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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:FRMD4B-ABCA5 (FusionGDB2 ID:31338)

Fusion Gene Summary for FRMD4B-ABCA5

check button Fusion gene summary
Fusion gene informationFusion gene name: FRMD4B-ABCA5
Fusion gene ID: 31338
HgeneTgene
Gene symbol

FRMD4B

ABCA5

Gene ID

23150

23461

Gene nameFERM domain containing 4BATP binding cassette subfamily A member 5
Synonyms6030440G05Rik|GRSP1ABC13|EST90625|HTC3
Cytomap

3p14.1

17q24.3

Type of geneprotein-codingprotein-coding
DescriptionFERM domain-containing protein 4BGRP1-binding protein GRSP1ATP-binding cassette sub-family A member 5ATP-binding cassette A5ATP-binding cassette, sub-family A (ABC1), member 5
Modification date2020031320200313
UniProtAcc

Q9Y2L6

Q8WWZ7

Ensembl transtripts involved in fusion geneENST00000398540, ENST00000542259, 
ENST00000478263, ENST00000497757, 
ENST00000589609, ENST00000392676, 
ENST00000392677, ENST00000588877, 
Fusion gene scores* DoF score13 X 10 X 8=10405 X 6 X 3=90
# samples 145
** MAII scorelog2(14/1040*10)=-2.89308479608349
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(5/90*10)=-0.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: FRMD4B [Title/Abstract] AND ABCA5 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointFRMD4B(69336903)-ABCA5(67252424), # samples:3
Anticipated loss of major functional domain due to fusion event.FRMD4B-ABCA5 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
FRMD4B-ABCA5 seems lost the major protein functional domain in Tgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across FRMD4B (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across ABCA5 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4SKCMTCGA-WE-A8ZR-06AFRMD4Bchr3

69336903

-ABCA5chr17

67252424

-


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Fusion Gene ORF analysis for FRMD4B-ABCA5

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000398540ENST00000589609FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
5CDS-intronENST00000542259ENST00000589609FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
Frame-shiftENST00000398540ENST00000392676FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
Frame-shiftENST00000398540ENST00000392677FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
Frame-shiftENST00000398540ENST00000588877FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
In-frameENST00000542259ENST00000392676FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
In-frameENST00000542259ENST00000392677FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
In-frameENST00000542259ENST00000588877FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000478263ENST00000392676FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000478263ENST00000392677FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000478263ENST00000588877FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000497757ENST00000392676FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000497757ENST00000392677FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-3CDSENST00000497757ENST00000588877FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-intronENST00000478263ENST00000589609FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-
intron-intronENST00000497757ENST00000589609FRMD4Bchr3

69336903

-ABCA5chr17

67252424

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000542259FRMD4Bchr369336903-ENST00000392676ABCA5chr1767252424-52157917681988406
ENST00000542259FRMD4Bchr369336903-ENST00000392677ABCA5chr1767252424-50917917681988406
ENST00000542259FRMD4Bchr369336903-ENST00000588877ABCA5chr1767252424-25757917681988406

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000542259ENST00000392676FRMD4Bchr369336903-ABCA5chr1767252424-0.000172050.99982786
ENST00000542259ENST00000392677FRMD4Bchr369336903-ABCA5chr1767252424-0.000172780.9998272
ENST00000542259ENST00000588877FRMD4Bchr369336903-ABCA5chr1767252424-0.000884450.9991155

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Fusion Genomic Features for FRMD4B-ABCA5


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for FRMD4B-ABCA5


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:69336903/chr17:67252424)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
FRMD4B

Q9Y2L6

ABCA5

Q8WWZ7

FUNCTION: Member of GRP1 signaling complexes that are acutely recruited to plasma membrane ruffles in response to insulin receptor signaling. May function as a scaffolding protein that regulates epithelial cell polarity by connecting ARF6 activation with the PAR3 complex. Plays a redundant role with FRMD4A in epithelial polarization. {ECO:0000250|UniProtKB:Q920B0}.FUNCTION: Cholesterol efflux transporter in macrophages that is responsible for APOAI/high-density lipoproteins (HDL) formation at the plasma membrane under high cholesterol levels and participates in reverse cholesterol transport (PubMed:25125465). May play a role in the processing of autolysosomes (By similarity). {ECO:0000250|UniProtKB:Q8K448, ECO:0000269|PubMed:25125465}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391290_153312431643.0DomainABC transporter 2
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381290_153312431643.0DomainABC transporter 2
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391333_134012431643.0Nucleotide bindingATP 2
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381333_134012431643.0Nucleotide bindingATP 2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneFRMD4Bchr3:69336903chr17:67252424ENST00000398540-523417_4501671035.0Coiled coilOntology_term=ECO:0000255
HgeneFRMD4Bchr3:69336903chr17:67252424ENST00000398540-523531_5611671035.0Coiled coilOntology_term=ECO:0000255
HgeneFRMD4Bchr3:69336903chr17:67252424ENST00000398540-52359_3611671035.0DomainFERM
HgeneFRMD4Bchr3:69336903chr17:67252424ENST00000398540-523542_9711671035.0RegionNecessary for adherens junction and tight junction localization
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739478_71312431643.0DomainABC transporter 1
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638478_71312431643.0DomainABC transporter 1
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739514_52112431643.0Nucleotide bindingATP 1
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638514_52112431643.0Nucleotide bindingATP 1
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391021_104112431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391071_109112431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391102_112212431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391139_115912431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391169_118912431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000039267627391207_122712431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739220_24012431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739264_28412431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739297_31712431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739328_34812431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST00000392676273932_5212431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739355_37512431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739396_41612431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739866_88612431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000003926762739967_98712431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381021_104112431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381071_109112431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381102_112212431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381139_115912431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381169_118912431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST0000058887726381207_122712431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638220_24012431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638264_28412431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638297_31712431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638328_34812431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST00000588877263832_5212431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638355_37512431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638396_41612431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638866_88612431643.0TransmembraneHelical
TgeneABCA5chr3:69336903chr17:67252424ENST000005888772638967_98712431643.0TransmembraneHelical


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Fusion Gene Sequence for FRMD4B-ABCA5


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>31338_31338_1_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000392676_length(transcript)=5215nt_BP=791nt
CGAGGGCCAGCTTGGTGGAGCTTAGCACAGCTTGCTCGGCGCTGCGAGCGGGCGGGGGTGGACACTGGGCTTCTGTGTGCCAGTCGCAGC
CGTTGGCTGGCGGGCACCCAATCCCAGGGCATGCCGCCGGAGCCTGGCCAGGACGCACGGTGAAAGACGAGTTTGGTGGCAGGCTTGACC
CCCCGGCTGCCAGCAGAAGCCGGCGTCGGGAGCCCAGGCGGGCAGGCCGCTGGGGTCGGGGCTGCACGTACGAGAGCCGGGACGCCCGGG
TTCAGAGCGAAGGAGGAGGCATGGCTTCGGTGTTCATGTGTGGCGTGGAGGACCTGCTGTTCAGCGGCAGCCGCTTCGTATGGAACTTGA
CCGTGTCCACGCTGCGGAGATGGTACACGGAGAGGCTGCGGGCTTGCCACCAGGTGCTGCGGACGTGGTGCGGGCTGCAGGACGTGTACC
AGATGACAGAAGGCAGGCACTGCCAGGTGCACCTCCTGGATGATAGGAGACTGGAGCTGCTGGTTCAGCCCAAACTTCTAGCAAGAGAGT
TGCTGGACCTAGTGGCTTCACATTTCAACCTGAAAGAAAAGGAGTATTTTGGAATAACATTCATAGATGACACAGGTCAGCAGAACTGGC
TGCAGTTAGATCACCGAGTTCTTGACCACGATTTGCCCAAGAAACCAGGCCCAACCATTTTGCACTTTGCTGTGAGGTTTTACATTGAGA
GCATATCGTTTTTAAAGGATAAAACCACCGTGGAGCTGTTTTTCCTGAATGCAAAGGCCTGTGTGCACAAGAAACCTTTCAACGAAGTCT
AAAAATAGGAAGCTTCCAGAACCACCAGACAATGAGGATGAAGATGAAGATGTCAAAGCTGAAAGACTAAAGGTCAAAGAGCTGATGGGT
TGCCAGTGTTGTGAGGAGAAACCATCCATTATGGTCAGCAATTTGCATAAAGAATATGATGACAAGAAAGATTTTCTTCTTTCAAGAAAA
GTAAAGAAAGTGGCAACTAAATACATCTCTTTCTGTGTGAAAAAAGGAGAGATCTTAGGACTATTGGGTCCAAATGGTGCTGGCAAAAGC
ACAATTATTAATATTCTGGTTGGTGATATTGAACCAACTTCAGGCCAGGTATTTTTAGGAGATTATTCTTCAGAGACAAGTGAAGATGAT
GATTCACTGAAGTGTATGGGTTACTGTCCTCAGATAAACCCTTTGTGGCCAGATACTACATTGCAGGAACATTTTGAAATTTATGGAGCT
GTCAAAGGAATGAGTGCAAGTGACATGAAAGAAGTCATAAGTCGAATAACACATGCACTTGATTTAAAAGAACATCTTCAGAAGACTGTA
AAGAAACTACCTGCAGGAATCAAACGAAAGTTGTGTTTTGCTCTAAGTATGCTAGGGAATCCTCAGATTACTTTGCTAGATGAACCATCT
ACAGGTATGGATCCCAAAGCCAAACAGCACATGTGGCGAGCAATTCGAACTGCATTTAAAAACAGAAAGCGGGCTGCTATTCTGACCACT
CACTATATGGAGGAGGCAGAGGCTGTCTGTGATCGAGTAGCTATCATGGTGTCTGGGCAGTTAAGATGTATCGGAACAGTACAACATCTA
AAGAGTAAATTTGGAAAAGGCTACTTTTTGGAAATTAAATTGAAGGACTGGATAGAAAACCTAGAAGTAGACCGCCTTCAAAGAGAAATT
CAGTATATTTTCCCAAATGCAAGCCGTCAGGAAAGTTTTTCTTCTATTTTGGCTTATAAAATTCCTAAGGAAGATGTTCAGTCCCTTTCA
CAATCTTTTTTTAAGCTGGAAGAAGCTAAACATGCTTTTGCCATTGAAGAATATAGCTTTTCTCAAGCAACATTGGAACAGGTTTTTGTA
GAACTCACTAAAGAACAAGAGGAGGAAGATAATAGTTGTGGAACTTTAAACAGCACACTTTGGTGGGAACGAACACAAGAAGATAGAGTA
GTATTTTGAATTTGTATTGTTCGGTCTGCTTACTGGGACTTCTTTCTTTTTCACTTAATTTTAACTTTGGTTTAAAAAGTTTTTTATTGG
AATGGTAACTGGAGAACCAAGAACGCACTTGAAATTTTTCTAAGCTCCTTAATTGAAATGCTGTGGTTGTGTGTTTTGCTTTTCTTTAAA
TAAAACGTATGTATAATTAAGTGAAGCTGCATGTTTGTATTGAAGTATATTGAACTATATAGTTTGTATGTCATCTTTTTCACCATTCAG
AAACAGTGCTTCTGAATTTGTGATTTAAAGGAATTGTAATAGAATAGTTTTATTTTTAAGTTATCTTTAAGTTTATGCCATCTTCTTAAA
TAAGTACGTAATGTTCCAATCTAAATAAAAAACTAATTCATAACTAATGCATAGAAAAGATACATAAAGCAATGTGAAAGTTTCTTGCTT
CTCCTTTTTAATTTCTAAAAAAGCCACTTTGAATGGAAGTTGTCATCCGTAAAAGCTGAAGTGTAAGCACTAGGAAATCTCAATATAGAG
ATTTGAGGAAAGTTATATCCACTAGGTGGCAGTCATTGATCATAATAAGTGAAATGAGCCCTTGTTCTAGTACATGATTTTAGGCTTAGG
TAATTAGGTATGTGAAATTACATTTCTTTAATTTAAAGTAAAATTCAGAAGGTTTTAGTTATTATAATTAAAGGAAGACTGTGTGTAGAA
TCTTACGTAATAGTCTGATTCTTTGACTCTGTGGCTAGAATGACAGTTATCTATGGAGGTGGTAGAATTAAGCCATACCTTTTCCTTCAT
CACTCTTGGAACATATAAATTTTTTGTCATCTTCCTTGCAAAGGGCACATTTAATTTTGTTCTTGAATAAAATATTTTATTGGGTATTTG
TTTTTATTGGTAAACTTTAGTGAATCTCTTCTATAAAATTGTAAGTAGATCAGTGTGTAGATTTATTTAGTAACTTACCTCATTGACTTT
GGAACATGGTAGGATATGAATAAACTCTTTCAAGGGTTAAATTAAGAATTGTAAGTGCAGTGCGCCTATTTCTTTTTAATAAGAACCAGA
ATTTCATTTTTGATAGAGTTAAAGGCATGGCTAATATTTTCTTAGAAATACTTCCTTGTACAACCCATGTATTGGCTCAAGGTATAAAAT
AGTGTAAATAATGCTAGTTGACATTACATTTCAACCAAATGAAAGTATTAACTTCATAAAACAAATATATTGAGAGTGTGATTATTGTAT
TAGACAACAACAACAGCAATGACAGAAGGATTTGGTACTGAATTACTTTAAATAAGCAAAACCTTTCAGTGGCATTATTCATTCTTTAAT
GTAGGCAAAATTTAATGAACTTTTAGCTTTATTGTGTAATAAGACATCTGTGATTTTAGGCTCTAGCAGTGGATTTAAAAGTGTTCTTTC
TCGGTACAAAGTACGTGGCTGATATTTTCCCCCATTGCTGGGGGCAGTTGCTATACACTTTCCTAAAGTATATATAATGTTCACATAAAT
ACCCAGGGACCTCTTTTTTGGGATGTGCTTTTGTAATTATGTGTAACCTTGAATACTTAAGTTTAGTAAAAGCAACAAAATTATATCTAT
AGTTTACTAAGGCAGTCACGAAAAAGCATAGTTTTTTTTAGAACCTGACCATCCTAAGAAAGTTATGTCATCTGAAGATAGAGCATGACT
AATGAAGAAAATTACCTGCTTTTGCACGTAGATTTGGTAACTTTCACTTTACATTTGTGAATGTGTAATTGGTGCAAAGTAAATTTTTTT
TCCTGCAAAGTGAAAGTTGAGTAGTCACAATCATGTTATTTATTTTGTTCATTTAGTTACTTTGCTTTTAATGTATATGAATACATGCTC
TTGTAAACAATTTTAAAAGACATTCAAATTTTTTTTTAGTTTTTATATACTCAGAATATATTTTGGTTGTTAAATTAAATTATGTTCCCT
TTTTCACAGTAACAAAATCTGACTCAGGAGAAATATAACTTAATTCTTAGGAAAACAAGGGTAAGTGAGCTGGAAAGCAAAGGAGGCAAA
AAGTGAAATATATTTATTTACAGTGTACAGTTCATGTTTATGAACATACTAATTTTAAAATGTCTTAAATTACTGATCTCAAAACTTTTT
TCTATGTCAGTACAGATAAATAAATAAATATACATATTAGGCAAAAGCAACATCACCAACCTTATATTTCCCATTCATGGTCAAATTTTC
AAAGGAAAGTAAAAGCTGAGCTTTACTGAGTGAGTGTTTACTGACTAATAAGGCAAGAAAAAACATGATGAGTGTACTTTACATCTTACT
TTTGTGGGCTCTTAATTTTTTTCTCTAGTTTGTTTTCAGTAAAGACAGTGGGTTTTCTTTAAAATAATTTTTTTCTTTTAAATTTGCACA
AATTATCTTAGGTCAGTATTTTGGTTTTAATCATTAAAACATTTTTAGAGTAATGTAATTTAACAAATATTTTAAGTGATTATGTTTCCA
GAAATGGATTCTTTGGAGAGAACTCGGATGACTATCAGTTTTGGCCCTGTAAGATCGTGGAGATCTGTAAGATAGATACTTATATAACTT
ACATAAAATATATATAATATATTACTTATATAACTTATATAACTAGCTATTATTTTATATAACTAACTATAATATGACAAATCCTTTGCT
AGTAGTACTAACAACGTTTTATAGGAGCACAATTAATTTTACTTAGGATAAGTGTTGTTATTATTGTTTTTATTGTTGTTCTGTTAGTTA
CTCAAAACTTCATTCTAATTGTGCCCTGAGTTTGTTAAAATACCATACTGTATTTTTGTGTAACATGTAAATAGGCATTAATTTTTGAGA
AATAGAAATGTTTATCCTTAATGTATTTTTAATTTGCTAACATTGATTTTTTATTTTCTTTCCTGAAATAGCTTATTTCCTAAAATGAAA
GAATTTATTCTCAGATGAATAATTTTTATATCAGCTATTCTTATCAGGTAAAAGTTTAATTATTTTTTATTTATAATATATGTAAGCAAT
TCTCAATGCTGCTCTTTAAGAAAAATAAATATGATTATATTAATAATAAGCTTTAAGAGTTGAAAATTTAAGACAAGTCATTTTGTATAC

>31338_31338_1_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000392676_length(amino acids)=406AA_BP=7
MQRPVCTRNLSTKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEEKPSIMVSNLHKEYDDKKDFLLSRKVKKVATKYISFCVKKG
EILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYSSETSEDDDSLKCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRI
THALDLKEHLQKTVKKLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKNRKRAAILTTHYMEEAEAVCDRVAIM
VSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEVDRLQREIQYIFPNASRQESFSSILAYKIPKEDVQSLSQSFFKLEEAKHAFAIE

--------------------------------------------------------------
>31338_31338_2_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000392677_length(transcript)=5091nt_BP=791nt
CGAGGGCCAGCTTGGTGGAGCTTAGCACAGCTTGCTCGGCGCTGCGAGCGGGCGGGGGTGGACACTGGGCTTCTGTGTGCCAGTCGCAGC
CGTTGGCTGGCGGGCACCCAATCCCAGGGCATGCCGCCGGAGCCTGGCCAGGACGCACGGTGAAAGACGAGTTTGGTGGCAGGCTTGACC
CCCCGGCTGCCAGCAGAAGCCGGCGTCGGGAGCCCAGGCGGGCAGGCCGCTGGGGTCGGGGCTGCACGTACGAGAGCCGGGACGCCCGGG
TTCAGAGCGAAGGAGGAGGCATGGCTTCGGTGTTCATGTGTGGCGTGGAGGACCTGCTGTTCAGCGGCAGCCGCTTCGTATGGAACTTGA
CCGTGTCCACGCTGCGGAGATGGTACACGGAGAGGCTGCGGGCTTGCCACCAGGTGCTGCGGACGTGGTGCGGGCTGCAGGACGTGTACC
AGATGACAGAAGGCAGGCACTGCCAGGTGCACCTCCTGGATGATAGGAGACTGGAGCTGCTGGTTCAGCCCAAACTTCTAGCAAGAGAGT
TGCTGGACCTAGTGGCTTCACATTTCAACCTGAAAGAAAAGGAGTATTTTGGAATAACATTCATAGATGACACAGGTCAGCAGAACTGGC
TGCAGTTAGATCACCGAGTTCTTGACCACGATTTGCCCAAGAAACCAGGCCCAACCATTTTGCACTTTGCTGTGAGGTTTTACATTGAGA
GCATATCGTTTTTAAAGGATAAAACCACCGTGGAGCTGTTTTTCCTGAATGCAAAGGCCTGTGTGCACAAGAAACCTTTCAACGAAGTCT
AAAAATAGGAAGCTTCCAGAACCACCAGACAATGAGGATGAAGATGAAGATGTCAAAGCTGAAAGACTAAAGGTCAAAGAGCTGATGGGT
TGCCAGTGTTGTGAGGAGAAACCATCCATTATGGTCAGCAATTTGCATAAAGAATATGATGACAAGAAAGATTTTCTTCTTTCAAGAAAA
GTAAAGAAAGTGGCAACTAAATACATCTCTTTCTGTGTGAAAAAAGGAGAGATCTTAGGACTATTGGGTCCAAATGGTGCTGGCAAAAGC
ACAATTATTAATATTCTGGTTGGTGATATTGAACCAACTTCAGGCCAGGTATTTTTAGGAGATTATTCTTCAGAGACAAGTGAAGATGAT
GATTCACTGAAGTGTATGGGTTACTGTCCTCAGATAAACCCTTTGTGGCCAGATACTACATTGCAGGAACATTTTGAAATTTATGGAGCT
GTCAAAGGAATGAGTGCAAGTGACATGAAAGAAGTCATAAGTCGAATAACACATGCACTTGATTTAAAAGAACATCTTCAGAAGACTGTA
AAGAAACTACCTGCAGGAATCAAACGAAAGTTGTGTTTTGCTCTAAGTATGCTAGGGAATCCTCAGATTACTTTGCTAGATGAACCATCT
ACAGGTATGGATCCCAAAGCCAAACAGCACATGTGGCGAGCAATTCGAACTGCATTTAAAAACAGAAAGCGGGCTGCTATTCTGACCACT
CACTATATGGAGGAGGCAGAGGCTGTCTGTGATCGAGTAGCTATCATGGTGTCTGGGCAGTTAAGATGTATCGGAACAGTACAACATCTA
AAGAGTAAATTTGGAAAAGGCTACTTTTTGGAAATTAAATTGAAGGACTGGATAGAAAACCTAGAAGTAGACCGCCTTCAAAGAGAAATT
CAGTATATTTTCCCAAATGCAAGCCGTCAGGAAAGTTTTTCTTCTATTTTGGCTTATAAAATTCCTAAGGAAGATGTTCAGTCCCTTTCA
CAATCTTTTTTTAAGCTGGAAGAAGCTAAACATGCTTTTGCCATTGAAGAATATAGCTTTTCTCAAGCAACATTGGAACAGGTTTTTGTA
GAACTCACTAAAGAACAAGAGGAGGAAGATAATAGTTGTGGAACTTTAAACAGCACACTTTGGTGGGAACGAACACAAGAAGATAGAGTA
GTATTTTGAATTTGTATTGTTCGGTCTGCTTACTGGGACTTCTTTCTTTTTCACTTAATTTTAACTTTGGTTTAAAAAGTTTTTTATTGG
AATGGTAACTGGAGAACCAAGAACGCACTTGAAATTTTTCTAAGCTCCTTAATTGAAATGCTGTGGTTGTGTGTTTTGCTTTTCTTTAAA
TAAAACGTATGTATAATTAAGTGAAGCTGCATGTTTGTATTGAAGTATATTGAACTATATAGTTTGTATGTCATCTTTTTCACCATTCAG
AAACAGTGCTTCTGAATTTGTGATTTAAAGGAATTGTAATAGAATAGTTTTATTTTTAAGTTATCTTTAAGTTTATGCCATCTTCTTAAA
TAAGTACGTAATGTTCCAATCTAAATAAAAAACTAATTCATAACTAATGCATAGAAAAGATACATAAAGCAATGTGAAAGTTTCTTGCTT
CTCCTTTTTAATTTCTAAAAAAGCCACTTTGAATGGAAGTTGTCATCCGTAAAAGCTGAAGTGTAAGCACTAGGAAATCTCAATATAGAG
ATTTGAGGAAAGTTATATCCACTAGGTGGCAGTCATTGATCATAATAAGTGAAATGAGCCCTTGTTCTAGTACATGATTTTAGGCTTAGG
TAATTAGGTATGTGAAATTACATTTCTTTAATTTAAAGTAAAATTCAGAAGGTTTTAGTTATTATAATTAAAGGAAGACTGTGTGTAGAA
TCTTACGTAATAGTCTGATTCTTTGACTCTGTGGCTAGAATGACAGTTATCTATGGAGGTGGTAGAATTAAGCCATACCTTTTCCTTCAT
CACTCTTGGAACATATAAATTTTTTGTCATCTTCCTTGCAAAGGGCACATTTAATTTTGTTCTTGAATAAAATATTTTATTGGGTATTTG
TTTTTATTGGTAAACTTTAGTGAATCTCTTCTATAAAATTGTAAGTAGATCAGTGTGTAGATTTATTTAGTAACTTACCTCATTGACTTT
GGAACATGGTAGGATATGAATAAACTCTTTCAAGGGTTAAATTAAGAATTGTAAGTGCAGTGCGCCTATTTCTTTTTAATAAGAACCAGA
ATTTCATTTTTGATAGAGTTAAAGGCATGGCTAATATTTTCTTAGAAATACTTCCTTGTACAACCCATGTATTGGCTCAAGGTATAAAAT
AGTGTAAATAATGCTAGTTGACATTACATTTCAACCAAATGAAAGTATTAACTTCATAAAACAAATATATTGAGAGTGTGATTATTGTAT
TAGACAACAACAACAGCAATGACAGAAGGATTTGGTACTGAATTACTTTAAATAAGCAAAACCTTTCAGTGGCATTATTCATTCTTTAAT
GTAGGCAAAATTTAATGAACTTTTAGCTTTATTGTGTAATAAGACATCTGTGATTTTAGGCTCTAGCAGTGGATTTAAAAGTGTTCTTTC
TCGGTACAAAGTACGTGGCTGATATTTTCCCCCATTGCTGGGGGCAGTTGCTATACACTTTCCTAAAGTATATATAATGTTCACATAAAT
ACCCAGGGACCTCTTTTTTGGGATGTGCTTTTGTAATTATGTGTAACCTTGAATACTTAAGTTTAGTAAAAGCAACAAAATTATATCTAT
AGTTTACTAAGGCAGTCACGAAAAAGCATAGTTTTTTTTAGAACCTGACCATCCTAAGAAAGTTATGTCATCTGAAGATAGAGCATGACT
AATGAAGAAAATTACCTGCTTTTGCACGTAGATTTGGTAACTTTCACTTTACATTTGTGAATGTGTAATTGGTGCAAAGTAAATTTTTTT
TCCTGCAAAGTGAAAGTTGAGTAGTCACAATCATGTTATTTATTTTGTTCATTTAGTTACTTTGCTTTTAATGTATATGAATACATGCTC
TTGTAAACAATTTTAAAAGACATTCAAATTTTTTTTTAGTTTTTATATACTCAGAATATATTTTGGTTGTTAAATTAAATTATGTTCCCT
TTTTCACAGTAACAAAATCTGACTCAGGAGAAATATAACTTAATTCTTAGGAAAACAAGGGTAAGTGAGCTGGAAAGCAAAGGAGGCAAA
AAGTGAAATATATTTATTTACAGTGTACAGTTCATGTTTATGAACATACTAATTTTAAAATGTCTTAAATTACTGATCTCAAAACTTTTT
TCTATGTCAGTACAGATAAATAAATAAATATACATATTAGGCAAAAGCAACATCACCAACCTTATATTTCCCATTCATGGTCAAATTTTC
AAAGGAAAGTAAAAGCTGAGCTTTACTGAGTGAGTGTTTACTGACTAATAAGGCAAGAAAAAACATGATGAGTGTACTTTACATCTTACT
TTTGTGGGCTCTTAATTTTTTTCTCTAGTTTGTTTTCAGTAAAGACAGTGGGTTTTCTTTAAAATAATTTTTTTCTTTTAAATTTGCACA
AATTATCTTAGGTCAGTATTTTGGTTTTAATCATTAAAACATTTTTAGAGTAATGTAATTTAACAAATATTTTAAGTGATTATGTTTCCA
GAAATGGATTCTTTGGAGAGAACTCGGATGACTATCAGTTTTGGCCCTGTAAGATCGTGGAGATCTGTAAGATAGATACTTATATAACTT
ACATAAAATATATATAATATATTACTTATATAACTTATATAACTAGCTATTATTTTATATAACTAACTATAATATGACAAATCCTTTGCT
AGTAGTACTAACAACGTTTTATAGGAGCACAATTAATTTTACTTAGGATAAGTGTTGTTATTATTGTTTTTATTGTTGTTCTGTTAGTTA
CTCAAAACTTCATTCTAATTGTGCCCTGAGTTTGTTAAAATACCATACTGTATTTTTGTGTAACATGTAAATAGGCATTAATTTTTGAGA
AATAGAAATGTTTATCCTTAATGTATTTTTAATTTGCTAACATTGATTTTTTATTTTCTTTCCTGAAATAGCTTATTTCCTAAAATGAAA
GAATTTATTCTCAGATGAATAATTTTTATATCAGCTATTCTTATCAGGTAAAAGTTTAATTATTTTTTATTTATAATATATGTAAGCAAT

>31338_31338_2_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000392677_length(amino acids)=406AA_BP=7
MQRPVCTRNLSTKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEEKPSIMVSNLHKEYDDKKDFLLSRKVKKVATKYISFCVKKG
EILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYSSETSEDDDSLKCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRI
THALDLKEHLQKTVKKLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKNRKRAAILTTHYMEEAEAVCDRVAIM
VSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEVDRLQREIQYIFPNASRQESFSSILAYKIPKEDVQSLSQSFFKLEEAKHAFAIE

--------------------------------------------------------------
>31338_31338_3_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000588877_length(transcript)=2575nt_BP=791nt
CGAGGGCCAGCTTGGTGGAGCTTAGCACAGCTTGCTCGGCGCTGCGAGCGGGCGGGGGTGGACACTGGGCTTCTGTGTGCCAGTCGCAGC
CGTTGGCTGGCGGGCACCCAATCCCAGGGCATGCCGCCGGAGCCTGGCCAGGACGCACGGTGAAAGACGAGTTTGGTGGCAGGCTTGACC
CCCCGGCTGCCAGCAGAAGCCGGCGTCGGGAGCCCAGGCGGGCAGGCCGCTGGGGTCGGGGCTGCACGTACGAGAGCCGGGACGCCCGGG
TTCAGAGCGAAGGAGGAGGCATGGCTTCGGTGTTCATGTGTGGCGTGGAGGACCTGCTGTTCAGCGGCAGCCGCTTCGTATGGAACTTGA
CCGTGTCCACGCTGCGGAGATGGTACACGGAGAGGCTGCGGGCTTGCCACCAGGTGCTGCGGACGTGGTGCGGGCTGCAGGACGTGTACC
AGATGACAGAAGGCAGGCACTGCCAGGTGCACCTCCTGGATGATAGGAGACTGGAGCTGCTGGTTCAGCCCAAACTTCTAGCAAGAGAGT
TGCTGGACCTAGTGGCTTCACATTTCAACCTGAAAGAAAAGGAGTATTTTGGAATAACATTCATAGATGACACAGGTCAGCAGAACTGGC
TGCAGTTAGATCACCGAGTTCTTGACCACGATTTGCCCAAGAAACCAGGCCCAACCATTTTGCACTTTGCTGTGAGGTTTTACATTGAGA
GCATATCGTTTTTAAAGGATAAAACCACCGTGGAGCTGTTTTTCCTGAATGCAAAGGCCTGTGTGCACAAGAAACCTTTCAACGAAGTCT
AAAAATAGGAAGCTTCCAGAACCACCAGACAATGAGGATGAAGATGAAGATGTCAAAGCTGAAAGACTAAAGGTCAAAGAGCTGATGGGT
TGCCAGTGTTGTGAGGAGAAACCATCCATTATGGTCAGCAATTTGCATAAAGAATATGATGACAAGAAAGATTTTCTTCTTTCAAGAAAA
GTAAAGAAAGTGGCAACTAAATACATCTCTTTCTGTGTGAAAAAAGGAGAGATCTTAGGACTATTGGGTCCAAATGGTGCTGGCAAAAGC
ACAATTATTAATATTCTGGTTGGTGATATTGAACCAACTTCAGGCCAGGTATTTTTAGGAGATTATTCTTCAGAGACAAGTGAAGATGAT
GATTCACTGAAGTGTATGGGTTACTGTCCTCAGATAAACCCTTTGTGGCCAGATACTACATTGCAGGAACATTTTGAAATTTATGGAGCT
GTCAAAGGAATGAGTGCAAGTGACATGAAAGAAGTCATAAGTCGAATAACACATGCACTTGATTTAAAAGAACATCTTCAGAAGACTGTA
AAGAAACTACCTGCAGGAATCAAACGAAAGTTGTGTTTTGCTCTAAGTATGCTAGGGAATCCTCAGATTACTTTGCTAGATGAACCATCT
ACAGGTATGGATCCCAAAGCCAAACAGCACATGTGGCGAGCAATTCGAACTGCATTTAAAAACAGAAAGCGGGCTGCTATTCTGACCACT
CACTATATGGAGGAGGCAGAGGCTGTCTGTGATCGAGTAGCTATCATGGTGTCTGGGCAGTTAAGATGTATCGGAACAGTACAACATCTA
AAGAGTAAATTTGGAAAAGGCTACTTTTTGGAAATTAAATTGAAGGACTGGATAGAAAACCTAGAAGTAGACCGCCTTCAAAGAGAAATT
CAGTATATTTTCCCAAATGCAAGCCGTCAGGAAAGTTTTTCTTCTATTTTGGCTTATAAAATTCCTAAGGAAGATGTTCAGTCCCTTTCA
CAATCTTTTTTTAAGCTGGAAGAAGCTAAACATGCTTTTGCCATTGAAGAATATAGCTTTTCTCAAGCAACATTGGAACAGGTTTTTGTA
GAACTCACTAAAGAACAAGAGGAGGAAGATAATAGTTGTGGAACTTTAAACAGCACACTTTGGTGGGAACGAACACAAGAAGATAGAGTA
GTATTTTGAATTTGTATTGTTCGGTCTGCTTACTGGGACTTCTTTCTTTTTCACTTAATTTTAACTTTGGTTTAAAAAGTTTTTTATTGG
AATGGTAACTGGAGAACCAAGAACGCACTTGAAATTTTTCTAAGCTCCTTAATTGAAATGCTGTGGTTGTGTGTTTTGCTTTTCTTTAAA
TAAAACGTATGTATAATTAAGTGAAGCTGCATGTTTGTATTGAAGTATATTGAACTATATAGTTTGTATGTCATCTTTTTCACCATTCAG
AAACAGTGCTTCTGAATTTGTGATTTAAAGGAATTGTAATAGAATAGTTTTATTTTTAAGTTATCTTTAAGTTTATGCCATCTTCTTAAA
TAAGTACGTAATGTTCCAATCTAAATAAAAAACTAATTCATAACTAATGCATAGAAAAGATACATAAAGCAATGTGAAAGTTTCTTGCTT
CTCCTTTTTAATTTCTAAAAAAGCCACTTTGAATGGAAGTTGTCATCCGTAAAAGCTGAAGTGTAAGCACTAGGAAATCTCAATATAGAG

>31338_31338_3_FRMD4B-ABCA5_FRMD4B_chr3_69336903_ENST00000542259_ABCA5_chr17_67252424_ENST00000588877_length(amino acids)=406AA_BP=7
MQRPVCTRNLSTKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEEKPSIMVSNLHKEYDDKKDFLLSRKVKKVATKYISFCVKKG
EILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYSSETSEDDDSLKCMGYCPQINPLWPDTTLQEHFEIYGAVKGMSASDMKEVISRI
THALDLKEHLQKTVKKLPAGIKRKLCFALSMLGNPQITLLDEPSTGMDPKAKQHMWRAIRTAFKNRKRAAILTTHYMEEAEAVCDRVAIM
VSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEVDRLQREIQYIFPNASRQESFSSILAYKIPKEDVQSLSQSFFKLEEAKHAFAIE

--------------------------------------------------------------

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Fusion Gene PPI Analysis for FRMD4B-ABCA5


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for FRMD4B-ABCA5


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for FRMD4B-ABCA5


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource