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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:GPR35-ANKMY1 (FusionGDB2 ID:34437)

Fusion Gene Summary for GPR35-ANKMY1

check button Fusion gene summary
Fusion gene informationFusion gene name: GPR35-ANKMY1
Fusion gene ID: 34437
HgeneTgene
Gene symbol

GPR35

ANKMY1

Gene ID

2859

51281

Gene nameG protein-coupled receptor 35ankyrin repeat and MYND domain containing 1
Synonyms-ZMYND13
Cytomap

2q37.3

2q37.3

Type of geneprotein-codingprotein-coding
DescriptionG-protein coupled receptor 35KYNA receptorkynurenic acid receptorankyrin repeat and MYND domain-containing protein 1testis-specific ankyrin-like protein 1zinc finger MYND domain-containing protein 13
Modification date2020031320200313
UniProtAcc.

Q9P2S6

Ensembl transtripts involved in fusion geneENST00000438013, ENST00000319838, 
ENST00000403859, ENST00000407714, 
ENST00000430267, 		ENST00000272972, 
ENST00000361678, ENST00000373318, 
ENST00000373320, ENST00000391987, 
ENST00000401804, ENST00000403283, 
ENST00000405002, ENST00000405523, 
ENST00000406958, ENST00000462004, 
ENST00000536462, 
Fusion gene scores* DoF score5 X 3 X 5=751 X 1 X 1=1
# samples 51
** MAII scorelog2(5/75*10)=-0.584962500721156
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(1/1*10)=3.32192809488736
Context

PubMed: GPR35 [Title/Abstract] AND ANKMY1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointANKMY1(241492331)-GPR35(241569366), # samples:3
GPR35(241558448)-ANKMY1(241468926), # samples:4
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneGPR35

GO:0007186

G protein-coupled receptor signaling pathway

16754668

HgeneGPR35

GO:0070098

chemokine-mediated signaling pathway

25411203


check buttonFusion gene breakpoints across GPR35 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across ANKMY1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PAADTCGA-2J-AABR-01AGPR35chr2

241558448

-ANKMY1chr2

241468926

-
ChimerDB4PAADTCGA-2J-AABRGPR35chr2

241558448

+ANKMY1chr2

241468926

-
ChimerDB4PAADTCGA-FB-AAPZ-01AGPR35chr2

241558448

-ANKMY1chr2

241468926

-
ChimerDB4PAADTCGA-FB-AAPZGPR35chr2

241558448

+ANKMY1chr2

241468926

-


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Fusion Gene ORF analysis for GPR35-ANKMY1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000438013ENST00000272972GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000361678GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000373318GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000373320GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000391987GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000401804GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000403283GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000405002GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000405523GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000406958GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000462004GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5CDS-intronENST00000438013ENST00000536462GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000272972GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000361678GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000373318GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000373320GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000391987GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000401804GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000403283GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000405002GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000405523GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000406958GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000462004GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000319838ENST00000536462GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000272972GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000361678GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000373318GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000373320GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000391987GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000401804GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000403283GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000405002GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000405523GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000406958GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000462004GPR35chr2

241558448

+ANKMY1chr2

241468926

-
5UTR-intronENST00000403859ENST00000536462GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000272972GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000361678GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000373318GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000373320GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000391987GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000401804GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000403283GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000405002GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000405523GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000406958GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000462004GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000407714ENST00000536462GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000272972GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000361678GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000373318GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000373320GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000391987GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000401804GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000403283GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000405002GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000405523GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000406958GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000462004GPR35chr2

241558448

+ANKMY1chr2

241468926

-
intron-intronENST00000430267ENST00000536462GPR35chr2

241558448

+ANKMY1chr2

241468926

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for GPR35-ANKMY1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for GPR35-ANKMY1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:241492331/:241569366)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
.ANKMY1

Q9P2S6

FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for GPR35-ANKMY1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for GPR35-ANKMY1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for GPR35-ANKMY1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for GPR35-ANKMY1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource