAAACACACAGGCATCCTGAAAGAGGCCGAGGCTGAGATGCAGGAGCGCTACTTTGAGCCACTGGTGAAAAAAGAACAAATGGAAG
AAAAGATGAGAAACATCAGAGAAGTGAAGTGCCGTGTCGTGACATGCAAGACGTGCGCCTATACCCACTTCAAGCTGCTGGAGACCTGCG
TCAGTGAGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGAAGCATCTCCTTGGACAGAC
TCCCGAACAAGCACTGCAGTAACTGTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGTATGCCATTTGCGTACTAATTTTTGAC
TCCTTTTAGTGACCCATGCTAATAATGTGGAACCATCTCCTATTAAAATATTTTCATTTTTCTAGGAAAAGACTGGTCCAAAGATAGGAG
GAGAAACTCTGTTACCAAGAGGAGAAGAACATGCTAAATTTCTGAACAGCCTTAAATAACCCGAACTTCAGACATTTTCCCACAGACTTC
CTGGCCTCCTGTGACTCTGGAAAGCAAAGGATTGGCTGTGTATTGTCCATTGATTCCTGATTGACGCCGTCAAAAACAAATGCTTGTTAA
GCCCATAAGCTTTGCCTGCTTACTTTCTGCCATTGGGTTGGTTTGATACCACATTTAACATTGACATTTAAGTGGAAAACCAAGTTATCA
TTGTCTTTTCTAAGCTCAGTGTGGATGATTGCATTACTTCATTCACTGAAGTTTTTGCCCAAAAATTGGAAGGTAAACAGAGAGCTATGT
TTCTGTATCTTTTGGTTATAGAGTGTTCACTTCTTTATCATAACAAAATTCTAGTGTTTATACGAACACCCAGAGGCAAAAGAATTTGGC
TTAATTCTCACTCCAGGTAAGTAGCTTAACTTCTGGGCTTCAGTTTTCTCATCTGTAAAATCAGGAAGATTGGACTAAGTGATCCTGAAA
TGTATTTTTTAGCACTGGATTTCTACAAATAATAAAACTTTCCCATCTAGATAATGATGATCACATAGTCTTGATGTACGGACATTAAAA
GCCAGATTTCTTCATTCAATTCTGTTATCTCTGTTTTACTCTTTGAAATTGATCAAGCCACTGAATCACTTTGCATTTCAGTTTATATAT
ATAGAGAGAAAGAAGGTGTCTGCTCTTACATTATTGTGGAGCCCTGTGATAGAAATATGTAAAATCTCATATTATTTTTTTTTTAATTTT
TTTATTTTTTATGACAGGGTCTCACTATGTCACCCTGGCTGGAGTGCAGTAGTGCGATCGCGGCACACTGCAGCCTTGGCTTCCCTGGGC
TCAAGCAGTCCTCCCACCTCAGTCTCCCAAATAGCTAGGACTACAGGCGTGCGTGACCAAGCCCAGCTAATTTTTGCATTTTTTGTAGAG
ATGGGGTTTTGCCATGTTGCTCAGGCTGGTCTCAAACTCCTGAGCACTAGCAATCCACCCACCTCTGTTTCCAAAAAAAAAAAAAAAATG
AAAGGTCAACCCCTATGCAAATTACCACAGCAAAGGTTTCATTCAGGAGATTCTTCCATCTGGGCAACCTGGTTTTCCAAATATCATTTG
ACCTAAGTGAATGTTGATACTAGCTAAAGATTGGGTAAATTGGTTGAATTATTGTATTGAAGCTTGAGCTGTAGCTAAAAGTAATTTAGG
TTTCCCCTAAGATGTTATTATGTTAGGGACATAACACTTTTGGGAGGTTGTTGTGGGAGATGGTTGATTTAGGTTTTCAAAAGCTAGAAA
TAAAATTTACATGCCTTAGATTTCATAAAATTCTGCTCTAATTGGGTGGAAGGTGCTGTATCTAACTTGTGTTCCTCCTAAGGTTATGTC
CTAATAACTATTCTTTTAGGAGTATACTTCTACTTTATAGAAGGTTGCTTTTCTTTTTAATTTTTTCTAACAAAGAAAAGAATAAAGTAT
TTATTAATAAGAACCAGAAAGCACTTGAAACTGATGTTTTTAATGGCTCATTTAGGGTAGATTTATTTATCTCATTAACTTAAAACAGCT
ATGTGTATGAAATAGGTCACAACAGAACTTGAACACCAGGTTGGTGTCTGAGCAATCCCTTTCTTATGGGAAAAACAATGTTCTTGTTTG
AACAGAGGGTATCATTGCAGTCAGTATTCACGTGTATATTGTTATATAAGTTGTATAATATGCTTGTAAAGGCTGAGGGTGAGCTGTATC

>31329_31329_1_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000378694_length(amino acids)=734AA_BP=
MQEQMKALQEQLKVTTIKQTASPARLQKSPEKSPRPPLKERRVQRIQESTCFSAELDVPALPRTKRVARTPKASPPDPKSSSSRMTSAPS
QPLQTISRNKPSGITRGQIVGTPGSSGETTQPICVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILK
KVTPQSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA
KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTSLKERLCQDGFYYGGVSSASYAASIAAAVAPKKK
IQTTLSNLVVKGTNLIIQETRQKLGIPQKSLSCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEM
RRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPRTGSEFPRLEGAPATMTPKLGRGVLEGDDVLFYDESPPPRPKLSALAEAKKLAA
ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAEDELEPARKKRREQLAYLESEEFQKILKAKSKHTGILKEAEAEM
QERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQHEYHWHDGVKRFFKCPCGNRSISLDRLPNKHCSNCGLYKWE

--------------------------------------------------------------
>31329_31329_2_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000378714_length(transcript)=4550nt_BP=480nt
GAACGCTCACAGAACAGGCAGTGCAATTCCATGTTCCTCTTAAGTATGTTAGCCCTACCGGGAGCTGAGCTGGCCAGTCTACTTGGAGAG
GAAAAGTAGATCTGGGGAAGGTGGAAGGGTCAGTTCCTAAGTGACTTCCTCCTCGGGGATGGTAAGGGCATTTGCTGATCTCCAGTGACT
GCCTGGTGCCTCATGGTCAGACTCGGCTGTCTCACTCCCAGATATCTGATTTTGCAAAAAGGGACACACCTATCTGCAGCAAAGAAGACA
CTGACCAGATTGCGAGCGGTGCTTTTGGATGCTCTGTAGCCACCCGGGGCCCAGGAGGACTGACTCGGCAGCAGGATTCGTGCATGGGAA
TCGGAGACCATGGCAGTGCAGCTGGTGCCCGACTCAGCTCTCGGCCTGCTGATGATGACGGAGGGCCGCCGATGTCAAGTACATCTTCTT
GATGACAGGAAGCTGGAACTCCTAGTACAGAGGAATTAAGGAATTTGCAAGAGCAAATGAAGGCCTTACAAGAGCAGCTAAAAGTAACAA
CAATTAAACAGACAGCAAGCCCAGCCCGTCTGCAAAAATCCCCTGAGAAGTCTCCCCGGCCACCTCTTAAGGAGAGGAGAGTTCAGAGAA
TTCAGGAGTCAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTCGAACACCAAAGGCTTCACCTC
CAGATCCCAAAAGCTCATCTTCAAGGATGACAAGTGCACCCTCCCAACCCCTACAGACGATTTCTCGGAACAAACCTAGTGGGATAACTA
GAGGTCAAATTGTGGGGACCCCAGGAAGTTCTGGGGAAACGACTCAACCCATCTGTGTGGAAGCCTTCTCTGGTCTGCGGCTCAGGCGGC
CTCGAGTATCCTCCACAGAAATGAACAAGAAAATGACCGGCCGAAAACTGATCAGACTGTCTCAGATCAAGGAAAAGATGGCCAGAGAGA
AGCTGGAAGAAATAGATTGGGTGACATTTGGGGTTATATTGAAGAAGGTTACGCCACAGAGTGTGAATAGTGGAAAAACCTTCAGCATAT
GGAAACTGAATGATCTTCGTGACCTGACACAATGTGTGTCCTTGTTCTTATTTGGAGAAGTTCACAAAGCGCTCTGGAAGACGGAGCAGG
GGACTGTCGTAGGGATCCTCAATGCCAACCCCATGAAGCCCAAGGATGGTTCAGAGGAGGTGTGTTTATCTATCGATCATCCTCAGAAGG
TCTTAATTATGGGTGAAGCTCTTGACCTGGGAACCTGTAAAGCCAAGAAGAAGAATGGAGAGCCGTGCACGCAGACTGTGAATTTGCGTG
ACTGTGAGTACTGTCAGTACCATGTCCAGGCTCAGTACAAGAAGCTCAGCGCAAAGCGTGCGGATCTGCAGTCCACCTTCTCTGGAGGAC
GAATTCCAAAGAAGTTTGCCCGCAGAGGCACCAGCCTCAAAGAACGGCTGTGCCAAGATGGCTTTTACTACGGAGGGGTTTCTTCTGCCT
CGTATGCAGCTTCAATTGCAGCAGCTGTGGCTCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTGTTAAGGGCACAAACTTGA
TCATCCAGGAAACACGGCAAAAACTCGGAATACCCCAGAAGAGCCTGTCTTGCTCTGAGGAGTTCAAGGAACTGATGGACCTGCCGACGT
GTGGAGCCAGGAACTTAAAACAACATTTAGCCAAAGCCACAGCTTCAGGGATTATGGGGAGCCCAAAACCAGCCATCAAGTCCATCTCGG
CCTCAGCACTCTTGAAGCAACAGAAGCAGCGGATGTTGGAGATGAGGAGAAGGAAATCAGAAGAAATACAGAAGCGATTTCTGCAGAGCT
CAAGTGAAGTTGAGAGCCCAGCTGTGCCATCTTCATCAAGACAGCCCCCTGCTCAGCCTCCACGGACAGGATCCGAGTTCCCCAGGCTGG
AGGGAGCCCCGGCCACAATGACGCCCAAGCTGGGGCGAGGTGTCTTGGAAGGAGATGATGTTCTCTTTTATGATGAGTCACCACCACCAA
GACCAAAACTGAGTGCTTTAGCAGAAGCCAAAAAGTTAGCTGCTATCACCAAATTAAGGGCAAAAGGCCAGGTTCTTACAAAAACAAACC
CAAACAGCATTAAGAAGAAACAAAAGGACCCTCAGGACATCCTGGAGGTGAAGGAACGTGTAGAAAAAAACACCATGTTTTCTTCTCAAG
CTGAGGATGAATTGGAGCCTGCCAGGAAAAAAAGGAGAGAACAACTTGCCTATCTGGAATCTGAGGAATTTCAGAAAATCCTAAAAGCAA
AATCAAAACACACAGGCATCCTGAAAGAGGCCGAGGCTGAGATGCAGGAGCGCTACTTTGAGCCACTGGTGAAAAAAGAACAAATGGAAG
AAAAGATGAGAAACATCAGAGAAGTGAAGTGCCGTGTCGTGACATGCAAGACGTGCGCCTATACCCACTTCAAGCTGCTGGAGACCTGCG
TCAGTGAGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGAAGCATCTCCTTGGACAGAC
TCCCGAACAAGCACTGCAGTAACTGTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGAAAAGACTGGTCCAAAGATAGGAGGAG
AAACTCTGTTACCAAGAGGAGAAGAACATGCTAAATTTCTGAACAGCCTTAAATAACCCGAACTTCAGACATTTTCCCACAGACTTCCTG
GCCTCCTGTGACTCTGGAAAGCAAAGGATTGGCTGTGTATTGTCCATTGATTCCTGATTGACGCCGTCAAAAACAAATGCTTGTTAAGCC
CATAAGCTTTGCCTGCTTACTTTCTGCCATTGGGTTGGTTTGATACCACATTTAACATTGACATTTAAGTGGAAAACCAAGTTATCATTG
TCTTTTCTAAGCTCAGTGTGGATGATTGCATTACTTCATTCACTGAAGTTTTTGCCCAAAAATTGGAAGGTAAACAGAGAGCTATGTTTC
TGTATCTTTTGGTTATAGAGTGTTCACTTCTTTATCATAACAAAATTCTAGTGTTTATACGAACACCCAGAGGCAAAAGAATTTGGCTTA
ATTCTCACTCCAGGTAAGTAGCTTAACTTCTGGGCTTCAGTTTTCTCATCTGTAAAATCAGGAAGATTGGACTAAGTGATCCTGAAATGT
ATTTTTTAGCACTGGATTTCTACAAATAATAAAACTTTCCCATCTAGATAATGATGATCACATAGTCTTGATGTACGGACATTAAAAGCC
AGATTTCTTCATTCAATTCTGTTATCTCTGTTTTACTCTTTGAAATTGATCAAGCCACTGAATCACTTTGCATTTCAGTTTATATATATA
GAGAGAAAGAAGGTGTCTGCTCTTACATTATTGTGGAGCCCTGTGATAGAAATATGTAAAATCTCATATTATTTTTTTTTTAATTTTTTT
ATTTTTTATGACAGGGTCTCACTATGTCACCCTGGCTGGAGTGCAGTAGTGCGATCGCGGCACACTGCAGCCTTGGCTTCCCTGGGCTCA
AGCAGTCCTCCCACCTCAGTCTCCCAAATAGCTAGGACTACAGGCGTGCGTGACCAAGCCCAGCTAATTTTTGCATTTTTTGTAGAGATG
GGGTTTTGCCATGTTGCTCAGGCTGGTCTCAAACTCCTGAGCACTAGCAATCCACCCACCTCTGTTTCCAAAAAAAAAAAAAAAATGAAA
GGTCAACCCCTATGCAAATTACCACAGCAAAGGTTTCATTCAGGAGATTCTTCCATCTGGGCAACCTGGTTTTCCAAATATCATTTGACC
TAAGTGAATGTTGATACTAGCTAAAGATTGGGTAAATTGGTTGAATTATTGTATTGAAGCTTGAGCTGTAGCTAAAAGTAATTTAGGTTT
CCCCTAAGATGTTATTATGTTAGGGACATAACACTTTTGGGAGGTTGTTGTGGGAGATGGTTGATTTAGGTTTTCAAAAGCTAGAAATAA
AATTTACATGCCTTAGATTTCATAAAATTCTGCTCTAATTGGGTGGAAGGTGCTGTATCTAACTTGTGTTCCTCCTAAGGTTATGTCCTA
ATAACTATTCTTTTAGGAGTATACTTCTACTTTATAGAAGGTTGCTTTTCTTTTTAATTTTTTCTAACAAAGAAAAGAATAAAGTATTTA
TTAATAAGAACCAGAAAGCACTTGAAACTGATGTTTTTAATGGCTCATTTAGGGTAGATTTATTTATCTCATTAACTTAAAACAGCTATG
TGTATGAAATAGGTCACAACAGAACTTGAACACCAGGTTGGTGTCTGAGCAATCCCTTTCTTATGGGAAAAACAATGTTCTTGTTTGAAC
AGAGGGTATCATTGCAGTCAGTATTCACGTGTATATTGTTATATAAGTTGTATAATATGCTTGTAAAGGCTGAGGGTGAGCTGTATCTGG

>31329_31329_2_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000378714_length(amino acids)=753AA_BP=
MQEQMKALQEQLKVTTIKQTASPARLQKSPEKSPRPPLKERRVQRIQESTCFSAELDVPALPRTKRVARTPKASPPDPKSSSSRMTSAPS
QPLQTISRNKPSGITRGQIVGTPGSSGETTQPICVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILK
KVTPQSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA
KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTSLKERLCQDGFYYGGVSSASYAASIAAAVAPKKK
IQTTLSNLVVKGTNLIIQETRQKLGIPQKSLSCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEM
RRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPRTGSEFPRLEGAPATMTPKLGRGVLEGDDVLFYDESPPPRPKLSALAEAKKLAA
ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAEDELEPARKKRREQLAYLESEEFQKILKAKSKHTGILKEAEAEM
QERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQHEYHWHDGVKRFFKCPCGNRSISLDRLPNKHCSNCGLYKWE

--------------------------------------------------------------
>31329_31329_3_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000484800_length(transcript)=3185nt_BP=480nt
GAACGCTCACAGAACAGGCAGTGCAATTCCATGTTCCTCTTAAGTATGTTAGCCCTACCGGGAGCTGAGCTGGCCAGTCTACTTGGAGAG
GAAAAGTAGATCTGGGGAAGGTGGAAGGGTCAGTTCCTAAGTGACTTCCTCCTCGGGGATGGTAAGGGCATTTGCTGATCTCCAGTGACT
GCCTGGTGCCTCATGGTCAGACTCGGCTGTCTCACTCCCAGATATCTGATTTTGCAAAAAGGGACACACCTATCTGCAGCAAAGAAGACA
CTGACCAGATTGCGAGCGGTGCTTTTGGATGCTCTGTAGCCACCCGGGGCCCAGGAGGACTGACTCGGCAGCAGGATTCGTGCATGGGAA
TCGGAGACCATGGCAGTGCAGCTGGTGCCCGACTCAGCTCTCGGCCTGCTGATGATGACGGAGGGCCGCCGATGTCAAGTACATCTTCTT
GATGACAGGAAGCTGGAACTCCTAGTACAGAGGAATTAAGGAATTTGCAAGAGCAAATGAAGGCCTTACAAGAGCAGCTAAAAGTAACAA
CAATTAAACAGACAGCAAGCCCAGCCCGTCTGCAAAAATCCCCTGTAGAGAAGTCTCCCCGGCCACCTCTTAAGGAGAGGAGAGTTCAGA
GAATTCAGGAGTCAACATGCTTTTCTGCGGAGCTTGATGTCCCTGCGCTACCAAGAACCAAGAGGGTGGCTCGAACACCAAAGGCTTCAC
CTCCAGATCCCAAAAGCTCATCTTCAAGGATGACAAGTGCACCCTCCCAACCCCTACAGACGATTTCTCGGAACAAACCTAGTGGGATAA
CTAGAGGTCAAATTGTGGGGACCCCAGGAAGTTCTGGGGAAACGACTCAACCCATCTGTGTGGAAGCCTTCTCTGGTCTGCGGCTCAGGC
GGCCTCGAGTATCCTCCACAGAAATGAACAAGAAAATGACCGGCCGAAAACTGATCAGACTGTCTCAGATCAAGGAAAAGATGGCCAGAG
AGAAGCTGGAAGAAATAGATTGGGTGACATTTGGGGTTATATTGAAGAAGGTTACGCCACAGAGTGTGAATAGTGGAAAAACCTTCAGCA
TATGGAAACTGAATGATCTTCGTGACCTGACACAATGTGTGTCCTTGTTCTTATTTGGAGAAGTTCACAAAGCGCTCTGGAAGACGGAGC
AGGGGACTGTCGTAGGGATCCTCAATGCCAACCCCATGAAGCCCAAGGATGGTTCAGAGGAGGTGTGTTTATCTATCGATCATCCTCAGA
AGGTCTTAATTATGGGTGAAGCTCTTGACCTGGGAACCTGTAAAGCCAAGAAGAAGAATGGAGAGCCGTGCACGCAGACTGTGAATTTGC
GTGACTGTGAGTACTGTCAGTACCATGTCCAGGCTCAGTACAAGAAGCTCAGCGCAAAGCGTGCGGATCTGCAGTCCACCTTCTCTGGAG
GACGAATTCCAAAGAAGTTTGCCCGCAGAGGCACCAGCCTCAAAGAACGGCTGTGCCAAGATGGCTTTTACTACGGAGGGGTTTCTTCTG
CCTCGTATGCAGCTTCAATTGCAGCAGCTGTGGCTCCTAAGAAGAAGATTCAAACCACTCTGAGTAATCTGGTTGTTAAGGGCACAAACT
TGATCATCCAGGAAACACGGCAAAAACTCGGAATACCCCAGAAGAGCCTGTCTTGCTCTGAGGAGTTCAAGGAACTGATGGACCTGCCGA
CGTGTGGAGCCAGGAACTTAAAACAACATTTAGCCAAAGCCACAGCTTCAGGGATTATGGGGAGCCCAAAACCAGCCATCAAGTCCATCT
CGGCCTCAGCACTCTTGAAGCAACAGAAGCAGCGGATGTTGGAGATGAGGAGAAGGAAATCAGAAGAAATACAGAAGCGATTTCTGCAGA
GCTCAAGTGAAGTTGAGAGCCCAGCTGTGCCATCTTCATCAAGACAGCCCCCTGCTCAGCCTCCACGGACAGGATCCGAGTTCCCCAGGC
TGGAGGGAGCCCCGGCCACAATGACGCCCAAGCTGGGGCGAGGTGTCTTGGAAGGAGATGATGTTCTCTTTTATGATGAGTCACCACCAC
CAAGACCAAAACTGAGTGCTTTAGCAGAAGCCAAAAAGTTAGCTGCTATCACCAAATTAAGGGCAAAAGGCCAGGTTCTTACAAAAACAA
ACCCAAACAGCATTAAGAAGAAACAAAAGGACCCTCAGGACATCCTGGAGGTGAAGGAACGTGTAGAAAAAAACACCATGTTTTCTTCTC
AAGCTGAGGATGAATTGGAGCCTGCCAGGAAAAAAAGGAGAGAACAACTTGCCTATCTGGAATCTGAGGAATTTCAGAAAATCCTAAAAG
CAAAATCAAAACACACAGGCATCCTGAAAGAGGCCGAGGCTGAGATGCAGGAGCGCTACTTTGAGCCACTGGTGAAAAAAGAACAAATGG
AAGAAAAGATGAGAAACATCAGAGAAGTGAAGTGCCGTGTCGTGACATGCAAGACGTGCGCCTATACCCACTTCAAGCTGCTGGAGACCT
GCGTCAGTGAGCAGCATGAATACCACTGGCATGATGGTGTGAAGAGGTTTTTCAAATGTCCCTGTGGAAACAGAAGCATCTCCTTGGACA
GACTCCCGAACAAGCACTGCAGTAACTGTGGCCTCTACAAATGGGAACGGGACGGAATGCTAAAGGAAAAGACTGGTCCAAAGATAGGAG
GAGAAACTCTGTTACCAAGAGGAGAAGAACATGCTAAATTTCTGAACAGCCTTAAATAACCCGAACTTCAGACATTTTCCCACAGACTTC
CTGGCCTCCTGTGACTCTGGAAAGCAAAGGATTGGCTGTGTATTGTCCATTGATTCCTGATTGACGCCGTCAAAAACAAATGCTTGTTAA
GCCCATAAGCTTTGCCTGCTTACTTTCTGCCATTGGGTTGGTTTGATACCACATTTAACATTGACATTTAAGTGGAAAACCAAGTTATCA
TTGTCTTTTCTAAGCTCAGTGTGGATGATTGCATTACTTCATTCACTGAAGTTTTTGCCCAAAAATTGGAAGGTAAACAGAGAGCTATGT
TTCTGTATCTTTTGGTTATAGAGTGTTCACTTCTTTATCATAACAAAATTCTAGTGTTTATACGAACACCCAGAGGCAAAAGAATTTGGC

>31329_31329_3_FRMD4A-MCM10_FRMD4A_chr10_13900847_ENST00000357447_MCM10_chr10_13214376_ENST00000484800_length(amino acids)=754AA_BP=
MQEQMKALQEQLKVTTIKQTASPARLQKSPVEKSPRPPLKERRVQRIQESTCFSAELDVPALPRTKRVARTPKASPPDPKSSSSRMTSAP
SQPLQTISRNKPSGITRGQIVGTPGSSGETTQPICVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVIL
KKVTPQSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCK
AKKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTSLKERLCQDGFYYGGVSSASYAASIAAAVAPKK
KIQTTLSNLVVKGTNLIIQETRQKLGIPQKSLSCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLE
MRRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPRTGSEFPRLEGAPATMTPKLGRGVLEGDDVLFYDESPPPRPKLSALAEAKKLA
AITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAEDELEPARKKRREQLAYLESEEFQKILKAKSKHTGILKEAEAE
MQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQHEYHWHDGVKRFFKCPCGNRSISLDRLPNKHCSNCGLYKW

--------------------------------------------------------------

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Fusion Gene PPI Analysis for FRMD4A-MCM10


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FRMD4A-MCM10


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for FRMD4A-MCM10


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource