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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:GORAB-DST (FusionGDB2 ID:34015) |
Fusion Gene Summary for GORAB-DST |
Fusion gene summary |
Fusion gene information | Fusion gene name: GORAB-DST | Fusion gene ID: 34015 | Hgene | Tgene | Gene symbol | GORAB | DST | Gene ID | 92344 | 667 |
Gene name | golgin, RAB6 interacting | dystonin | |
Synonyms | GO|NTKLBP1|SCYL1BP1 | BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 | |
Cytomap | 1q24.2 | 6p12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | RAB6-interacting golginN-terminal kinase-like-binding protein 1NTKL-binding protein 1SCY1-like 1-binding protein 1SCYL1-binding protein 1 | dystoninbullous pemphigoid antigen 1dystonia musculorum proteinhemidesmosomal plaque proteintrabeculin-beta | |
Modification date | 20200313 | 20200313 | |
UniProtAcc | Q5T7V8 | Q6XUX3 | |
Ensembl transtripts involved in fusion gene | ENST00000367763, ENST00000367762, ENST00000465717, | ENST00000244364, ENST00000312431, ENST00000361203, ENST00000370754, ENST00000370788, ENST00000446842, ENST00000340834, ENST00000370765, ENST00000518935, ENST00000370769, ENST00000421834, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 17 X 18 X 8=2448 |
# samples | 1 | 19 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(19/2448*10)=-3.6875322343617 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GORAB [Title/Abstract] AND DST [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | GORAB(170521415)-DST(56382351), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | DST | GO:0009611 | response to wounding | 19403692 |
Fusion gene breakpoints across GORAB (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across DST (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS5.0 | N/A | BG952262 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
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Fusion Gene ORF analysis for GORAB-DST |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000367763 | ENST00000244364 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-3UTR | ENST00000367763 | ENST00000312431 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-3UTR | ENST00000367763 | ENST00000361203 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-3UTR | ENST00000367763 | ENST00000370754 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-3UTR | ENST00000367763 | ENST00000370788 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-3UTR | ENST00000367763 | ENST00000446842 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-5UTR | ENST00000367763 | ENST00000340834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-intron | ENST00000367763 | ENST00000370765 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
5CDS-intron | ENST00000367763 | ENST00000518935 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
In-frame | ENST00000367763 | ENST00000370769 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
In-frame | ENST00000367763 | ENST00000421834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3CDS | ENST00000367762 | ENST00000370769 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3CDS | ENST00000367762 | ENST00000421834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3CDS | ENST00000465717 | ENST00000370769 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3CDS | ENST00000465717 | ENST00000421834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000244364 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000312431 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000361203 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000370754 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000370788 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000367762 | ENST00000446842 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000244364 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000312431 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000361203 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000370754 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000370788 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-3UTR | ENST00000465717 | ENST00000446842 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-5UTR | ENST00000367762 | ENST00000340834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-5UTR | ENST00000465717 | ENST00000340834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-intron | ENST00000367762 | ENST00000370765 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-intron | ENST00000367762 | ENST00000518935 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-intron | ENST00000465717 | ENST00000370765 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
intron-intron | ENST00000465717 | ENST00000518935 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000367763 | GORAB | chr1 | 170521415 | - | ENST00000421834 | DST | chr6 | 56382351 | + | 8014 | 1929 | 5300 | 7060 | 586 |
ENST00000367763 | GORAB | chr1 | 170521415 | - | ENST00000370769 | DST | chr6 | 56382351 | + | 8095 | 1929 | 5381 | 7141 | 586 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000367763 | ENST00000421834 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + | 0.0017212 | 0.99827886 |
ENST00000367763 | ENST00000370769 | GORAB | chr1 | 170521415 | - | DST | chr6 | 56382351 | + | 0.001765032 | 0.998235 |
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Fusion Genomic Features for GORAB-DST |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for GORAB-DST |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:170521415/chr6:56382351) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GORAB | DST |
FUNCTION: Acts as a positive regulator of ERK phosphorylation downstream of fibroblast growth factor-receptor activation (PubMed:23862974, PubMed:28157540). Involved in the regulation of both caspase-dependent apoptosis and caspase-independent cell death (PubMed:15178406). In the skin, it plays a predominant role in suppressing caspase-dependent apoptosis in response to UV stress in a range of dermal cell types (PubMed:28157540). {ECO:0000269|PubMed:15178406, ECO:0000269|PubMed:23862974, ECO:0000269|PubMed:28157540}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7210_7221 | 0 | 5172.0 | Calcium binding | 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7246_7257 | 0 | 5172.0 | Calcium binding | 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7210_7221 | 0 | 2650.0 | Calcium binding | 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7246_7257 | 0 | 2650.0 | Calcium binding | 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 2394_2431 | 0 | 5172.0 | Compositional bias | Note=Asp-rich | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 2592_2599 | 0 | 5172.0 | Compositional bias | Note=Poly-Asp | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 2394_2431 | 0 | 2650.0 | Compositional bias | Note=Asp-rich | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 2592_2599 | 0 | 2650.0 | Compositional bias | Note=Poly-Asp | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 151_255 | 0 | 5172.0 | Domain | Calponin-homology (CH) 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 35_138 | 0 | 5172.0 | Domain | Calponin-homology (CH) 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7197_7232 | 0 | 5172.0 | Domain | EF-hand 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7233_7268 | 0 | 5172.0 | Domain | EF-hand 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7273_7351 | 0 | 5172.0 | Domain | GAR | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 887_944 | 0 | 5172.0 | Domain | SH3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 151_255 | 0 | 2650.0 | Domain | Calponin-homology (CH) 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 35_138 | 0 | 2650.0 | Domain | Calponin-homology (CH) 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7197_7232 | 0 | 2650.0 | Domain | EF-hand 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7233_7268 | 0 | 2650.0 | Domain | EF-hand 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7273_7351 | 0 | 2650.0 | Domain | GAR | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 887_944 | 0 | 2650.0 | Domain | SH3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1383_1389 | 0 | 5172.0 | Motif | Nuclear localization signal%3B in isoform 6 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7550_7553 | 0 | 5172.0 | Motif | Note=Microtubule tip localization signal | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1383_1389 | 0 | 2650.0 | Motif | Nuclear localization signal%3B in isoform 6 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7550_7553 | 0 | 2650.0 | Motif | Note=Microtubule tip localization signal | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 35_252 | 0 | 5172.0 | Region | Note=Actin-binding | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 35_252 | 0 | 2650.0 | Region | Note=Actin-binding | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1293_1422 | 0 | 5172.0 | Repeat | Note=Spectrin 3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1440_1540 | 0 | 5172.0 | Repeat | Note=Spectrin 4 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1584_1626 | 0 | 5172.0 | Repeat | Note=Plectin 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1660_1703 | 0 | 5172.0 | Repeat | Note=Plectin 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1774_1817 | 0 | 5172.0 | Repeat | Note=Plectin 3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1818_1855 | 0 | 5172.0 | Repeat | Note=Plectin 4 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 1856_1891 | 0 | 5172.0 | Repeat | Note=Plectin 5 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 3395_3501 | 0 | 5172.0 | Repeat | Note=Spectrin 5 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 3643_3752 | 0 | 5172.0 | Repeat | Note=Spectrin 6 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 3926_4040 | 0 | 5172.0 | Repeat | Note=Spectrin 7 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4047_4153 | 0 | 5172.0 | Repeat | Note=Spectrin 8 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4160_4259 | 0 | 5172.0 | Repeat | Note=Spectrin 9 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4269_4368 | 0 | 5172.0 | Repeat | Note=Spectrin 10 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4516_4621 | 0 | 5172.0 | Repeat | Note=Spectrin 11 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4628_4732 | 0 | 5172.0 | Repeat | Note=Spectrin 12 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4742_4842 | 0 | 5172.0 | Repeat | Note=Spectrin 13 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4849_4951 | 0 | 5172.0 | Repeat | Note=Spectrin 14 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 4958_5058 | 0 | 5172.0 | Repeat | Note=Spectrin 15 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5068_5167 | 0 | 5172.0 | Repeat | Note=Spectrin 16 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5174_5277 | 0 | 5172.0 | Repeat | Note=Spectrin 17 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5284_5388 | 0 | 5172.0 | Repeat | Note=Spectrin 18 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5395_5497 | 0 | 5172.0 | Repeat | Note=Spectrin 19 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5504_5715 | 0 | 5172.0 | Repeat | Note=Spectrin 20 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5831_5933 | 0 | 5172.0 | Repeat | Note=Spectrin 21 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 5941_6041 | 0 | 5172.0 | Repeat | Note=Spectrin 22 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 602_699 | 0 | 5172.0 | Repeat | Note=Spectrin 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6048_6154 | 0 | 5172.0 | Repeat | Note=Spectrin 23 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6161_6263 | 0 | 5172.0 | Repeat | Note=Spectrin 24 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6270_6373 | 0 | 5172.0 | Repeat | Note=Spectrin 25 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6380_6482 | 0 | 5172.0 | Repeat | Note=Spectrin 26 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6489_6591 | 0 | 5172.0 | Repeat | Note=Spectrin 27 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6598_6700 | 0 | 5172.0 | Repeat | Note=Spectrin 28 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6707_6810 | 0 | 5172.0 | Repeat | Note=Spectrin 29 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6817_6918 | 0 | 5172.0 | Repeat | Note=Spectrin 30 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 6925_7027 | 0 | 5172.0 | Repeat | Note=Spectrin 31 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 701_802 | 0 | 5172.0 | Repeat | Note=Spectrin 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000244364 | 0 | 84 | 7037_7167 | 0 | 5172.0 | Repeat | Note=Spectrin 32 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1293_1422 | 0 | 2650.0 | Repeat | Note=Spectrin 3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1440_1540 | 0 | 2650.0 | Repeat | Note=Spectrin 4 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1584_1626 | 0 | 2650.0 | Repeat | Note=Plectin 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1660_1703 | 0 | 2650.0 | Repeat | Note=Plectin 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1774_1817 | 0 | 2650.0 | Repeat | Note=Plectin 3 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1818_1855 | 0 | 2650.0 | Repeat | Note=Plectin 4 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 1856_1891 | 0 | 2650.0 | Repeat | Note=Plectin 5 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 3395_3501 | 0 | 2650.0 | Repeat | Note=Spectrin 5 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 3643_3752 | 0 | 2650.0 | Repeat | Note=Spectrin 6 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 3926_4040 | 0 | 2650.0 | Repeat | Note=Spectrin 7 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4047_4153 | 0 | 2650.0 | Repeat | Note=Spectrin 8 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4160_4259 | 0 | 2650.0 | Repeat | Note=Spectrin 9 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4269_4368 | 0 | 2650.0 | Repeat | Note=Spectrin 10 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4516_4621 | 0 | 2650.0 | Repeat | Note=Spectrin 11 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4628_4732 | 0 | 2650.0 | Repeat | Note=Spectrin 12 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4742_4842 | 0 | 2650.0 | Repeat | Note=Spectrin 13 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4849_4951 | 0 | 2650.0 | Repeat | Note=Spectrin 14 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 4958_5058 | 0 | 2650.0 | Repeat | Note=Spectrin 15 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5068_5167 | 0 | 2650.0 | Repeat | Note=Spectrin 16 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5174_5277 | 0 | 2650.0 | Repeat | Note=Spectrin 17 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5284_5388 | 0 | 2650.0 | Repeat | Note=Spectrin 18 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5395_5497 | 0 | 2650.0 | Repeat | Note=Spectrin 19 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5504_5715 | 0 | 2650.0 | Repeat | Note=Spectrin 20 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5831_5933 | 0 | 2650.0 | Repeat | Note=Spectrin 21 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 5941_6041 | 0 | 2650.0 | Repeat | Note=Spectrin 22 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 602_699 | 0 | 2650.0 | Repeat | Note=Spectrin 1 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6048_6154 | 0 | 2650.0 | Repeat | Note=Spectrin 23 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6161_6263 | 0 | 2650.0 | Repeat | Note=Spectrin 24 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6270_6373 | 0 | 2650.0 | Repeat | Note=Spectrin 25 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6380_6482 | 0 | 2650.0 | Repeat | Note=Spectrin 26 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6489_6591 | 0 | 2650.0 | Repeat | Note=Spectrin 27 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6598_6700 | 0 | 2650.0 | Repeat | Note=Spectrin 28 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6707_6810 | 0 | 2650.0 | Repeat | Note=Spectrin 29 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6817_6918 | 0 | 2650.0 | Repeat | Note=Spectrin 30 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 6925_7027 | 0 | 2650.0 | Repeat | Note=Spectrin 31 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 701_802 | 0 | 2650.0 | Repeat | Note=Spectrin 2 | |
Tgene | DST | chr1:170521415 | chr6:56382351 | ENST00000370765 | 0 | 24 | 7037_7167 | 0 | 2650.0 | Repeat | Note=Spectrin 32 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GORAB | chr1:170521415 | chr6:56382351 | ENST00000367762 | - | 1 | 4 | 145_297 | 0 | 247.0 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | GORAB | chr1:170521415 | chr6:56382351 | ENST00000367763 | - | 1 | 5 | 145_297 | 0 | 395.0 | Coiled coil | Ontology_term=ECO:0000255 |
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Fusion Gene Sequence for GORAB-DST |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>34015_34015_1_GORAB-DST_GORAB_chr1_170521415_ENST00000367763_DST_chr6_56382351_ENST00000370769_length(transcript)=8095nt_BP=1929nt GCGGCCGGGGAAAAACCCGGATGAGCTGGGCAGCAGTGTTGGCAGTCGCGGCTGCGAGATTTGGGCACTTTTGGGGGTGCCGGTGGCCCG GGCCGATGGCGCAAGGTTGGGCAGGATTCTCTGAGGAGGAACTGAGGAGACTAAAGCAGACTAAAGATCCATTTGAACCACAGCGACGTC TCCCCGCGAAGAAAAGTCGACAACAACTTCAGCGAGAAAAAGCCCTTGTAGAGCAAAGCCAAAAACTTGGGCTTCAAGATGGATCAACCT CATTACTTCCAGAGCAGCTGCTTTCAGCACCAAAACAGAGAGTTAACGTTCAAAAACCACCTTTTTCTTCCCCTACTCTTCCGAGTCATT TCACTCTCACCTCCCCCGTTGGTGATGGACAACCACAGGGCATTGAAAGTCAGCCAAAGGAACTGGGACTTGAGAATTCCCATGATGGTC ACAACAATGTTGAGATTCTACCTCCAAAGCCAGATTGCAAATTGGAGAAAAAGAAAGTGGAATTGCAAGAAAAATCTCGTTGGGAAGTCC TCCAACAAGAACAACGGCTAATGGAAGAGAAAAATAAACGTAAAAAAGCTCTTTTGGCTAAAGCTATTGCAGAAAGATCCAAAAGAACTC AGGCAGAGACCATGAAACTAAAGCGGATCCAGAAGGAGTTGCAGGCTTTAGATGACATGGTGTCAGCTGACATTGGAATTCTCAGGAACC GGATTGATCAGGCCAGCTTAGACTATTCATACGCTCGAGAGGCCATTTCAGCCTGCGGAGGAGAGTGTGACATTAGAATTTGCTAAAGAG AACAGAAAGTGTCAAGAACAAGCTGTTTCCCCAAAGGTAGATGACCAGTGTGGAAATTCCAGTAGCATCCCCTTTCTTAGTCCAAACTGC CCAAATCAAGAAGGTAATGACATTTCAGCTGCTTTGGCCACATGAAGTTCTGGTATTCTTTTGAGCTAATATGGTATTGAGTAAAGTATA CTTTTTGCAGTAGATCATGCCCTGACCTCCAATAAAAACCTCTTTAAAACAATGCTGATTTTTGAATTCATGATTAGTTTTAGTAAATTA ATAGGTTTGGCCATTCTAAAATCCAAAATTATGATAACTGTATTTCTAGGGGTATGTTTCACCTTGATTTTGGCCCGGTTCTTTCAGTGT TCCGTTTACCCTTTTTACTGAAAGTAAGTGACTTAAAAGGATGGAAGAAAAACTACATGGTTGGAGTGTTTTTAGATCAGATAAATATAG AAAAGTAAAATGGAAAATGATACTCAATACCTAGTTAAACTCATTTCACTTCTCCTGGGAGACGTATTAAGACTGGAAGTCCTATTTTAT TTAATCAGTATCAGTAAAAAGACAAAAATTACAGTGTGAACAAGAGAAAAACAGGAATAGAAGAAAAAAGTTGCAGGTTGAATTATCTAT CTGGATATTACTAGAGTTGTAAAACACAACTTGGAAACTGGAATTTATGTGAAGAACCAAACAACTTAAACCAGCATCACTTTTGTCTTC AATTTGCCTTCCAGTGATTTTAGTTTACAACCTGCGTTTTGTTATTTGAAACACACACACTTATATATAAACACATGTAATTTTACTATT TTATTGTCTTTCCTTTAATCGATGAATTGATTAAATTTAGACAATTAAAACATTTCTAAAGTGAGACTGAAAATAATATAGAAAATCTCA TTGCTACTTGTGATTATCAAAAAAAGTATGTATTTTCTTTCTAAAGTTATCTATAAATATGTTTTTGATATGTTGGACATGAATTACCCT GTCATGAAGCGTTTAAATTGTTAAAATGCTGATTTTCTTATTAGTTTGTTAATTGCCTGTTACTAGTACTTGACCAATACATTGTGCTAT ATGTAAATGTGTAAATAAATATTGTAATTTTCTCACAAAATTCCAAGAAGACTCCCAGCCGACCAGGAAGTCGAGCTGGAAGCAAAGCTG GCAGCAGGGCCAGCAGCCGCCGAGGCAGTGATGCATCAGACTTTGACATTTCAGAAATCCAGTCCGTGTGCTCAGATGTGGAAACTGTCC CCCAGACACACAGACCTACACCCCGAGCAGGTTCTCGGCCATCCACAGCGAAGCCTTCAAAAATCCCCACGCCCCAGAGGAAATCACCTG CCAGCAAATTGGACAAGTCCTCAAAGAGATAGTGCAATTGGTTCTACCAAGGCCCTTCCTTGAGCATTTATTATTTAAGTTTGAACGATG TAAAATATGGTGTAGAAATTCTTGTGAAATATTGCAAGAGGCGAGTTTAAAATTCTGCAGATGGCCTTATTTGTGTATTTGTCTTTTTAT TTTATCTGTATAATTTTTTTTGTCAGATATTCTGGGGTTAAAGTCACATCATATGTGAGGAGGAAAAGTTTAACATGAACTAACATTTCT GCACTGTAACGTGCCGGGCACACACTAAACTCAGTTACTGTACCTACAGGTAAGTCTACATCCTCTCTGACAGCCACAGCACTACATCAA TCCCTGACGTTAGGGATACCTCATGACATTTTCCTGTTTTTATGGAAACTCTGAGAAGCTGAATGATACATGCAGGGGATATTTTTTGAG ATGATTTAAATGTAAACCAAAAGATGGAAGACAAAAAGACAAACACACCCACACGCAGTCTTTGCAGTATCTGACAGAGAACTCACAGGA AGTTACTTCAAGCACTTGCCAGTACTATGATATTCAAGTACCTTGCAGCATTTCTCTGCCATTGCTTTCAATGAGGCCAGAGGCATCCTG GATATTAGACCTATTATACTGTAAGAATATAAGTATAAAGTGCGTTCATATACATGTGAGGTTTTCTTTTGCTTGAGTGGACAGTAGCAC CTGTATCATTGAACTCATTTTGTATCAGAGCAATTTTGCTTGCAGAAAGCTATGAAATAAAACACGTCCCTTAACTGCATTGCTATGGAA TTAATTTTTTTTCCCCAGGGAAAACTAGTGTATTTTTTTATGAGCAATATCAATTTGGAGTGACCAAAAGATACTTAAAAATGGGTTTAT TTTGATTTCTCATCTGAAATAATCATGTTCTGGTATTATATCTATCTATATTTAATAAATATATACATTTTAATTTATTATGTGTACTCA CATACTATAGAAAGATATTAGTATGCATTTAATAAAACATATTCACTTGAATATATGGGGAACGCCAATACAAGGAAGCAAGCTTCGACT TCCAGGATATTTATCAGGGAAAGGCTTCCACTCTGGGGAGGACAGTGGCTTGATAACAACTGCAGCTGCCAGAGTCCGAACACAGTTTGC TGCCAAAGGAAGGACAAACATGGAACTGCGTGAGAAGTTCATTTTAGCAGATGGTGCCAGCCAGGGTATGGCTGCTTTCCGACCCCGAGG CCGAAGATCCCGGCCATCATCACGAGGCGCTTCACCCAACAGATCCACTTCTGTGTCCAGTCAGGCTGCGCAGGCGGCCTCCCCACAGGT CCCTGCCACCACCACACCCAAGTTCATCATCATGGGAGTAAAATGTTACGTTCGGAATCAAACTCTTCAATTACTACTACTCAGCCTACT ATAGTTTGGAGACTCCCAGCAACTGCGACTGGTCCGGATCCTGCGGAGTACTGTGATGGTTCGTGTTGGAGGTGGATGGATGGCACTTGA TGAGTTCTTAGTGAAAAATGATCCTTGCAGGGGTGACAAGGCAGGTAGCTAAGTGTAAATGTGCAAAGCGATTTCAAGTTGAGCAGATTG GTGATAATAAATACAGGGTAAGTTTTCAAAGTAATAGTTTCCAACCAGTCGCTTGGAGATGAGCGCAGTTGCAGACATCTTTGACAGAGA TGGCGATGGATATATTGACTACTATGAATTTGTAGCAGCCCTTCACCCAAATAAAGATGCATATAAACCTATCACAGATGCCGACAAAAT CGAAGATGAGCTGAGGGAATTTGCTAACTTTGATTTTGATATCTGGCGCAAAAAATACATGCGATGGATGAATCACAAGAAATCTCGAGT GATGGACTTCTTCAGGAGAATTGATAAAGACCAGGATGGGAAAATAACGCGGCAGGAATTTATTGATGGAATTCTTTCCTCAAGAAAACG CTTTCCAGCATCAAGCTTGTATCCCTCTGGGTCACAGACACAAATTGAAACCAAAAATCCTAGGGTAAACTTACTGGTGAGCAAATGGCA GCAAGTCTGGCTCCTGGCGTTGGAAAGAAGGAGGAAACTCAATGATGCCTTGGACAGACTAGAGGAGACCTTCATGGAGGAAATGACCAG AAAACAGCCTGATGTTGATAAAGTAACGAAGACCTATAAGAGGAGAGCTGCTGATCCTTCCTCATTACAATCCCATATTCCAGTCTTGGA TAAGGGACGAGCAGGAAGTGCTGGCCTGGGCAAAGCAACATCAGCAGAGATTAGCAAGTGCTCTGGCTGGGCTTATTGCCAAACAGGAAT TGTTGGAAGCTTTGCTGGCTTGGTTGCAATGGGCTGAAACTACACTTACTGATAAGGATAAAGAAGTCATCCCCCAGGAGATCGAAGAGG TGAAAGCACTCATTGCAGAACACCAGGAATTCATGAAGAAACTGGAAGAAAAGAGAGCTGAACTAAATAAAGCCACCACTATGGGCGACA CCGTTTTGGCTATCTGCCACCCCGACTCCATCACTACCATTAAGCACTGGATAACAATCATCCGGGCGAGGTTTGAGGAGGCAGAGGAAT TCCACTCGGTGGTACATGCCCTCTTGGAGTGGCTGGCTGAGGCGGAGCAAACCCTGCGTTTCCATGGTGTCCTCCCAGATGATGAGGATG CTCTCCGGACTCTCATTGATCAGCATAAAGCCTTCCAAAAAGAGTTGGGGAAGAGGACCAGCAGTGTGCAGGCCCTGAAGCGCTCAGCCC GAGAACTCATAGAAGGCAGTCGGGATGACTCCTCCTGGGTCAAGGTCCAGATGCAGGAATTAAGCACACGCTGGGAGACCGTGTGTGCAC TTTCTATATCAAAGCAAACACGGTTAGAAGCAGCCCTGCGTCAGACAAAACAAATTGGAGGAAGCCCTGTTATTTTCTGGACAATTCACA GATGCCCTACAGGCTCTCATTGATTGGTTATATAGAGTTGAACCCCAGCTGGCAGAAGACCAGCCTGTTCATGGAGACATTGATTTGGTG ATGAATCTGATCGATAATCACAAGGAGTTTCAGAAATCACTCGGAGCCAAGCATTCTGTCTACGACACCACCAACAGGACTGGACGTTCT CTGAAGGAGAAAACCTCCCTGGCTGATGACAACCTGAAACTGGATGACATGCTGAGTGAACTCAGAGACAAATGGGATACCATATGTGGA AAATCTGTGGAAAGTTCCATGAAGCTTGGAGTAAACTTATGGAGTGGCTAGAAGAGTCAGAAAAGTCTTTGGATTCTGAACTGGAAATCG CAAATGATCCAGACAAAATAAAAACACAACTTGCACAACATAAGGTTTTTGCCAATGAAGTAAATTCTCATCGTGAGCAGATAATAGAGC TGGACAAAACTGGAACCCACCTAAAATATTTTAGTCAGAAACAAGATGTTGTTCTAATCAAGAATCTACTTATCAGTGTACAAAGTCGAT GGGAAAAAGTGGTTCAACGGTTGGTAGAGAGAGGAAGATCTTTGGATGATGCAAGGAAGAGAGCCAAGCAGACTAAACTGGAAGAGGCTC TCAACTTGGCAATGGAGTTCCACAATTCTCTCCAAGACTTCATCAACTGGCTTACTCAGGCTGAACAGACCCTAAATGTAGCTTCTCGGC CAAGTCTCATCTTGGACACAGTCTTATTTCAAATTGACGAACACAAGGAAGTCTGTGCTGCCTTTGAAGCTAAAGAAGAAACATATAAGA GTCTGATGCAGAAAGGCCAGCAGATGCTTGCAAGATGCCCAAAATCTGCAGAGACAAATATTGACCAAGACATAAATAACTTGAAAGAAA AATGGGAATCGGTGGAAACCAAACTCAATGAAAGGAAAGCCAAAGGGTTCCATGGCGAAATTGAGGATTTGCAGCAGTGGCTGACTGACA CGGAGCGTCATCTGTTGGCATCTAAACCGCTGGGAGGTTTACCGGAAACAGCCAAGGAGCAGCTTAATGTCCATATGGTGCTCCAAAATG ATGTATTAGCCCATCAGTCCACAGTGGAAGCCGTTAATAAAGCAGGAAATGATCTAATTGAATCAAGTGCAGGAGAAGAAGCAAGCAACC TTCAGAACAAGCTAGAGGTTTTAAATCAACGCTGGCAAAATGTTTTGGAAAAAACAGAACAAAGGAAGCAGCAGCTGGATGGTGCCTTGC GCCAGCATAAACTGGAGGGTGCTCTATTAGCCTTGGGTCAGTTCCAACATGCCCTGGATGAGCTCCTGGCATGGCTGACACACACCGAGG GCTTGCTAAGTGAGCAGAAACCTGTTGGAGGAGACCCTAAAGCCATTGAAATTGAACTTGCCAAGCATCATCAATTTAAGTCTGAGGCCT ATCAACAGCAGATAGAAATGGAAAGACTGAATCATCAAGCAGAGCTTTTGCTAAAGAAAGTAACAGAAGAGAGTGACAAACACACTGTTC AAGACCCATTAATGGAACTGAAATTGATATGGGATAGCCTGGAGGAGAGAATCATCAACAGACAGGCGGTATTTGACTGGGTAGATATTG CAGGTGGTAAATTAGCTTCAATGTCTCCAATTGGAACAGATCTCGAAACTGTCAAGCAGCAGATTGAAGAGCTAAAGTTAAATTCAGCAT GGGATTCTCTAAATAAAGCTTGGAAAGACCGGATTGACAAACTTGAGGAGGCAATGCAGGCTGCCGTTCAGTACCAGGATGGACTGCAGA CCATAAGGGAAGAAATAGATGGACTACAGGAGGAGCTGGATATAGTTATTAACCTAGGTTCTGAACTCATTGCGGCATGTGGGGAGCCTG ATAAACCCATTGTCAAGAAGAGTATAGATGAGCTGTTCAGGATAAGCTTGACCAAATGGTTTTCATTTGGGAGAACATACACACACTGGT GGAAGAGAGGGAAGCCAAACTACTGGATGTGATGGAGCTAGCAGAAAAGTTCTGGTGTGATCACATGTCATTGATAGTTACCATTAAAGA TACTCAAGATTTCATCCGGGACCTGGAAGATCCTGGAATTGATCCTTCAGTAGTAAAACAACAGCAAGAAGCAGCAGAGTTCCATGACAA GATAGATCAGATCCTTGAGAGCCTGGAACGCATCGTGGAACGTCTGAGGCAGCCACCCTCTATCTCTGCAGAGGTTGAGAAGATCAAGGA ACAGATCAGTGAAAATAAGAATGTGTCAGTAGACATGGAAAAGCTACAGCCGTTGTATGAAACTCTTAAACAGAGGGGAGAGGAAATGAT TGCTAGATCTGGGGGGACTGATAAAGACATATCTGCCAAAGCAACTGCGTGAGTTGATAGCTGAACACAAGCCTCATATAGATAAGATGA ACAAAACTGGGCCACAGTTACTGGAATTGAGCCCTGGGGAAGGCTTTTCTATCCAAGAGAAGTATGTGGCAGCCGACACCCTTTACAGTC AAATTAAAGAAGATGTCAAAAAGCGTGCTGTGGCACTGGATGAAGCCATTTCTCAATCAACTCAGAAAAAACTGGACAAGGTACTGAAGA ACTATGATACCATCTGCCAGATTAATTCAGAAAGGTATCTGCAGCTGGAACGGGCACAGTCCCTGGTTAACCAATTCTGGGAAACATATG AAGAACTTTGGCCATGGCTGACAGAAACACAATCAATCATCTCTCAGCTTCCCGCCCCAGCCCTTGAATATGAAACTCTAAGGCAGCAGC AGGAAGAACATCGGACATTCACCATGGAGATTTTGAGACACAAGGATATTATTGATGACCTTGTTAAATCTGGGCATAAAATCATGACCG >34015_34015_1_GORAB-DST_GORAB_chr1_170521415_ENST00000367763_DST_chr6_56382351_ENST00000370769_length(amino acids)=586AA_BP= MGYHMWKICGKFHEAWSKLMEWLEESEKSLDSELEIANDPDKIKTQLAQHKVFANEVNSHREQIIELDKTGTHLKYFSQKQDVVLIKNLL ISVQSRWEKVVQRLVERGRSLDDARKRAKQTKLEEALNLAMEFHNSLQDFINWLTQAEQTLNVASRPSLILDTVLFQIDEHKEVCAAFEA KEETYKSLMQKGQQMLARCPKSAETNIDQDINNLKEKWESVETKLNERKAKGFHGEIEDLQQWLTDTERHLLASKPLGGLPETAKEQLNV HMVLQNDVLAHQSTVEAVNKAGNDLIESSAGEEASNLQNKLEVLNQRWQNVLEKTEQRKQQLDGALRQHKLEGALLALGQFQHALDELLA WLTHTEGLLSEQKPVGGDPKAIEIELAKHHQFKSEAYQQQIEMERLNHQAELLLKKVTEESDKHTVQDPLMELKLIWDSLEERIINRQAV FDWVDIAGGKLASMSPIGTDLETVKQQIEELKLNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQTIREEIDGLQEELDIVINLGSELI -------------------------------------------------------------- >34015_34015_2_GORAB-DST_GORAB_chr1_170521415_ENST00000367763_DST_chr6_56382351_ENST00000421834_length(transcript)=8014nt_BP=1929nt GCGGCCGGGGAAAAACCCGGATGAGCTGGGCAGCAGTGTTGGCAGTCGCGGCTGCGAGATTTGGGCACTTTTGGGGGTGCCGGTGGCCCG GGCCGATGGCGCAAGGTTGGGCAGGATTCTCTGAGGAGGAACTGAGGAGACTAAAGCAGACTAAAGATCCATTTGAACCACAGCGACGTC TCCCCGCGAAGAAAAGTCGACAACAACTTCAGCGAGAAAAAGCCCTTGTAGAGCAAAGCCAAAAACTTGGGCTTCAAGATGGATCAACCT CATTACTTCCAGAGCAGCTGCTTTCAGCACCAAAACAGAGAGTTAACGTTCAAAAACCACCTTTTTCTTCCCCTACTCTTCCGAGTCATT TCACTCTCACCTCCCCCGTTGGTGATGGACAACCACAGGGCATTGAAAGTCAGCCAAAGGAACTGGGACTTGAGAATTCCCATGATGGTC ACAACAATGTTGAGATTCTACCTCCAAAGCCAGATTGCAAATTGGAGAAAAAGAAAGTGGAATTGCAAGAAAAATCTCGTTGGGAAGTCC TCCAACAAGAACAACGGCTAATGGAAGAGAAAAATAAACGTAAAAAAGCTCTTTTGGCTAAAGCTATTGCAGAAAGATCCAAAAGAACTC AGGCAGAGACCATGAAACTAAAGCGGATCCAGAAGGAGTTGCAGGCTTTAGATGACATGGTGTCAGCTGACATTGGAATTCTCAGGAACC GGATTGATCAGGCCAGCTTAGACTATTCATACGCTCGAGAGGCCATTTCAGCCTGCGGAGGAGAGTGTGACATTAGAATTTGCTAAAGAG AACAGAAAGTGTCAAGAACAAGCTGTTTCCCCAAAGGTAGATGACCAGTGTGGAAATTCCAGTAGCATCCCCTTTCTTAGTCCAAACTGC CCAAATCAAGAAGGTAATGACATTTCAGCTGCTTTGGCCACATGAAGTTCTGGTATTCTTTTGAGCTAATATGGTATTGAGTAAAGTATA CTTTTTGCAGTAGATCATGCCCTGACCTCCAATAAAAACCTCTTTAAAACAATGCTGATTTTTGAATTCATGATTAGTTTTAGTAAATTA ATAGGTTTGGCCATTCTAAAATCCAAAATTATGATAACTGTATTTCTAGGGGTATGTTTCACCTTGATTTTGGCCCGGTTCTTTCAGTGT TCCGTTTACCCTTTTTACTGAAAGTAAGTGACTTAAAAGGATGGAAGAAAAACTACATGGTTGGAGTGTTTTTAGATCAGATAAATATAG AAAAGTAAAATGGAAAATGATACTCAATACCTAGTTAAACTCATTTCACTTCTCCTGGGAGACGTATTAAGACTGGAAGTCCTATTTTAT TTAATCAGTATCAGTAAAAAGACAAAAATTACAGTGTGAACAAGAGAAAAACAGGAATAGAAGAAAAAAGTTGCAGGTTGAATTATCTAT CTGGATATTACTAGAGTTGTAAAACACAACTTGGAAACTGGAATTTATGTGAAGAACCAAACAACTTAAACCAGCATCACTTTTGTCTTC AATTTGCCTTCCAGTGATTTTAGTTTACAACCTGCGTTTTGTTATTTGAAACACACACACTTATATATAAACACATGTAATTTTACTATT TTATTGTCTTTCCTTTAATCGATGAATTGATTAAATTTAGACAATTAAAACATTTCTAAAGTGAGACTGAAAATAATATAGAAAATCTCA TTGCTACTTGTGATTATCAAAAAAAGTATGTATTTTCTTTCTAAAGTTATCTATAAATATGTTTTTGATATGTTGGACATGAATTACCCT GTCATGAAGCGTTTAAATTGTTAAAATGCTGATTTTCTTATTAGTTTGTTAATTGCCTGTTACTAGTACTTGACCAATACATTGTGCTAT ATGTAAATGTGTAAATAAATATTGTAATTTTCTCACAAAATTCCAAGAAGACTCCCAGCCGACCAGGAAGTCGAGCTGGAAGCAAAGCTG GCAGCAGGGCCAGCAGCCGCCGAGGCAGTGATGCATCAGACTTTGACATTTCAGAAATCCAGTCCGTGTGCTCAGATGTGGAAACTGTCC CCCAGACACACAGACCTACACCCCGAGCAGGTTCTCGGCCATCCACAGCGAAGCCTTCAAAAATCCCCACGCCCCAGAGGAAATCACCTG CCAGCAAATTGGACAAGTCCTCAAAGAGATAGTGCAATTGGTTCTACCAAGGCCCTTCCTTGAGCATTTATTATTTAAGTTTGAACGATG TAAAATATGGTGTAGAAATTCTTGTGAAATATTGCAAGAGGCGAGTTTAAAATTCTGCAGATGGCCTTATTTGTGTATTTGTCTTTTTAT TTTATCTGTATAATTTTTTTTGTCAGATATTCTGGGGTTAAAGTCACATCATATGTGAGGAGGAAAAGTTTAACATGAACTAACATTTCT GCACTGTAACGTGCCGGGCACACACTAAACTCAGTTACTGTACCTACAGGTAAGTCTACATCCTCTCTGACAGCCACAGCACTACATCAA TCCCTGACGTTAGGGATACCTCATGACATTTTCCTGTTTTTATGGAAACTCTGAGAAGCTGAATGATACATGCAGGGGATATTTTTTGAG ATGATTTAAATGTAAACCAAAAGATGGAAGACAAAAAGACAAACACACCCACACGCAGTCTTTGCAGTATCTGACAGAGAACTCACAGGA AGTTACTTCAAGCACTTGCCAGTACTATGATATTCAAGTACCTTGCAGCATTTCTCTGCCATTGCTTTCAATGAGGCCAGAGGCATCCTG GATATTAGACCTATTATACTGTAAGAATATAAGTATAAAGTGCGTTCATATACATGTGAGGTTTTCTTTTGCTTGAGTGGACAGTAGCAC CTGTATCATTGAACTCATTTTGTATCAGAGCAATTTTGCTTGCAGAAAGCTATGAAATAAAACACGTCCCTTAACTGCATTGCTATGGAA TTAATTTTTTTTCCCCAGGGAAAACTAGTGTATTTTTTTATGAGCAATATCAATTTGGAGTGACCAAAAGATACTTAAAAATGGGTTTAT TTTGATTTCTCATCTGAAATAATCATGTTCTGGTATTATATCTATCTATATTTAATAAATATATACATTTTAATTTATTATGTGTACTCA CATACTATAGAAAGATATTAGTATGCATTTAATAAAACATATTCACTTGAATATATGGGGAACGCCAATACAAGGAAGCAAGCTTCGACT TCCAGGATATTTATCAGGGAAAGGCTTCCACTCTGGGGAGGACAGTGGCTTGATAACAACTGCAGCTGCCAGAGTCCGAACACAGTTTGC TGCCAAAGGAAGGACAAACATGGAACTGCGTGAGAAGTTCATTTTAGCAGATGGTGCCAGCCAGGGTATGGCTGCTTTCCGACCCCGAGG CCGAAGATCCCGGCCATCATCACGAGGCGCTTCACCCAACAGATCCACTTCTGTGTCCAGTCAGGCTGCGCAGGCGGCCTCCCCACAGGT CCCTGCCACCACCACACCCAAGTTCATCATCATGGGAGTAAAATGTTACGTTCGGAATCAAACTCTTCAATTACTACTACTCAGCCTACT ATAGTTTGGAGACTCCCAGCAACTGCGACTGGTCCGGATCCTGCGGAGTACTGTGATGGTTCGTGTTGGAGGTGGATGGATGGCACTTGA TGAGTTCTTAGTGAAAAATGATCCTTGCAGGGGTGACAAGGCAGGTAGCTAAGTGTAAATGTGCAAAGCGATTTCAAGTTGAGCAGATTG GTGATAATAAATACAGGGTAAGTTTTCAAAGTAATAGTTTCCAACCAGTCGCTTGGAGATGAGCGCAGTTGCAGACATCTTTGACAGAGA TGGCGATGGATATATTGACTACTATGAATTTGTAGCAGCCCTTCACCCAAATAAAGATGCATATAAACCTATCACAGATGCCGACAAAAT CGAAGATGAGCTGAGGGAATTTGCTAACTTTGATTTTGATATCTGGCGCAAAAAATACATGCGATGGATGAATCACAAGAAATCTCGAGT GATGGACTTCTTCAGGAGAATTGATAAAGACCAGGATGGGAAAATAACGCGGCAGGAATTTATTGATGGAATTCTTTCCTCAAGAAAACG CTTTCCAGCATCAAGCTTGTATCCCTCTGGGTCACAGACACAAATTGAAACCAAAAATCCTAGGGTAAACTTACTGACCTTCATGGAGGA AATGACCAGAAAACAGCCTGATGTTGATAAAGTAACGAAGACCTATAAGAGGAGAGCTGCTGATCCTTCCTCATTACAATCCCATATTCC AGTCTTGGATAAGGGACGAGCAGGAAGTGCTGGCCTGGGCAAAGCAACATCAGCAGAGATTAGCAAGTGCTCTGGCTGGGCTTATTGCCA AACAGGAATTGTTGGAAGCTTTGCTGGCTTGGTTGCAATGGGCTGAAACTACACTTACTGATAAGGATAAAGAAGTCATCCCCCAGGAGA TCGAAGAGGTGAAAGCACTCATTGCAGAACACCAGGAATTCATGAAGAAACTGGAAGAAAAGAGAGCTGAACTAAATAAAGCCACCACTA TGGGCGACACCGTTTTGGCTATCTGCCACCCCGACTCCATCACTACCATTAAGCACTGGATAACAATCATCCGGGCGAGGTTTGAGGAGG CAGAGGAATTCCACTCGGTGGTACATGCCCTCTTGGAGTGGCTGGCTGAGGCGGAGCAAACCCTGCGTTTCCATGGTGTCCTCCCAGATG ATGAGGATGCTCTCCGGACTCTCATTGATCAGCATAAAGCCTTCCAAAAAGAGTTGGGGAAGAGGACCAGCAGTGTGCAGGCCCTGAAGC GCTCAGCCCGAGAACTCATAGAAGGCAGTCGGGATGACTCCTCCTGGGTCAAGGTCCAGATGCAGGAATTAAGCACACGCTGGGAGACCG TGTGTGCACTTTCTATATCAAAGCAAACACGGTTAGAAGCAGCCCTGCGTCAGACAAAACAAATTGGAGGAAGCCCTGTTATTTTCTGGA CAATTCACAGATGCCCTACAGGCTCTCATTGATTGGTTATATAGAGTTGAACCCCAGCTGGCAGAAGACCAGCCTGTTCATGGAGACATT GATTTGGTGATGAATCTGATCGATAATCACAAGGAGTTTCAGAAATCACTCGGAGCCAAGCATTCTGTCTACGACACCACCAACAGGACT GGACGTTCTCTGAAGGAGAAAACCTCCCTGGCTGATGACAACCTGAAACTGGATGACATGCTGAGTGAACTCAGAGACAAATGGGATACC ATATGTGGAAAATCTGTGGAAAGTTCCATGAAGCTTGGAGTAAACTTATGGAGTGGCTAGAAGAGTCAGAAAAGTCTTTGGATTCTGAAC TGGAAATCGCAAATGATCCAGACAAAATAAAAACACAACTTGCACAACATAAGGTTTTTGCCAATGAAGTAAATTCTCATCGTGAGCAGA TAATAGAGCTGGACAAAACTGGAACCCACCTAAAATATTTTAGTCAGAAACAAGATGTTGTTCTAATCAAGAATCTACTTATCAGTGTAC AAAGTCGATGGGAAAAAGTGGTTCAACGGTTGGTAGAGAGAGGAAGATCTTTGGATGATGCAAGGAAGAGAGCCAAGCAGACTAAACTGG AAGAGGCTCTCAACTTGGCAATGGAGTTCCACAATTCTCTCCAAGACTTCATCAACTGGCTTACTCAGGCTGAACAGACCCTAAATGTAG CTTCTCGGCCAAGTCTCATCTTGGACACAGTCTTATTTCAAATTGACGAACACAAGGAAGTCTGTGCTGCCTTTGAAGCTAAAGAAGAAA CATATAAGAGTCTGATGCAGAAAGGCCAGCAGATGCTTGCAAGATGCCCAAAATCTGCAGAGACAAATATTGACCAAGACATAAATAACT TGAAAGAAAAATGGGAATCGGTGGAAACCAAACTCAATGAAAGGAAAGCCAAAGGGTTCCATGGCGAAATTGAGGATTTGCAGCAGTGGC TGACTGACACGGAGCGTCATCTGTTGGCATCTAAACCGCTGGGAGGTTTACCGGAAACAGCCAAGGAGCAGCTTAATGTCCATATGGTGC TCCAAAATGATGTATTAGCCCATCAGTCCACAGTGGAAGCCGTTAATAAAGCAGGAAATGATCTAATTGAATCAAGTGCAGGAGAAGAAG CAAGCAACCTTCAGAACAAGCTAGAGGTTTTAAATCAACGCTGGCAAAATGTTTTGGAAAAAACAGAACAAAGGAAGCAGCAGCTGGATG GTGCCTTGCGCCAGCATAAACTGGAGGGTGCTCTATTAGCCTTGGGTCAGTTCCAACATGCCCTGGATGAGCTCCTGGCATGGCTGACAC ACACCGAGGGCTTGCTAAGTGAGCAGAAACCTGTTGGAGGAGACCCTAAAGCCATTGAAATTGAACTTGCCAAGCATCATCAATTTAAGT CTGAGGCCTATCAACAGCAGATAGAAATGGAAAGACTGAATCATCAAGCAGAGCTTTTGCTAAAGAAAGTAACAGAAGAGAGTGACAAAC ACACTGTTCAAGACCCATTAATGGAACTGAAATTGATATGGGATAGCCTGGAGGAGAGAATCATCAACAGACAGGCGGTATTTGACTGGG TAGATATTGCAGGTGGTAAATTAGCTTCAATGTCTCCAATTGGAACAGATCTCGAAACTGTCAAGCAGCAGATTGAAGAGCTAAAGTTAA ATTCAGCATGGGATTCTCTAAATAAAGCTTGGAAAGACCGGATTGACAAACTTGAGGAGGCAATGCAGGCTGCCGTTCAGTACCAGGATG GACTGCAGACCATAAGGGAAGAAATAGATGGACTACAGGAGGAGCTGGATATAGTTATTAACCTAGGTTCTGAACTCATTGCGGCATGTG GGGAGCCTGATAAACCCATTGTCAAGAAGAGTATAGATGAGCTGTTCAGGATAAGCTTGACCAAATGGTTTTCATTTGGGAGAACATACA CACACTGGTGGAAGAGAGGGAAGCCAAACTACTGGATGTGATGGAGCTAGCAGAAAAGTTCTGGTGTGATCACATGTCATTGATAGTTAC CATTAAAGATACTCAAGATTTCATCCGGGACCTGGAAGATCCTGGAATTGATCCTTCAGTAGTAAAACAACAGCAAGAAGCAGCAGAGTT CCATGACAAGATAGATCAGATCCTTGAGAGCCTGGAACGCATCGTGGAACGTCTGAGGCAGCCACCCTCTATCTCTGCAGAGGTTGAGAA GATCAAGGAACAGATCAGTGAAAATAAGAATGTGTCAGTAGACATGGAAAAGCTACAGCCGTTGTATGAAACTCTTAAACAGAGGGGAGA GGAAATGATTGCTAGATCTGGGGGGACTGATAAAGACATATCTGCCAAAGCAACTGCGTGAGTTGATAGCTGAACACAAGCCTCATATAG ATAAGATGAACAAAACTGGGCCACAGTTACTGGAATTGAGCCCTGGGGAAGGCTTTTCTATCCAAGAGAAGTATGTGGCAGCCGACACCC TTTACAGTCAAATTAAAGAAGATGTCAAAAAGCGTGCTGTGGCACTGGATGAAGCCATTTCTCAATCAACTCAGAAAAAACTGGACAAGG TACTGAAGAACTATGATACCATCTGCCAGATTAATTCAGAAAGGTATCTGCAGCTGGAACGGGCACAGTCCCTGGTTAACCAATTCTGGG AAACATATGAAGAACTTTGGCCATGGCTGACAGAAACACAATCAATCATCTCTCAGCTTCCCGCCCCAGCCCTTGAATATGAAACTCTAA GGCAGCAGCAGGAAGAACATCGGACATTCACCATGGAGATTTTGAGACACAAGGATATTATTGATGACCTTGTTAAATCTGGGCATAAAA TCATGACCGCATGCAGTGAAGAGGAAAAGCAATCAATGAAGGTGACATCAGGCTTGAGCAAGACCAGACTTCTGCTCAGCTTCAAGTTCA >34015_34015_2_GORAB-DST_GORAB_chr1_170521415_ENST00000367763_DST_chr6_56382351_ENST00000421834_length(amino acids)=586AA_BP= MGYHMWKICGKFHEAWSKLMEWLEESEKSLDSELEIANDPDKIKTQLAQHKVFANEVNSHREQIIELDKTGTHLKYFSQKQDVVLIKNLL ISVQSRWEKVVQRLVERGRSLDDARKRAKQTKLEEALNLAMEFHNSLQDFINWLTQAEQTLNVASRPSLILDTVLFQIDEHKEVCAAFEA KEETYKSLMQKGQQMLARCPKSAETNIDQDINNLKEKWESVETKLNERKAKGFHGEIEDLQQWLTDTERHLLASKPLGGLPETAKEQLNV HMVLQNDVLAHQSTVEAVNKAGNDLIESSAGEEASNLQNKLEVLNQRWQNVLEKTEQRKQQLDGALRQHKLEGALLALGQFQHALDELLA WLTHTEGLLSEQKPVGGDPKAIEIELAKHHQFKSEAYQQQIEMERLNHQAELLLKKVTEESDKHTVQDPLMELKLIWDSLEERIINRQAV FDWVDIAGGKLASMSPIGTDLETVKQQIEELKLNSAWDSLNKAWKDRIDKLEEAMQAAVQYQDGLQTIREEIDGLQEELDIVINLGSELI -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for GORAB-DST |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for GORAB-DST |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for GORAB-DST |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |