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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:HGD-CACNA1D (FusionGDB2 ID:36241) |
Fusion Gene Summary for HGD-CACNA1D |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: HGD-CACNA1D | Fusion gene ID: 36241 | Hgene | Tgene | Gene symbol | HGD | CACNA1D | Gene ID | 3081 | 776 |
| Gene name | homogentisate 1,2-dioxygenase | calcium voltage-gated channel subunit alpha1 D | |
| Synonyms | AKU|HGO | CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD | |
| Cytomap | 3q13.33 | 3p21.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | homogentisate 1,2-dioxygenasehomogentisate oxidasehomogentisate oxygenasehomogentisic acid oxidasehomogentisicase | voltage-dependent L-type calcium channel subunit alpha-1Dcalcium channel, L type, alpha-1 polypeptidecalcium channel, neuroendocrine/brain-type, alpha 1 subunitcalcium channel, voltage-dependent, L type, alpha 1D subunitvoltage-gated calcium channel a | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q93099 | Q01668 | |
| Ensembl transtripts involved in fusion gene | ENST00000283871, ENST00000488183, | ENST00000498251, ENST00000540742, ENST00000544977, ENST00000288139, ENST00000350061, ENST00000422281, | |
| Fusion gene scores | * DoF score | 4 X 4 X 3=48 | 5 X 6 X 3=90 |
| # samples | 4 | 6 | |
| ** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: HGD [Title/Abstract] AND CACNA1D [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | HGD(120389274)-CACNA1D(53777038), # samples:3 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | CACNA1D | GO:0006816 | calcium ion transport | 11160515 |
| Tgene | CACNA1D | GO:0051928 | positive regulation of calcium ion transport | 1309651 |
| Tgene | CACNA1D | GO:0070509 | calcium ion import | 1309651 |
| Fusion gene breakpoints across HGD (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across CACNA1D (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | PRAD | TCGA-EJ-5516-01A | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| ChimerDB4 | PRAD | TCGA-EJ-5516 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
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Fusion Gene ORF analysis for HGD-CACNA1D |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000283871 | ENST00000498251 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5CDS-intron | ENST00000283871 | ENST00000540742 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5CDS-intron | ENST00000283871 | ENST00000544977 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-3CDS | ENST00000488183 | ENST00000288139 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-3CDS | ENST00000488183 | ENST00000350061 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-3CDS | ENST00000488183 | ENST00000422281 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-intron | ENST00000488183 | ENST00000498251 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-intron | ENST00000488183 | ENST00000540742 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| 5UTR-intron | ENST00000488183 | ENST00000544977 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| In-frame | ENST00000283871 | ENST00000288139 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| In-frame | ENST00000283871 | ENST00000350061 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| In-frame | ENST00000283871 | ENST00000422281 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000283871 | HGD | chr3 | 120389274 | - | ENST00000350061 | CACNA1D | chr3 | 53777038 | + | 5056 | 742 | 460 | 4416 | 1318 |
| ENST00000283871 | HGD | chr3 | 120389274 | - | ENST00000288139 | CACNA1D | chr3 | 53777038 | + | 6744 | 742 | 460 | 4416 | 1318 |
| ENST00000283871 | HGD | chr3 | 120389274 | - | ENST00000422281 | CACNA1D | chr3 | 53777038 | + | 4345 | 742 | 460 | 4344 | 1295 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000283871 | ENST00000350061 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + | 0.001007643 | 0.9989924 |
| ENST00000283871 | ENST00000288139 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + | 0.000334888 | 0.99966514 |
| ENST00000283871 | ENST00000422281 | HGD | chr3 | 120389274 | - | CACNA1D | chr3 | 53777038 | + | 0.001692282 | 0.9983077 |
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Fusion Genomic Features for HGD-CACNA1D |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| HGD | chr3 | 120389273 | - | CACNA1D | chr3 | 53777037 | + | 2.93E-07 | 0.99999976 |
| HGD | chr3 | 120389273 | - | CACNA1D | chr3 | 53777037 | + | 2.93E-07 | 0.99999976 |
| HGD | chr3 | 120389273 | - | CACNA1D | chr3 | 53777037 | + | 2.93E-07 | 0.99999976 |
| HGD | chr3 | 120389273 | - | CACNA1D | chr3 | 53777037 | + | 2.93E-07 | 0.99999976 |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for HGD-CACNA1D |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr3:120389274/chr3:53777038) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| HGD | CACNA1D |
| FUNCTION: Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1D gives rise to L-type calcium currents. Long-lasting (L-type) calcium channels belong to the 'high-voltage activated' (HVA) group. They are blocked by dihydropyridines (DHP), phenylalkylamines, and by benzothiazepines. {ECO:0000269|PubMed:18482979, ECO:0000269|PubMed:25620733, ECO:0000269|PubMed:28472301}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1493_1504 | 957 | 2182.0 | Calcium binding | Ontology_term=ECO:0000250 | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1493_1504 | 937 | 2162.0 | Calcium binding | Ontology_term=ECO:0000250 | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1493_1504 | 937 | 2138.0 | Calcium binding | Ontology_term=ECO:0000250 | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1075_1165 | 957 | 2182.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1420_1486 | 957 | 2182.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1432_1475 | 957 | 2182.0 | Region | Phenylalkylamine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1075_1165 | 937 | 2162.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1420_1486 | 937 | 2162.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1432_1475 | 937 | 2162.0 | Region | Phenylalkylamine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1075_1165 | 937 | 2138.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1420_1486 | 937 | 2138.0 | Region | Dihydropyridine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1432_1475 | 937 | 2138.0 | Region | Phenylalkylamine binding | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1192_1467 | 957 | 2182.0 | Repeat | Note=IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1192_1467 | 937 | 2162.0 | Repeat | Note=IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1192_1467 | 937 | 2138.0 | Repeat | Note=IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1038_1127 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1149_1205 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1225_1239 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1260_1266 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1289_1313 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1334_1352 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1373_1439 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1465_2161 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 973_978 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 999_1017 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1038_1127 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1149_1205 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1225_1239 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1260_1266 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1289_1313 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1334_1352 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1373_1439 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1465_2161 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 942_953 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 973_978 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 999_1017 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1038_1127 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1149_1205 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1225_1239 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1260_1266 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1289_1313 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1334_1352 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1373_1439 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1465_2161 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 942_953 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 973_978 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 999_1017 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1018_1037 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS5 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1128_1148 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS6 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1206_1224 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS1 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1240_1259 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS2 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1267_1288 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS3 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1314_1333 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS4 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1353_1372 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS5 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1440_1464 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS6 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 954_972 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS3 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 979_998 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS4 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1018_1037 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS5 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1128_1148 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS6 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1206_1224 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS1 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1240_1259 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS2 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1267_1288 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS3 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1314_1333 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS4 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1353_1372 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS5 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1440_1464 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS6 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 954_972 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS3 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 979_998 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS4 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1018_1037 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS5 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1128_1148 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS6 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1206_1224 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS1 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1240_1259 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS2 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1267_1288 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS3 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1314_1333 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS4 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1353_1372 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS5 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1440_1464 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS6 of repeat IV | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 954_972 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS3 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 979_998 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS4 of repeat III |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1_7 | 957 | 2182.0 | Compositional bias | Note=Poly-Met | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 653_659 | 957 | 2182.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 827_838 | 957 | 2182.0 | Compositional bias | Note=Poly-Glu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1_7 | 937 | 2162.0 | Compositional bias | Note=Poly-Met | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 653_659 | 937 | 2162.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 827_838 | 937 | 2162.0 | Compositional bias | Note=Poly-Glu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1_7 | 937 | 2138.0 | Compositional bias | Note=Poly-Met | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 653_659 | 937 | 2138.0 | Compositional bias | Note=Poly-Leu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 827_838 | 937 | 2138.0 | Compositional bias | Note=Poly-Glu | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 429_446 | 957 | 2182.0 | Region | Binding to the beta subunit | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 429_446 | 937 | 2162.0 | Region | Binding to the beta subunit | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 429_446 | 937 | 2138.0 | Region | Binding to the beta subunit | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 113_409 | 957 | 2182.0 | Repeat | Note=I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 509_755 | 957 | 2182.0 | Repeat | Note=II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 873_1155 | 957 | 2182.0 | Repeat | Note=III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 113_409 | 937 | 2162.0 | Repeat | Note=I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 509_755 | 937 | 2162.0 | Repeat | Note=II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 873_1155 | 937 | 2162.0 | Repeat | Note=III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 113_409 | 937 | 2138.0 | Repeat | Note=I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 509_755 | 937 | 2138.0 | Repeat | Note=II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 873_1155 | 937 | 2138.0 | Repeat | Note=III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 146_163 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 184_195 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 1_126 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 215_235 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 255_273 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 294_381 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 407_523 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 544_558 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 578_585 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 605_614 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 634_652 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 674_727 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 753_886 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 906_921 | 957 | 2182.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 942_953 | 957 | 2182.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 146_163 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 184_195 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 1_126 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 215_235 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 255_273 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 294_381 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 407_523 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 544_558 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 578_585 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 605_614 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 634_652 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 674_727 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 753_886 | 937 | 2162.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 906_921 | 937 | 2162.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 146_163 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 184_195 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 1_126 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 215_235 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 255_273 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 294_381 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 407_523 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 544_558 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 578_585 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 605_614 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 634_652 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 674_727 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 753_886 | 937 | 2138.0 | Topological domain | Cytoplasmic | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 906_921 | 937 | 2138.0 | Topological domain | Extracellular | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 127_145 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 164_183 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 196_214 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 236_254 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 274_293 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 382_406 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 524_543 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 559_577 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 586_604 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 615_633 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 653_673 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 728_752 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 887_905 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS1 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000288139 | 21 | 49 | 922_941 | 957 | 2182.0 | Transmembrane | Helical%3B Name%3DS2 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 127_145 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 164_183 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 196_214 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 236_254 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 274_293 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 382_406 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 524_543 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 559_577 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 586_604 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 615_633 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 653_673 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 728_752 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 887_905 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS1 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000350061 | 20 | 48 | 922_941 | 937 | 2162.0 | Transmembrane | Helical%3B Name%3DS2 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 127_145 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS1 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 164_183 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS2 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 196_214 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS3 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 236_254 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS4 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 274_293 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS5 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 382_406 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS6 of repeat I | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 524_543 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS1 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 559_577 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS2 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 586_604 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS3 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 615_633 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS4 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 653_673 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS5 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 728_752 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS6 of repeat II | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 887_905 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS1 of repeat III | |
| Tgene | CACNA1D | chr3:120389274 | chr3:53777038 | ENST00000422281 | 20 | 46 | 922_941 | 937 | 2138.0 | Transmembrane | Helical%3B Name%3DS2 of repeat III |
Top |
Fusion Gene Sequence for HGD-CACNA1D |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >36241_36241_1_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000288139_length(transcript)=6744nt_BP=742nt CTCCAGGAGACTCAGCACTGCCCTGTTCCTTCCTAGCCTGAGTCAGGACTGAGCAGAGAATCCTCCACCACACACAGCAGGCACTATCTG CCACAGTTCCTTTCCCCGATAGCTTCAAATTCTCTGCCTTTTGAAATAAGCCTACTTTTAACTGGAATAAATAATTGGTCAATCTCTACC TCAGGTGAAGAGGAACCAAGCCTCTGGAAACACTTAGGAACAAACTGTAAAAACCAAAGGCAATTGTGTAACCGGTTAAATAAGCTTGCT GGACTTTGTCCCTGTGTATGAGTTAGACAATTCTTTCAGCTAGTTTGAGTGACGCACTGACCAGTGAAGCGCAGTGAAGCAGTGGGAACC GGAATATCCAAAGAGTGGTTTGAAGGAGAAAGAAGCATTGTGGCTTTATATCCTCTGGGCCTGGGTTTCCTGAAGTCACCACACATAGAG GAGAGAGAAAATGGCTGAGTTAAAGTACATTTCTGGATTTGGGAATGAGTGTTCTTCAGAGGATCCTCGCTGCCCAGGTTCCCTGCCAGA AGGACAGAATAATCCTCAGGTCTGCCCCTACAATCTCTATGCTGAGCAGCTCTCAGGATCGGCTTTCACTTGTCCACGGAGCACCAATAA GAGAAGCTGGCTGTATAGGATTCTACCTTCAGTTTCTCACAAGCCCTTTGAATCCATTGACGAAGGCCAAGTCACTCACAACTGGGATGA AGTTGATCCTGATCCTAACCAGATGACAACTTTTGGAGCTTTCCTCCACAAAGGGGCCTTCTGCAGGAACTACTTCAATTTGCTGGATAT GCTGGTGGTTGGGGTGTCTCTGGTGTCATTTGGGATTCAATCCAGTGCCATCTCCGTTGTGAAGATTCTGAGGGTCTTAAGGGTCCTGCG TCCCCTCAGGGCCATCAACAGAGCAAAAGGACTTAAGCACGTGGTCCAGTGCGTCTTCGTGGCCATCCGGACCATCGGCAACATCATGAT CGTCACCACCCTCCTGCAGTTCATGTTTGCCTGTATCGGGGTCCAGTTGTTCAAGGGGAAGTTCTATCGCTGTACGGATGAAGCCAAAAG TAACCCTGAAGAATGCAGGGGACTTTTCATCCTCTACAAGGATGGGGATGTTGACAGTCCTGTGGTCCGTGAACGGATCTGGCAAAACAG TGATTTCAACTTCGACAACGTCCTCTCTGCTATGATGGCGCTCTTCACAGTCTCCACGTTTGAGGGCTGGCCTGCGTTGCTGTATAAAGC CATCGACTCGAATGGAGAGAACATCGGCCCAATCTACAACCACCGCGTGGAGATCTCCATCTTCTTCATCATCTACATCATCATTGTAGC TTTCTTCATGATGAACATCTTTGTGGGCTTTGTCATCGTTACATTTCAGGAACAAGGAGAAAAAGAGTATAAGAACTGTGAGCTGGACAA AAATCAGCGTCAGTGTGTTGAATACGCCTTGAAAGCACGTCCCTTGCGGAGATACATCCCCAAAAACCCCTACCAGTACAAGTTCTGGTA CGTGGTGAACTCTTCGCCTTTCGAATACATGATGTTTGTCCTCATCATGCTCAACACACTCTGCTTGGCCATGCAGCACTACGAGCAGTC CAAGATGTTCAATGATGCCATGGACATTCTGAACATGGTCTTCACCGGGGTGTTCACCGTCGAGATGGTTTTGAAAGTCATCGCATTTAA GCCTAAGGGGTATTTTAGTGACGCCTGGAACACGTTTGACTCCCTCATCGTAATCGGCAGCATTATAGACGTGGCCCTCAGCGAAGCAGA CCCAACTGAAAGTGAAAATGTCCCTGTCCCAACTGCTACACCTGGGAACTCTGAAGAGAGCAATAGAATCTCCATCACCTTTTTCCGTCT TTTCCGAGTGATGCGATTGGTGAAGCTTCTCAGCAGGGGGGAAGGCATCCGGACATTGCTGTGGACTTTTATTAAGTCCTTTCAGGCGCT CCCGTATGTGGCCCTCCTCATAGCCATGCTGTTCTTCATCTATGCGGTCATTGGCATGCAGATGTTTGGGAAAGTTGCCATGAGAGATAA CAACCAGATCAATAGGAACAATAACTTCCAGACGTTTCCCCAGGCGGTGCTGCTGCTCTTCAGGTGTGCAACAGGTGAGGCCTGGCAGGA GATCATGCTGGCCTGTCTCCCAGGGAAGCTCTGTGACCCTGAGTCAGATTACAACCCCGGGGAGGAGTATACATGTGGGAGCAACTTTGC CATTGTCTATTTCATCAGTTTTTACATGCTCTGTGCATTTCTGATCATCAATCTGTTTGTGGCTGTCATCATGGATAATTTCGACTATCT GACCCGGGACTGGTCTATTTTGGGGCCTCACCATTTAGATGAATTCAAAAGAATATGGTCAGAATATGACCCTGAGGCAAAGGGAAGGAT AAAACACCTTGATGTGGTCACTCTGCTTCGACGCATCCAGCCTCCCCTGGGGTTTGGGAAGTTATGTCCACACAGGGTAGCGTGCAAGAG ATTAGTTGCCATGAACATGCCTCTCAACAGTGACGGGACAGTCATGTTTAATGCAACCCTGTTTGCTTTGGTTCGAACGGCTCTTAAGAT CAAGACCGAAGGGAACCTGGAGCAAGCTAATGAAGAACTTCGGGCTGTGATAAAGAAAATTTGGAAGAAAACCAGCATGAAATTACTTGA CCAAGTTGTCCCTCCAGCTGGTGATGATGAGGTAACCGTGGGGAAGTTCTATGCCACTTTCCTGATACAGGACTACTTTAGGAAATTCAA GAAACGGAAAGAACAAGGACTGGTGGGAAAGTACCCTGCGAAGAACACCACAATTGCCCTACAGGCGGGATTAAGGACACTGCATGACAT TGGGCCAGAAATCCGGCGTGCTATATCGTGTGATTTGCAAGATGACGAGCCTGAGGAAACAAAACGAGAAGAAGAAGATGATGTGTTCAA AAGAAATGGTGCCCTGCTTGGAAACCATGTCAATCATGTTAATAGTGATAGGAGAGATTCCCTTCAGCAGACCAATACCACCCACCGTCC CCTGCATGTCCAAAGGCCTTCAATTCCACCTGCAAGTGATACTGAGAAACCGCTGTTTCCTCCAGCAGGAAATTCGGTGTGTCATAACCA TCATAACCATAATTCCATAGGAAAGCAAGTTCCCACCTCAACAAATGCCAATCTCAATAATGCCAATATGTCCAAAGCTGCCCATGGAAA GCGGCCCAGCATTGGGAACCTTGAGCATGTGTCTGAAAATGGGCATCATTCTTCCCACAAGCATGACCGGGAGCCTCAGAGAAGGTCCAG TGTGAAAAGAACCCGCTATTATGAAACTTACATTAGGTCCGACTCAGGAGATGAACAGCTCCCAACTATTTGCCGGGAAGACCCAGAGAT ACATGGCTATTTCAGGGACCCCCACTGCTTGGGGGAGCAGGAGTATTTCAGTAGTGAGGAATGCTACGAGGATGACAGCTCGCCCACCTG GAGCAGGCAAAACTATGGCTACTACAGCAGATACCCAGGCAGAAACATCGACTCTGAGAGGCCCCGAGGCTACCATCATCCCCAAGGATT CTTGGAGGACGATGACTCGCCCGTTTGCTATGATTCACGGAGATCTCCAAGGAGACGCCTACTACCTCCCACCCCAGCATCCCACCGGAG ATCCTCCTTCAACTTTGAGTGCCTGCGCCGGCAGAGCAGCCAGGAAGAGGTCCCGTCGTCTCCCATCTTCCCCCATCGCACGGCCCTGCC TCTGCATCTAATGCAGCAACAGATCATGGCAGTTGCCGGCCTAGATTCAAGTAAAGCCCAGAAGTACTCACCGAGTCACTCGACCCGGTC GTGGGCCACCCCTCCAGCAACCCCTCCCTACCGGGACTGGACACCGTGCTACACCCCCCTGATCCAAGTGGAGCAGTCAGAGGCCCTGGA CCAGGTGAACGGCAGCCTGCCGTCCCTGCACCGCAGCTCCTGGTACACAGACGAGCCCGACATCTCCTACCGGACTTTCACACCAGCCAG CCTGACTGTCCCCAGCAGCTTCCGGAACAAAAACAGCGACAAGCAGAGGAGTGCGGACAGCTTGGTGGAGGCAGTCCTGATATCCGAAGG CTTGGGACGCTATGCAAGGGACCCAAAATTTGTGTCAGCAACAAAACACGAAATCGCTGATGCCTGTGACCTCACCATCGACGAGATGGA GAGTGCAGCCAGCACCCTGCTTAATGGGAACGTGCGTCCCCGAGCCAACGGGGATGTGGGCCCCCTCTCACACCGGCAGGACTATGAGCT ACAGGACTTTGGTCCTGGCTACAGCGACGAAGAGCCAGACCCTGGGAGGGATGAGGAGGACCTGGCGGATGAAATGATATGCATCACCAC CTTGTAGCCCCCAGCGAGGGGCAGACTGGCTCTGGCCTCAGGTGGGGCGCAGGAGAGCCAGGGGAAAAGTGCCTCATAGTTAGGAAAGTT TAGGCACTAGTTGGGAGTAATATTCAATTAATTAGACTTTTGTATAAGAGATGTCATGCCTCAAGAAAGCCATAAACCTGGTAGGAACAG GTCCCAAGCGGTTGAGCCTGGCAGAGTACCATGCGCTCGGCCCCAGCTGCAGGAAACAGCAGGCCCCGCCCTCTCACAGAGGATGGGTGA GGAGGCCAGACCTGCCCTGCCCCATTGTCCAGATGGGCACTGCTGTGGAGTCTGCTTCTCCCATGTACCAGGGCACCAGGCCCACCCAAC TGAAGGCATGGCGGCGGGGTGCAGGGGAAAGTTAAAGGTGATGACGATCATCACACCTGTGTCGTTACCTCAGCCATCGGTCTAGCATAT CAGTCACTGGGCCCAACATATCCATTTTTAAACCCTTTCCCCCAAATACACTGCGTCCTGGTTCCTGTTTAGCTGTTCTGAAATACGGTG TGTAAGTAAGTCAGAACCCAGCTACCAGTGATTATTGCGAGGGCAATGGGACCTCATAAATAAGGTTTTCTGTGATGTGACGCCAGTTTA CATAAGAGAATATCACTCCGATGGTCGGTTTCTGACTGTCACGCTAAGGGCAACTGTAAACTGGAATAATAATGCACTCGCAACCAGGTA AACTTAGATACACTAGTTTGTTTAAAATTATAGATTTACTGTACATGACTTGTAATATACTATAATTTGTATTTGTAAAGAGATGGTCTA TATTTTGTAATTACTGTATTGTATTTGAACTGCAGCAATATCCATGGGTCCTAATAATTGTAGTTCCCCACTAAAATCTAGAAATTATTA GTATTTTTACTCGGGCTATCCAGAAGTAGAAGAAATAGAGCCAATTCTCATTTATTCAGCGAAAATCCTCTGGGGTTAAAATTTTAAGTT TGAAAGAACTTGACACTACAGAAATTTTTCTAAAATATTTTGAGTCACTATAAACCTATCATCTTTCCACAAGATATACCAGATGACTAT TTGCAGTCTTTTCTTTGGGCAAGAGTTCCATGATTTTGATACTGTACCTTTGGATCCACCATGGGTTGCAACTGTCTTTGGTTTTGTTTG TTTGACTTGAACCACCCTCTGGTAAGTAAGTAAGTGAATTACAGAGCAGGTCCAGCTGGCTGCTCTGCCCCTTGGGTATCCATAGTTACG GTTTTCTCTGTGGCCCACCCAGGGTGTTTTTTGCATCGCTGGTGCAGAAATGCATAGGTGGATGAGATATAGCTGCTCTTGTCCTCTGGG GACTGGTGGTGCTGCTTAAGAAATAAGGGGTGCTGGGGACAGAGGAGCAACGTGGTGATCTATAGGATTGGAGTGTCGGGGTCTGTACAA ATCGTATTGTTGCCTTTTACAAAACTGCTGTACTGTATGTTCTCTTTGAGGGCTTTTATATGCAATTGAATGAGGGCTGAAGTTTTCATT AGAATGCACTCACACTCTGACTGTACGTCCTGATGAAAACCCACTTTTGGATAATTAGAACCGTCAAGGCTTCATTTTCTGTCAACAGAA TTAGGCCGACTGTCAGGTTACCTTGGCAGGGATTCCCTGCAATCAAAAAGATAGATGATAGGTAGCAATTTTGGTCCAAAATTTTTAATA GTATACAGACAACCTGTTAATTTTTTTTTTTTTTTTTTTTTTTGTAAATAACAAACACCACTTTGTTATGAAGACCTTACAAACCTCTTC TTAAGACATTCTTACTCTGATCCAGGCAAAAACACTTCAAGGTTTGTAAATGACTCTTTCCTGACATAAATCCTTTTTTATTAAAATGCA AAATGTTCTTCAGAATAAAACTGTGTAATAATTTTTATACTTGGGAGTGCTCCTTGCACAGAGCTGTCATTTGCCAGTGAGAGCCTCCGA CAGGGCAGGTACTGTGCCAGGGCAGCTCTGAAATTATGGATATTCTTATCCTCCTGGTTCCTTCGGTGCCAATGGTAACCTAATACCAGC CGCAGGGAGCGCCATTTCTCCTAAAGGGCTACACCACTGTCAACATTATCCTGGACTCTGTGTCTCTCTCTGTTGGGTCTTGTGGCATCA CATCAGGCCAAAATTGCCAGACCAGGACCCTAAGTGTCTGATAGAGGCGATGATCTTTTCCAAAGTCAGTACTTACAAACTGGCATTCTT >36241_36241_1_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000288139_length(amino acids)=1318AA_BP=94 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGQVTHNWDEVDP DPNQMTTFGAFLHKGAFCRNYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTT LLQFMFACIGVQLFKGKFYRCTDEAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDS NGENIGPIYNHRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYVVN SSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADPTE SENVPVPTATPGNSEESNRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQMFGKVAMRDNNQI NRNNNFQTFPQAVLLLFRCATGEAWQEIMLACLPGKLCDPESDYNPGEEYTCGSNFAIVYFISFYMLCAFLIINLFVAVIMDNFDYLTRD WSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTE GNLEQANEELRAVIKKIWKKTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGKYPAKNTTIALQAGLRTLHDIGPE IRRAISCDLQDDEPEETKREEEDDVFKRNGALLGNHVNHVNSDRRDSLQQTNTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHNHHNH NSIGKQVPTSTNANLNNANMSKAAHGKRPSIGNLEHVSENGHHSSHKHDREPQRRSSVKRTRYYETYIRSDSGDEQLPTICREDPEIHGY FRDPHCLGEQEYFSSEECYEDDSSPTWSRQNYGYYSRYPGRNIDSERPRGYHHPQGFLEDDDSPVCYDSRRSPRRRLLPPTPASHRRSSF NFECLRRQSSQEEVPSSPIFPHRTALPLHLMQQQIMAVAGLDSSKAQKYSPSHSTRSWATPPATPPYRDWTPCYTPLIQVEQSEALDQVN GSLPSLHRSSWYTDEPDISYRTFTPASLTVPSSFRNKNSDKQRSADSLVEAVLISEGLGRYARDPKFVSATKHEIADACDLTIDEMESAA -------------------------------------------------------------- >36241_36241_2_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000350061_length(transcript)=5056nt_BP=742nt CTCCAGGAGACTCAGCACTGCCCTGTTCCTTCCTAGCCTGAGTCAGGACTGAGCAGAGAATCCTCCACCACACACAGCAGGCACTATCTG CCACAGTTCCTTTCCCCGATAGCTTCAAATTCTCTGCCTTTTGAAATAAGCCTACTTTTAACTGGAATAAATAATTGGTCAATCTCTACC TCAGGTGAAGAGGAACCAAGCCTCTGGAAACACTTAGGAACAAACTGTAAAAACCAAAGGCAATTGTGTAACCGGTTAAATAAGCTTGCT GGACTTTGTCCCTGTGTATGAGTTAGACAATTCTTTCAGCTAGTTTGAGTGACGCACTGACCAGTGAAGCGCAGTGAAGCAGTGGGAACC GGAATATCCAAAGAGTGGTTTGAAGGAGAAAGAAGCATTGTGGCTTTATATCCTCTGGGCCTGGGTTTCCTGAAGTCACCACACATAGAG GAGAGAGAAAATGGCTGAGTTAAAGTACATTTCTGGATTTGGGAATGAGTGTTCTTCAGAGGATCCTCGCTGCCCAGGTTCCCTGCCAGA AGGACAGAATAATCCTCAGGTCTGCCCCTACAATCTCTATGCTGAGCAGCTCTCAGGATCGGCTTTCACTTGTCCACGGAGCACCAATAA GAGAAGCTGGCTGTATAGGATTCTACCTTCAGTTTCTCACAAGCCCTTTGAATCCATTGACGAAGGCCAAGTCACTCACAACTGGGATGA AGTTGATCCTGATCCTAACCAGATGACAACTTTTGGAGCTTTCCTCCACAAAGGGGCCTTCTGCAGGAACTACTTCAATTTGCTGGATAT GCTGGTGGTTGGGGTGTCTCTGGTGTCATTTGGGATTCAATCCAGTGCCATCTCCGTTGTGAAGATTCTGAGGGTCTTAAGGGTCCTGCG TCCCCTCAGGGCCATCAACAGAGCAAAAGGACTTAAGCACGTGGTCCAGTGCGTCTTCGTGGCCATCCGGACCATCGGCAACATCATGAT CGTCACCACCCTCCTGCAGTTCATGTTTGCCTGTATCGGGGTCCAGTTGTTCAAGGGGAAGTTCTATCGCTGTACGGATGAAGCCAAAAG TAACCCTGAAGAATGCAGGGGACTTTTCATCCTCTACAAGGATGGGGATGTTGACAGTCCTGTGGTCCGTGAACGGATCTGGCAAAACAG TGATTTCAACTTCGACAACGTCCTCTCTGCTATGATGGCGCTCTTCACAGTCTCCACGTTTGAGGGCTGGCCTGCGTTGCTGTATAAAGC CATCGACTCGAATGGAGAGAACATCGGCCCAATCTACAACCACCGCGTGGAGATCTCCATCTTCTTCATCATCTACATCATCATTGTAGC TTTCTTCATGATGAACATCTTTGTGGGCTTTGTCATCGTTACATTTCAGGAACAAGGAGAAAAAGAGTATAAGAACTGTGAGCTGGACAA AAATCAGCGTCAGTGTGTTGAATACGCCTTGAAAGCACGTCCCTTGCGGAGATACATCCCCAAAAACCCCTACCAGTACAAGTTCTGGTA CGTGGTGAACTCTTCGCCTTTCGAATACATGATGTTTGTCCTCATCATGCTCAACACACTCTGCTTGGCCATGCAGCACTACGAGCAGTC CAAGATGTTCAATGATGCCATGGACATTCTGAACATGGTCTTCACCGGGGTGTTCACCGTCGAGATGGTTTTGAAAGTCATCGCATTTAA GCCTAAGGGGTATTTTAGTGACGCCTGGAACACGTTTGACTCCCTCATCGTAATCGGCAGCATTATAGACGTGGCCCTCAGCGAAGCAGA CCCAACTGAAAGTGAAAATGTCCCTGTCCCAACTGCTACACCTGGGAACTCTGAAGAGAGCAATAGAATCTCCATCACCTTTTTCCGTCT TTTCCGAGTGATGCGATTGGTGAAGCTTCTCAGCAGGGGGGAAGGCATCCGGACATTGCTGTGGACTTTTATTAAGTCCTTTCAGGCGCT CCCGTATGTGGCCCTCCTCATAGCCATGCTGTTCTTCATCTATGCGGTCATTGGCATGCAGATGTTTGGGAAAGTTGCCATGAGAGATAA CAACCAGATCAATAGGAACAATAACTTCCAGACGTTTCCCCAGGCGGTGCTGCTGCTCTTCAGGTGTGCAACAGGTGAGGCCTGGCAGGA GATCATGCTGGCCTGTCTCCCAGGGAAGCTCTGTGACCCTGAGTCAGATTACAACCCCGGGGAGGAGTATACATGTGGGAGCAACTTTGC CATTGTCTATTTCATCAGTTTTTACATGCTCTGTGCATTTCTGATCATCAATCTGTTTGTGGCTGTCATCATGGATAATTTCGACTATCT GACCCGGGACTGGTCTATTTTGGGGCCTCACCATTTAGATGAATTCAAAAGAATATGGTCAGAATATGACCCTGAGGCAAAGGGAAGGAT AAAACACCTTGATGTGGTCACTCTGCTTCGACGCATCCAGCCTCCCCTGGGGTTTGGGAAGTTATGTCCACACAGGGTAGCGTGCAAGAG ATTAGTTGCCATGAACATGCCTCTCAACAGTGACGGGACAGTCATGTTTAATGCAACCCTGTTTGCTTTGGTTCGAACGGCTCTTAAGAT CAAGACCGAAGGGAACCTGGAGCAAGCTAATGAAGAACTTCGGGCTGTGATAAAGAAAATTTGGAAGAAAACCAGCATGAAATTACTTGA CCAAGTTGTCCCTCCAGCTGGTGATGATGAGGTAACCGTGGGGAAGTTCTATGCCACTTTCCTGATACAGGACTACTTTAGGAAATTCAA GAAACGGAAAGAACAAGGACTGGTGGGAAAGTACCCTGCGAAGAACACCACAATTGCCCTACAGGCGGGATTAAGGACACTGCATGACAT TGGGCCAGAAATCCGGCGTGCTATATCGTGTGATTTGCAAGATGACGAGCCTGAGGAAACAAAACGAGAAGAAGAAGATGATGTGTTCAA AAGAAATGGTGCCCTGCTTGGAAACCATGTCAATCATGTTAATAGTGATAGGAGAGATTCCCTTCAGCAGACCAATACCACCCACCGTCC CCTGCATGTCCAAAGGCCTTCAATTCCACCTGCAAGTGATACTGAGAAACCGCTGTTTCCTCCAGCAGGAAATTCGGTGTGTCATAACCA TCATAACCATAATTCCATAGGAAAGCAAGTTCCCACCTCAACAAATGCCAATCTCAATAATGCCAATATGTCCAAAGCTGCCCATGGAAA GCGGCCCAGCATTGGGAACCTTGAGCATGTGTCTGAAAATGGGCATCATTCTTCCCACAAGCATGACCGGGAGCCTCAGAGAAGGTCCAG TGTGAAAAGAACCCGCTATTATGAAACTTACATTAGGTCCGACTCAGGAGATGAACAGCTCCCAACTATTTGCCGGGAAGACCCAGAGAT ACATGGCTATTTCAGGGACCCCCACTGCTTGGGGGAGCAGGAGTATTTCAGTAGTGAGGAATGCTACGAGGATGACAGCTCGCCCACCTG GAGCAGGCAAAACTATGGCTACTACAGCAGATACCCAGGCAGAAACATCGACTCTGAGAGGCCCCGAGGCTACCATCATCCCCAAGGATT CTTGGAGGACGATGACTCGCCCGTTTGCTATGATTCACGGAGATCTCCAAGGAGACGCCTACTACCTCCCACCCCAGCATCCCACCGGAG ATCCTCCTTCAACTTTGAGTGCCTGCGCCGGCAGAGCAGCCAGGAAGAGGTCCCGTCGTCTCCCATCTTCCCCCATCGCACGGCCCTGCC TCTGCATCTAATGCAGCAACAGATCATGGCAGTTGCCGGCCTAGATTCAAGTAAAGCCCAGAAGTACTCACCGAGTCACTCGACCCGGTC GTGGGCCACCCCTCCAGCAACCCCTCCCTACCGGGACTGGACACCGTGCTACACCCCCCTGATCCAAGTGGAGCAGTCAGAGGCCCTGGA CCAGGTGAACGGCAGCCTGCCGTCCCTGCACCGCAGCTCCTGGTACACAGACGAGCCCGACATCTCCTACCGGACTTTCACACCAGCCAG CCTGACTGTCCCCAGCAGCTTCCGGAACAAAAACAGCGACAAGCAGAGGAGTGCGGACAGCTTGGTGGAGGCAGTCCTGATATCCGAAGG CTTGGGACGCTATGCAAGGGACCCAAAATTTGTGTCAGCAACAAAACACGAAATCGCTGATGCCTGTGACCTCACCATCGACGAGATGGA GAGTGCAGCCAGCACCCTGCTTAATGGGAACGTGCGTCCCCGAGCCAACGGGGATGTGGGCCCCCTCTCACACCGGCAGGACTATGAGCT ACAGGACTTTGGTCCTGGCTACAGCGACGAAGAGCCAGACCCTGGGAGGGATGAGGAGGACCTGGCGGATGAAATGATATGCATCACCAC CTTGTAGCCCCCAGCGAGGGGCAGACTGGCTCTGGCCTCAGGTGGGGCGCAGGAGAGCCAGGGGAAAAGTGCCTCATAGTTAGGAAAGTT TAGGCACTAGTTGGGAGTAATATTCAATTAATTAGACTTTTGTATAAGAGATGTCATGCCTCAAGAAAGCCATAAACCTGGTAGGAACAG GTCCCAAGCGGTTGAGCCTGGCAGAGTACCATGCGCTCGGCCCCAGCTGCAGGAAACAGCAGGCCCCGCCCTCTCACAGAGGATGGGTGA GGAGGCCAGACCTGCCCTGCCCCATTGTCCAGATGGGCACTGCTGTGGAGTCTGCTTCTCCCATGTACCAGGGCACCAGGCCCACCCAAC TGAAGGCATGGCGGCGGGGTGCAGGGGAAAGTTAAAGGTGATGACGATCATCACACCTGTGTCGTTACCTCAGCCATCGGTCTAGCATAT CAGTCACTGGGCCCAACATATCCATTTTTAAACCCTTTCCCCCAAATACACTGCGTCCTGGTTCCTGTTTAGCTGTTCTGAAATACGGTG TGTAAGTAAGTCAGAACCCAGCTACCAGTGATTATTGCGAGGGCAATGGGACCTCATAAATAAGGTTTTCTGTGATGTGACGCCAGTTTA >36241_36241_2_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000350061_length(amino acids)=1318AA_BP=94 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGQVTHNWDEVDP DPNQMTTFGAFLHKGAFCRNYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTT LLQFMFACIGVQLFKGKFYRCTDEAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDS NGENIGPIYNHRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYVVN SSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADPTE SENVPVPTATPGNSEESNRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQMFGKVAMRDNNQI NRNNNFQTFPQAVLLLFRCATGEAWQEIMLACLPGKLCDPESDYNPGEEYTCGSNFAIVYFISFYMLCAFLIINLFVAVIMDNFDYLTRD WSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTE GNLEQANEELRAVIKKIWKKTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGKYPAKNTTIALQAGLRTLHDIGPE IRRAISCDLQDDEPEETKREEEDDVFKRNGALLGNHVNHVNSDRRDSLQQTNTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHNHHNH NSIGKQVPTSTNANLNNANMSKAAHGKRPSIGNLEHVSENGHHSSHKHDREPQRRSSVKRTRYYETYIRSDSGDEQLPTICREDPEIHGY FRDPHCLGEQEYFSSEECYEDDSSPTWSRQNYGYYSRYPGRNIDSERPRGYHHPQGFLEDDDSPVCYDSRRSPRRRLLPPTPASHRRSSF NFECLRRQSSQEEVPSSPIFPHRTALPLHLMQQQIMAVAGLDSSKAQKYSPSHSTRSWATPPATPPYRDWTPCYTPLIQVEQSEALDQVN GSLPSLHRSSWYTDEPDISYRTFTPASLTVPSSFRNKNSDKQRSADSLVEAVLISEGLGRYARDPKFVSATKHEIADACDLTIDEMESAA -------------------------------------------------------------- >36241_36241_3_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000422281_length(transcript)=4345nt_BP=742nt CTCCAGGAGACTCAGCACTGCCCTGTTCCTTCCTAGCCTGAGTCAGGACTGAGCAGAGAATCCTCCACCACACACAGCAGGCACTATCTG CCACAGTTCCTTTCCCCGATAGCTTCAAATTCTCTGCCTTTTGAAATAAGCCTACTTTTAACTGGAATAAATAATTGGTCAATCTCTACC TCAGGTGAAGAGGAACCAAGCCTCTGGAAACACTTAGGAACAAACTGTAAAAACCAAAGGCAATTGTGTAACCGGTTAAATAAGCTTGCT GGACTTTGTCCCTGTGTATGAGTTAGACAATTCTTTCAGCTAGTTTGAGTGACGCACTGACCAGTGAAGCGCAGTGAAGCAGTGGGAACC GGAATATCCAAAGAGTGGTTTGAAGGAGAAAGAAGCATTGTGGCTTTATATCCTCTGGGCCTGGGTTTCCTGAAGTCACCACACATAGAG GAGAGAGAAAATGGCTGAGTTAAAGTACATTTCTGGATTTGGGAATGAGTGTTCTTCAGAGGATCCTCGCTGCCCAGGTTCCCTGCCAGA AGGACAGAATAATCCTCAGGTCTGCCCCTACAATCTCTATGCTGAGCAGCTCTCAGGATCGGCTTTCACTTGTCCACGGAGCACCAATAA GAGAAGCTGGCTGTATAGGATTCTACCTTCAGTTTCTCACAAGCCCTTTGAATCCATTGACGAAGGCCAAGTCACTCACAACTGGGATGA AGTTGATCCTGATCCTAACCAGATGACAACTTTTGGAGCTTTCCTCCACAAAGGGGCCTTCTGCAGGAACTACTTCAATTTGCTGGATAT GCTGGTGGTTGGGGTGTCTCTGGTGTCATTTGGGATTCAATCCAGTGCCATCTCCGTTGTGAAGATTCTGAGGGTCTTAAGGGTCCTGCG TCCCCTCAGGGCCATCAACAGAGCAAAAGGACTTAAGCACGTGGTCCAGTGCGTCTTCGTGGCCATCCGGACCATCGGCAACATCATGAT CGTCACCACCCTCCTGCAGTTCATGTTTGCCTGTATCGGGGTCCAGTTGTTCAAGGGGAAGTTCTATCGCTGTACGGATGAAGCCAAAAG TAACCCTGAAGAATGCAGGGGACTTTTCATCCTCTACAAGGATGGGGATGTTGACAGTCCTGTGGTCCGTGAACGGATCTGGCAAAACAG TGATTTCAACTTCGACAACGTCCTCTCTGCTATGATGGCGCTCTTCACAGTCTCCACGTTTGAGGGCTGGCCTGCGTTGCTGTATAAAGC CATCGACTCGAATGGAGAGAACATCGGCCCAATCTACAACCACCGCGTGGAGATCTCCATCTTCTTCATCATCTACATCATCATTGTAGC TTTCTTCATGATGAACATCTTTGTGGGCTTTGTCATCGTTACATTTCAGGAACAAGGAGAAAAAGAGTATAAGAACTGTGAGCTGGACAA AAATCAGCGTCAGTGTGTTGAATACGCCTTGAAAGCACGTCCCTTGCGGAGATACATCCCCAAAAACCCCTACCAGTACAAGTTCTGGTA CGTGGTGAACTCTTCGCCTTTCGAATACATGATGTTTGTCCTCATCATGCTCAACACACTCTGCTTGGCCATGCAGCACTACGAGCAGTC CAAGATGTTCAATGATGCCATGGACATTCTGAACATGGTCTTCACCGGGGTGTTCACCGTCGAGATGGTTTTGAAAGTCATCGCATTTAA GCCTAAGGGGTATTTTAGTGACGCCTGGAACACGTTTGACTCCCTCATCGTAATCGGCAGCATTATAGACGTGGCCCTCAGCGAAGCAGA CAACTCTGAAGAGAGCAATAGAATCTCCATCACCTTTTTCCGTCTTTTCCGAGTGATGCGATTGGTGAAGCTTCTCAGCAGGGGGGAAGG CATCCGGACATTGCTGTGGACTTTTATTAAGTCCTTTCAGGCGCTCCCGTATGTGGCCCTCCTCATAGCCATGCTGTTCTTCATCTATGC GGTCATTGGCATGCAGATGTTTGGGAAAGTTGCCATGAGAGATAACAACCAGATCAATAGGAACAATAACTTCCAGACGTTTCCCCAGGC GGTGCTGCTGCTCTTCAGGTGTGCAACAGGTGAGGCCTGGCAGGAGATCATGCTGGCCTGTCTCCCAGGGAAGCTCTGTGACCCTGAGTC AGATTACAACCCCGGGGAGGAGTATACATGTGGGAGCAACTTTGCCATTGTCTATTTCATCAGTTTTTACATGCTCTGTGCATTTCTGAT CATCAATCTGTTTGTGGCTGTCATCATGGATAATTTCGACTATCTGACCCGGGACTGGTCTATTTTGGGGCCTCACCATTTAGATGAATT CAAAAGAATATGGTCAGAATATGACCCTGAGGCAAAGGGAAGGATAAAACACCTTGATGTGGTCACTCTGCTTCGACGCATCCAGCCTCC CCTGGGGTTTGGGAAGTTATGTCCACACAGGGTAGCGTGCAAGAGATTAGTTGCCATGAACATGCCTCTCAACAGTGACGGGACAGTCAT GTTTAATGCAACCCTGTTTGCTTTGGTTCGAACGGCTCTTAAGATCAAGACCGAAGGGAACCTGGAGCAAGCTAATGAAGAACTTCGGGC TGTGATAAAGAAAATTTGGAAGAAAACCAGCATGAAATTACTTGACCAAGTTGTCCCTCCAGCTGGTGATGATGAGGTAACCGTGGGGAA GTTCTATGCCACTTTCCTGATACAGGACTACTTTAGGAAATTCAAGAAACGGAAAGAACAAGGACTGGTGGGAAAGTACCCTGCGAAGAA CACCACAATTGCCCTACAGGCGGGATTAAGGACACTGCATGACATTGGGCCAGAAATCCGGCGTGCTATATCGTGTGATTTGCAAGATGA CGAGCCTGAGGAAACAAAACGAGAAGAAGAAGATGATGTGTTCAAAAGAAATGGTGCCCTGCTTGGAAACCATGTCAATCATGTTAATAG TGATAGGAGAGATTCCCTTCAGCAGACCAATACCACCCACCGTCCCCTGCATGTCCAAAGGCCTTCAATTCCACCTGCAAGTGATACTGA GAAACCGCTGTTTCCTCCAGCAGGAAATTCGGTGTGTCATAACCATCATAACCATAATTCCATAGGAAAGCAAGTTCCCACCTCAACAAA TGCCAATCTCAATAATGCCAATATGTCCAAAGCTGCCCATGGAAAGCGGCCCAGCATTGGGAACCTTGAGCATGTGTCTGAAAATGGGCA TCATTCTTCCCACAAGCATGACCGGGAGCCTCAGAGAAGGTCCAGTGTGAAAAGGTCCGACTCAGGAGATGAACAGCTCCCAACTATTTG CCGGGAAGACCCAGAGATACATGGCTATTTCAGGGACCCCCACTGCTTGGGGGAGCAGGAGTATTTCAGTAGTGAGGAATGCTACGAGGA TGACAGCTCGCCCACCTGGAGCAGGCAAAACTATGGCTACTACAGCAGATACCCAGGCAGAAACATCGACTCTGAGAGGCCCCGAGGCTA CCATCATCCCCAAGGATTCTTGGAGGACGATGACTCGCCCGTTTGCTATGATTCACGGAGATCTCCAAGGAGACGCCTACTACCTCCCAC CCCAGCATCCCACCGGAGATCCTCCTTCAACTTTGAGTGCCTGCGCCGGCAGAGCAGCCAGGAAGAGGTCCCGTCGTCTCCCATCTTCCC CCATCGCACGGCCCTGCCTCTGCATCTAATGCAGCAACAGATCATGGCAGTTGCCGGCCTAGATTCAAGTAAAGCCCAGAAGTACTCACC GAGTCACTCGACCCGGTCGTGGGCCACCCCTCCAGCAACCCCTCCCTACCGGGACTGGACACCGTGCTACACCCCCCTGATCCAAGTGGA GCAGTCAGAGGCCCTGGACCAGGTGAACGGCAGCCTGCCGTCCCTGCACCGCAGCTCCTGGTACACAGACGAGCCCGACATCTCCTACCG GACTTTCACACCAGCCAGCCTGACTGTCCCCAGCAGCTTCCGGAACAAAAACAGCGACAAGCAGAGGAGTGCGGACAGCTTGGTGGAGGC AGTCCTGATATCCGAAGGCTTGGGACGCTATGCAAGGGACCCAAAATTTGTGTCAGCAACAAAACACGAAATCGCTGATGCCTGTGACCT CACCATCGACGAGATGGAGAGTGCAGCCAGCACCCTGCTTAATGGGAACGTGCGTCCCCGAGCCAACGGGGATGTGGGCCCCCTCTCACA CCGGCAGGACTATGAGCTACAGGACTTTGGTCCTGGCTACAGCGACGAAGAGCCAGACCCTGGGAGGGATGAGGAGGACCTGGCGGATGA >36241_36241_3_HGD-CACNA1D_HGD_chr3_120389274_ENST00000283871_CACNA1D_chr3_53777038_ENST00000422281_length(amino acids)=1295AA_BP=94 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSWLYRILPSVSHKPFESIDEGQVTHNWDEVDP DPNQMTTFGAFLHKGAFCRNYFNLLDMLVVGVSLVSFGIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTT LLQFMFACIGVQLFKGKFYRCTDEAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAIDS NGENIGPIYNHRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKFWYVVN SSPFEYMMFVLIMLNTLCLAMQHYEQSKMFNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADNSE ESNRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQMFGKVAMRDNNQINRNNNFQTFPQAVLL LFRCATGEAWQEIMLACLPGKLCDPESDYNPGEEYTCGSNFAIVYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRI WSEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTEGNLEQANEELRAVIK KIWKKTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGLVGKYPAKNTTIALQAGLRTLHDIGPEIRRAISCDLQDDEPE ETKREEEDDVFKRNGALLGNHVNHVNSDRRDSLQQTNTTHRPLHVQRPSIPPASDTEKPLFPPAGNSVCHNHHNHNSIGKQVPTSTNANL NNANMSKAAHGKRPSIGNLEHVSENGHHSSHKHDREPQRRSSVKRSDSGDEQLPTICREDPEIHGYFRDPHCLGEQEYFSSEECYEDDSS PTWSRQNYGYYSRYPGRNIDSERPRGYHHPQGFLEDDDSPVCYDSRRSPRRRLLPPTPASHRRSSFNFECLRRQSSQEEVPSSPIFPHRT ALPLHLMQQQIMAVAGLDSSKAQKYSPSHSTRSWATPPATPPYRDWTPCYTPLIQVEQSEALDQVNGSLPSLHRSSWYTDEPDISYRTFT PASLTVPSSFRNKNSDKQRSADSLVEAVLISEGLGRYARDPKFVSATKHEIADACDLTIDEMESAASTLLNGNVRPRANGDVGPLSHRQD -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for HGD-CACNA1D |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for HGD-CACNA1D |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for HGD-CACNA1D |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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