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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:GALNT14-GALNT14 (FusionGDB2 ID:32244)

Fusion Gene Summary for GALNT14-GALNT14

check button Fusion gene summary
Fusion gene informationFusion gene name: GALNT14-GALNT14
Fusion gene ID: 32244
HgeneTgene
Gene symbol

GALNT14

GALNT14

Gene ID

79623

79623

Gene namepolypeptide N-acetylgalactosaminyltransferase 14polypeptide N-acetylgalactosaminyltransferase 14
SynonymsGALNT15|GalNac-T10|GalNac-T14GALNT15|GalNac-T10|GalNac-T14
Cytomap

2p23.1

2p23.1

Type of geneprotein-codingprotein-coding
Descriptionpolypeptide N-acetylgalactosaminyltransferase 14UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 14UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T10UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (polypeptide N-acetylgalactosaminyltransferase 14UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 14UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase T10UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (
Modification date2020031320200313
UniProtAcc

Q96FL9

Q96FL9

Ensembl transtripts involved in fusion geneENST00000324589, ENST00000349752, 
ENST00000356174, ENST00000406653, 
ENST00000420311, ENST00000486564, 
ENST00000324589, ENST00000349752, 
ENST00000356174, ENST00000406653, 
ENST00000420311, ENST00000486564, 
Fusion gene scores* DoF score9 X 7 X 5=3157 X 9 X 5=315
# samples 99
** MAII scorelog2(9/315*10)=-1.8073549220576
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(9/315*10)=-1.8073549220576
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GALNT14 [Title/Abstract] AND GALNT14 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointGALNT14(31133529)-GALNT14(31133710), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across GALNT14 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across GALNT14 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS5.0N/ABU676719GALNT14chr2

31133529

+GALNT14chr2

31133710

-
ChiTaRS5.0N/ABU679527GALNT14chr2

31133529

+GALNT14chr2

31133710

-
ChiTaRS5.0N/ABU685357GALNT14chr2

31133529

+GALNT14chr2

31133710

-
ChiTaRS5.0N/ACF143349GALNT14chr2

31277907

-GALNT14chr2

31282926

-


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Fusion Gene ORF analysis for GALNT14-GALNT14

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000324589ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000324589ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000324589ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000324589ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000324589ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000349752ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000349752ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000349752ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000349752ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000349752ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000356174ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000356174ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000356174ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000356174ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000356174ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000406653ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000406653ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000406653ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000406653ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000406653ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000420311ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000420311ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000420311ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000420311ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000420311ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000486564ENST00000324589GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000486564ENST00000349752GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000486564ENST00000356174GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000486564ENST00000406653GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-3UTRENST00000486564ENST00000420311GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000324589ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000349752ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000356174ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000406653ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000420311ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-5UTRENST00000486564ENST00000486564GALNT14chr2

31133529

+GALNT14chr2

31133710

-
intron-intronENST00000324589ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000324589ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000324589ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000324589ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000324589ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000324589ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000349752ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000356174ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000406653ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000420311ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000324589GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000349752GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000356174GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000406653GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000420311GALNT14chr2

31277907

-GALNT14chr2

31282926

-
intron-intronENST00000486564ENST00000486564GALNT14chr2

31277907

-GALNT14chr2

31282926

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for GALNT14-GALNT14


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for GALNT14-GALNT14


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:31133529/:31133710)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GALNT14

Q96FL9

GALNT14

Q96FL9

FUNCTION: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Displays activity toward mucin-derived peptide substrates such as Muc2, Muc5AC, Muc7, and Muc13 (-58). May be involved in O-glycosylation in kidney.FUNCTION: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Displays activity toward mucin-derived peptide substrates such as Muc2, Muc5AC, Muc7, and Muc13 (-58). May be involved in O-glycosylation in kidney.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for GALNT14-GALNT14


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for GALNT14-GALNT14


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for GALNT14-GALNT14


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for GALNT14-GALNT14


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource