|
Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:IL12RB2-SDC3 (FusionGDB2 ID:39431) |
Fusion Gene Summary for IL12RB2-SDC3 |
Fusion gene summary |
Fusion gene information | Fusion gene name: IL12RB2-SDC3 | Fusion gene ID: 39431 | Hgene | Tgene | Gene symbol | IL12RB2 | SDC3 | Gene ID | 3595 | 9672 |
Gene name | interleukin 12 receptor subunit beta 2 | syndecan 3 | |
Synonyms | - | SDCN|SYND3 | |
Cytomap | 1p31.3 | 1p35.2 | |
Type of gene | protein-coding | protein-coding | |
Description | interleukin-12 receptor subunit beta-2IL-12 receptor subunit beta-2IL-12R subunit beta-2interleukin 12 receptor, beta 2interleukin-12 receptor beta-2 chain | syndecan-3N-syndecansyndecan neural typesyndecan proteoglycan 3 | |
Modification date | 20200315 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000262345, ENST00000371000, ENST00000541374, ENST00000544434, ENST00000465396, | ENST00000471567, ENST00000336798, ENST00000339394, | |
Fusion gene scores | * DoF score | 4 X 5 X 3=60 | 9 X 8 X 6=432 |
# samples | 4 | 11 | |
** MAII score | log2(4/60*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(11/432*10)=-1.97352778863881 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: IL12RB2 [Title/Abstract] AND SDC3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | IL12RB2(67816772)-SDC3(31350012), # samples:3 | ||
Anticipated loss of major functional domain due to fusion event. | IL12RB2-SDC3 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF. IL12RB2-SDC3 seems lost the major protein functional domain in Tgene partner, which is a cell metabolism gene due to the frame-shifted ORF. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | IL12RB2 | GO:0032729 | positive regulation of interferon-gamma production | 11114383 |
Fusion gene breakpoints across IL12RB2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across SDC3 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | SKCM | TCGA-ER-A2NG-06A | IL12RB2 | chr1 | 67816772 | - | SDC3 | chr1 | 31350012 | - |
ChimerDB4 | SKCM | TCGA-ER-A2NG-06A | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
Top |
Fusion Gene ORF analysis for IL12RB2-SDC3 |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-5UTR | ENST00000262345 | ENST00000471567 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
5CDS-5UTR | ENST00000371000 | ENST00000471567 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
5CDS-5UTR | ENST00000541374 | ENST00000471567 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
5CDS-5UTR | ENST00000544434 | ENST00000471567 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
Frame-shift | ENST00000262345 | ENST00000336798 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
Frame-shift | ENST00000371000 | ENST00000336798 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
Frame-shift | ENST00000541374 | ENST00000336798 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
Frame-shift | ENST00000544434 | ENST00000336798 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
In-frame | ENST00000262345 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
In-frame | ENST00000371000 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
In-frame | ENST00000541374 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
In-frame | ENST00000544434 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
intron-3CDS | ENST00000465396 | ENST00000336798 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
intron-3CDS | ENST00000465396 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
intron-5UTR | ENST00000465396 | ENST00000471567 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000371000 | IL12RB2 | chr1 | 67816772 | + | ENST00000339394 | SDC3 | chr1 | 31350012 | - | 3047 | 1898 | 634 | 2970 | 778 |
ENST00000262345 | IL12RB2 | chr1 | 67816772 | + | ENST00000339394 | SDC3 | chr1 | 31350012 | - | 3047 | 1898 | 634 | 2970 | 778 |
ENST00000541374 | IL12RB2 | chr1 | 67816772 | + | ENST00000339394 | SDC3 | chr1 | 31350012 | - | 2626 | 1477 | 213 | 2549 | 778 |
ENST00000544434 | IL12RB2 | chr1 | 67816772 | + | ENST00000339394 | SDC3 | chr1 | 31350012 | - | 2457 | 1308 | 44 | 2380 | 778 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000371000 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - | 0.001401767 | 0.9985983 |
ENST00000262345 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - | 0.001401767 | 0.9985983 |
ENST00000541374 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - | 0.000864152 | 0.9991359 |
ENST00000544434 | ENST00000339394 | IL12RB2 | chr1 | 67816772 | + | SDC3 | chr1 | 31350012 | - | 0.001151399 | 0.99884856 |
Top |
Fusion Genomic Features for IL12RB2-SDC3 |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
Top |
Fusion Protein Features for IL12RB2-SDC3 |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:67816772/chr1:31350012) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 208_211 | 419 | 863.0 | Compositional bias | Note=Poly-Ser |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 208_211 | 419 | 660.0 | Compositional bias | Note=Poly-Ser |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 208_211 | 419 | 660.0 | Compositional bias | Note=Poly-Ser |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 208_211 | 419 | 777.0 | Compositional bias | Note=Poly-Ser |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 126_221 | 419 | 863.0 | Domain | Fibronectin type-III 1 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 226_319 | 419 | 863.0 | Domain | Fibronectin type-III 2 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 320_419 | 419 | 863.0 | Domain | Fibronectin type-III 3 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 126_221 | 419 | 660.0 | Domain | Fibronectin type-III 1 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 226_319 | 419 | 660.0 | Domain | Fibronectin type-III 2 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 320_419 | 419 | 660.0 | Domain | Fibronectin type-III 3 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 126_221 | 419 | 660.0 | Domain | Fibronectin type-III 1 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 226_319 | 419 | 660.0 | Domain | Fibronectin type-III 2 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 320_419 | 419 | 660.0 | Domain | Fibronectin type-III 3 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 126_221 | 419 | 777.0 | Domain | Fibronectin type-III 1 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 226_319 | 419 | 777.0 | Domain | Fibronectin type-III 2 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 320_419 | 419 | 777.0 | Domain | Fibronectin type-III 3 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 305_309 | 419 | 863.0 | Motif | Note=WSXWS motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 305_309 | 419 | 660.0 | Motif | Note=WSXWS motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 305_309 | 419 | 660.0 | Motif | Note=WSXWS motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 305_309 | 419 | 777.0 | Motif | Note=WSXWS motif |
Tgene | SDC3 | chr1:67816772 | chr1:31350012 | ENST00000339394 | 1 | 5 | 115_302 | 85 | 443.0 | Compositional bias | Note=Ser/Thr-rich (mucin-like) | |
Tgene | SDC3 | chr1:67816772 | chr1:31350012 | ENST00000339394 | 1 | 5 | 409_442 | 85 | 443.0 | Topological domain | Cytoplasmic | |
Tgene | SDC3 | chr1:67816772 | chr1:31350012 | ENST00000339394 | 1 | 5 | 388_408 | 85 | 443.0 | Transmembrane | Helical |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 750_753 | 419 | 863.0 | Compositional bias | Note=Poly-Pro |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 750_753 | 419 | 660.0 | Compositional bias | Note=Poly-Pro |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 750_753 | 419 | 660.0 | Compositional bias | Note=Poly-Pro |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 750_753 | 419 | 777.0 | Compositional bias | Note=Poly-Pro |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 423_520 | 419 | 863.0 | Domain | Fibronectin type-III 4 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 521_620 | 419 | 863.0 | Domain | Fibronectin type-III 5 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 423_520 | 419 | 660.0 | Domain | Fibronectin type-III 4 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 521_620 | 419 | 660.0 | Domain | Fibronectin type-III 5 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 423_520 | 419 | 660.0 | Domain | Fibronectin type-III 4 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 521_620 | 419 | 660.0 | Domain | Fibronectin type-III 5 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 423_520 | 419 | 777.0 | Domain | Fibronectin type-III 4 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 521_620 | 419 | 777.0 | Domain | Fibronectin type-III 5 |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 662_670 | 419 | 863.0 | Motif | Note=Box 1 motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 662_670 | 419 | 660.0 | Motif | Note=Box 1 motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 662_670 | 419 | 660.0 | Motif | Note=Box 1 motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 662_670 | 419 | 777.0 | Motif | Note=Box 1 motif |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 796_801 | 419 | 863.0 | Region | Note=Required for STAT4 binding |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 796_801 | 419 | 660.0 | Region | Note=Required for STAT4 binding |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 796_801 | 419 | 660.0 | Region | Note=Required for STAT4 binding |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 796_801 | 419 | 777.0 | Region | Note=Required for STAT4 binding |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 24_622 | 419 | 863.0 | Topological domain | Extracellular |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 644_862 | 419 | 863.0 | Topological domain | Cytoplasmic |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 24_622 | 419 | 660.0 | Topological domain | Extracellular |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 644_862 | 419 | 660.0 | Topological domain | Cytoplasmic |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 24_622 | 419 | 660.0 | Topological domain | Extracellular |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 644_862 | 419 | 660.0 | Topological domain | Cytoplasmic |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 24_622 | 419 | 777.0 | Topological domain | Extracellular |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 644_862 | 419 | 777.0 | Topological domain | Cytoplasmic |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000262345 | + | 9 | 16 | 623_643 | 419 | 863.0 | Transmembrane | Helical |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000371000 | + | 9 | 15 | 623_643 | 419 | 660.0 | Transmembrane | Helical |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000541374 | + | 10 | 16 | 623_643 | 419 | 660.0 | Transmembrane | Helical |
Hgene | IL12RB2 | chr1:67816772 | chr1:31350012 | ENST00000544434 | + | 9 | 14 | 623_643 | 419 | 777.0 | Transmembrane | Helical |
Tgene | SDC3 | chr1:67816772 | chr1:31350012 | ENST00000339394 | 1 | 5 | 1_387 | 85 | 443.0 | Topological domain | Extracellular |
Top |
Fusion Gene Sequence for IL12RB2-SDC3 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>39431_39431_1_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000262345_SDC3_chr1_31350012_ENST00000339394_length(transcript)=3047nt_BP=1898nt TGCAGAGCACAGAGAAAGGACATCTGCGAGGAAAGTTCCCTGATGGCTGTCAACAAAGTGCCACGTCTCTATGGCTGTGAACGCTGAGCA CACGATTTTATCGCGCCTATCATATCTTGGTGCATAAACGCACCTCACCTCGGTCAACCCTTGCTCCGTCTTATGAGACAGGCTTTATTA TCCGCATTTTATATGAGGGGAAACTGACGGTGGAGAGAGAATTATCTTGCTCAAGGCGACACAGCAGAGCCCACAGGTGGCAGAATCCCA CCCGAGCCCGCTTCGACCCGCGGGGTGGAAACCACGGGCGCCCGCCCGGCTGCGCTTCCAGAGCTGAACTGAGAAGCGAGTCCTCTCCGC CCTGCGGCCACCGCCCAGCCCCGACCCCCGCCCCGGCCCGATCCTCACTCGCCGCCAGCTCCCCGCGCCCACCCCGGAGTTGGTGGCGCA GAGGCGGGAGGCGGAGGCGGGAGGGCGGGCGCTGGCACCGGGAACGCCCGAGCGCCGGCAGAGAGCGCGGAGAGCGCGACACGTGCGGCC CAGAGCACCGGGGCCACCCGGTCCCCGCAGGCCCGGGACCGCGCCCGCTGGCAGGCGACACGTGGAAGAATACGGAGTTCTATACCAGAG TTGATTGTTGATGGCACATACTTTTAGAGGATGCTCATTGGCATTTATGTTTATAATCACGTGGCTGTTGATTAAAGCAAAAATAGATGC GTGCAAGAGAGGCGATGTGACTGTGAAGCCTTCCCATGTAATTTTACTTGGATCCACTGTCAATATTACATGCTCTTTGAAGCCCAGACA AGGCTGCTTTCACTATTCCAGACGTAACAAGTTAATCCTGTACAAGTTTGACAGAAGAATCAATTTTCACCATGGCCACTCCCTCAATTC TCAAGTCACAGGTCTTCCCCTTGGTACAACCTTGTTTGTCTGCAAACTGGCCTGTATCAATAGTGATGAAATTCAAATATGTGGAGCAGA GATCTTCGTTGGTGTTGCTCCAGAACAGCCTCAAAATTTATCCTGCATACAGAAGGGAGAACAGGGGACTGTGGCCTGCACCTGGGAAAG AGGACGAGACACCCACTTATACACTGAGTATACTCTACAGCTAAGTGGACCAAAAAATTTAACCTGGCAGAAGCAATGTAAAGACATTTA TTGTGACTATTTGGACTTTGGAATCAACCTCACCCCTGAATCACCTGAATCCAATTTCACAGCCAAGGTTACTGCTGTCAATAGTCTTGG AAGCTCCTCTTCACTTCCATCCACATTCACATTCTTGGACATAGTGAGGCCTCTTCCTCCGTGGGACATTAGAATCAAATTTCAAAAGGC TTCTGTGAGCAGATGTACCCTTTATTGGAGAGATGAGGGACTGGTACTGCTTAATCGACTCAGATATCGGCCCAGTAACAGCAGGCTCTG GAATATGGTTAATGTTACAAAGGCCAAAGGAAGACATGATTTGCTGGATCTGAAACCATTTACAGAATATGAATTTCAGATTTCCTCTAA GCTACATCTTTATAAGGGAAGTTGGAGTGATTGGAGTGAATCATTGAGAGCACAAACACCAGAAGAAGAGCCTACTGGGATGTTAGATGT CTGGTACATGAAACGGCACATTGACTACAGTAGACAACAGATTTCTCTTTTCTGGAAGAATCTGAGTGTCTCAGAGGCAAGAGGAAAAAT TCTCCACTATCAGGTGACCTTGCAGGAGCTGACAGGAGGGAAAGCCATGACACAGAACATCACAGGACACACCTCCTGGACCACAGTCAT TCCTAGAACCGGAAATTGGGCTGTGGCTGTGTCTGCAGCAAATTCAAAAGGCAGTTCTCTGCCCACTCGTATTAACATAATGAACCTGTG TGAGGCAGACTTCGAGCAGGAGTCGGGCATTGAGACAGCCATGCGCTTCAGCCCAGATGTAGCCCTGGCGGTGTCCACCACACCTGCGGT GCTGCCCACCACGAACATCCAGCCTGTGGGCACACCATTTGAAGAGCTCCCCTCTGAGCGCCCCACCCTGGAGCCAGCCACCAGCCCCCT GGTGGTGACAGAAGTCCCGGAAGAGCCCAGCCAGAGAGCCACCACCGTCTCCACTACCATGGCTACCACTGCTGCCACAAGCACAGGGGA CCCGACTGTGGCCACAGTGCCTGCCACAGTGGCCACCGCCACCCCCAGCACCCCTGCAGCACCCCCTTTTACGGCCACCACTGCTGTTAT AAGGACCACTGGCGTACGGAGGCTTCTGCCTCTCCCACTGACCACAGTGGCTACGGCACGGGCCACTACCCCCGAGGCGCCCTCCCCGCC CACCACGGCGGCTGTCTTGGACACCGAGGCCCCAACACCCAGGCTGGTCAGCACAGCTACCTCCCGGCCAAGAGCCCTTCCCAGGCCGGC CACCACCCAGGAGCCTGACATCCCTGAGAGGAGCACCCTGCCCCTGGGGACCACTGCCCCTGGACCCACAGAGGTGGCTCAGACCCCAAC TCCAGAGACCTTCCTGACCACAATCCGGGATGAGCCAGAGGTTCCGGTGAGTGGGGGGCCCAGTGGAGACTTCGAGCTGCCAGAAGAAGA GACCACACAACCAGACACAGCCAATGAGGTGGTAGCTGTGGGAGGGGCTGCGGCCAAGGCATCATCTCCACCTGGGACACTGCCCAAGGG TGCCCGCCCGGGCCCTGGCCTCCTGGACAATGCCATCGACTCGGGCAGCTCAGCTGCTCAGCTGCCTCAGAAGAGTATCCTGGAGCGGAA GGAGGTGCTCGTAGCTGTGATTGTGGGCGGGGTGGTGGGCGCCCTCTTTGCTGCCTTCTTGGTCACACTGCTCATCTATCGTATGAAGAA AAAGGATGAGGGCAGCTACACGCTGGAGGAACCCAAGCAGGCGAGCGTCACATACCAGAAGCCTGACAAGCAGGAGGAGTTCTATGCCTA >39431_39431_1_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000262345_SDC3_chr1_31350012_ENST00000339394_length(amino acids)=778AA_BP=421 MLMAHTFRGCSLAFMFIITWLLIKAKIDACKRGDVTVKPSHVILLGSTVNITCSLKPRQGCFHYSRRNKLILYKFDRRINFHHGHSLNSQ VTGLPLGTTLFVCKLACINSDEIQICGAEIFVGVAPEQPQNLSCIQKGEQGTVACTWERGRDTHLYTEYTLQLSGPKNLTWQKQCKDIYC DYLDFGINLTPESPESNFTAKVTAVNSLGSSSSLPSTFTFLDIVRPLPPWDIRIKFQKASVSRCTLYWRDEGLVLLNRLRYRPSNSRLWN MVNVTKAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRAQTPEEEPTGMLDVWYMKRHIDYSRQQISLFWKNLSVSEARGKIL HYQVTLQELTGGKAMTQNITGHTSWTTVIPRTGNWAVAVSAANSKGSSLPTRINIMNLCEADFEQESGIETAMRFSPDVALAVSTTPAVL PTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIR TTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTP ETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKE -------------------------------------------------------------- >39431_39431_2_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000371000_SDC3_chr1_31350012_ENST00000339394_length(transcript)=3047nt_BP=1898nt TGCAGAGCACAGAGAAAGGACATCTGCGAGGAAAGTTCCCTGATGGCTGTCAACAAAGTGCCACGTCTCTATGGCTGTGAACGCTGAGCA CACGATTTTATCGCGCCTATCATATCTTGGTGCATAAACGCACCTCACCTCGGTCAACCCTTGCTCCGTCTTATGAGACAGGCTTTATTA TCCGCATTTTATATGAGGGGAAACTGACGGTGGAGAGAGAATTATCTTGCTCAAGGCGACACAGCAGAGCCCACAGGTGGCAGAATCCCA CCCGAGCCCGCTTCGACCCGCGGGGTGGAAACCACGGGCGCCCGCCCGGCTGCGCTTCCAGAGCTGAACTGAGAAGCGAGTCCTCTCCGC CCTGCGGCCACCGCCCAGCCCCGACCCCCGCCCCGGCCCGATCCTCACTCGCCGCCAGCTCCCCGCGCCCACCCCGGAGTTGGTGGCGCA GAGGCGGGAGGCGGAGGCGGGAGGGCGGGCGCTGGCACCGGGAACGCCCGAGCGCCGGCAGAGAGCGCGGAGAGCGCGACACGTGCGGCC CAGAGCACCGGGGCCACCCGGTCCCCGCAGGCCCGGGACCGCGCCCGCTGGCAGGCGACACGTGGAAGAATACGGAGTTCTATACCAGAG TTGATTGTTGATGGCACATACTTTTAGAGGATGCTCATTGGCATTTATGTTTATAATCACGTGGCTGTTGATTAAAGCAAAAATAGATGC GTGCAAGAGAGGCGATGTGACTGTGAAGCCTTCCCATGTAATTTTACTTGGATCCACTGTCAATATTACATGCTCTTTGAAGCCCAGACA AGGCTGCTTTCACTATTCCAGACGTAACAAGTTAATCCTGTACAAGTTTGACAGAAGAATCAATTTTCACCATGGCCACTCCCTCAATTC TCAAGTCACAGGTCTTCCCCTTGGTACAACCTTGTTTGTCTGCAAACTGGCCTGTATCAATAGTGATGAAATTCAAATATGTGGAGCAGA GATCTTCGTTGGTGTTGCTCCAGAACAGCCTCAAAATTTATCCTGCATACAGAAGGGAGAACAGGGGACTGTGGCCTGCACCTGGGAAAG AGGACGAGACACCCACTTATACACTGAGTATACTCTACAGCTAAGTGGACCAAAAAATTTAACCTGGCAGAAGCAATGTAAAGACATTTA TTGTGACTATTTGGACTTTGGAATCAACCTCACCCCTGAATCACCTGAATCCAATTTCACAGCCAAGGTTACTGCTGTCAATAGTCTTGG AAGCTCCTCTTCACTTCCATCCACATTCACATTCTTGGACATAGTGAGGCCTCTTCCTCCGTGGGACATTAGAATCAAATTTCAAAAGGC TTCTGTGAGCAGATGTACCCTTTATTGGAGAGATGAGGGACTGGTACTGCTTAATCGACTCAGATATCGGCCCAGTAACAGCAGGCTCTG GAATATGGTTAATGTTACAAAGGCCAAAGGAAGACATGATTTGCTGGATCTGAAACCATTTACAGAATATGAATTTCAGATTTCCTCTAA GCTACATCTTTATAAGGGAAGTTGGAGTGATTGGAGTGAATCATTGAGAGCACAAACACCAGAAGAAGAGCCTACTGGGATGTTAGATGT CTGGTACATGAAACGGCACATTGACTACAGTAGACAACAGATTTCTCTTTTCTGGAAGAATCTGAGTGTCTCAGAGGCAAGAGGAAAAAT TCTCCACTATCAGGTGACCTTGCAGGAGCTGACAGGAGGGAAAGCCATGACACAGAACATCACAGGACACACCTCCTGGACCACAGTCAT TCCTAGAACCGGAAATTGGGCTGTGGCTGTGTCTGCAGCAAATTCAAAAGGCAGTTCTCTGCCCACTCGTATTAACATAATGAACCTGTG TGAGGCAGACTTCGAGCAGGAGTCGGGCATTGAGACAGCCATGCGCTTCAGCCCAGATGTAGCCCTGGCGGTGTCCACCACACCTGCGGT GCTGCCCACCACGAACATCCAGCCTGTGGGCACACCATTTGAAGAGCTCCCCTCTGAGCGCCCCACCCTGGAGCCAGCCACCAGCCCCCT GGTGGTGACAGAAGTCCCGGAAGAGCCCAGCCAGAGAGCCACCACCGTCTCCACTACCATGGCTACCACTGCTGCCACAAGCACAGGGGA CCCGACTGTGGCCACAGTGCCTGCCACAGTGGCCACCGCCACCCCCAGCACCCCTGCAGCACCCCCTTTTACGGCCACCACTGCTGTTAT AAGGACCACTGGCGTACGGAGGCTTCTGCCTCTCCCACTGACCACAGTGGCTACGGCACGGGCCACTACCCCCGAGGCGCCCTCCCCGCC CACCACGGCGGCTGTCTTGGACACCGAGGCCCCAACACCCAGGCTGGTCAGCACAGCTACCTCCCGGCCAAGAGCCCTTCCCAGGCCGGC CACCACCCAGGAGCCTGACATCCCTGAGAGGAGCACCCTGCCCCTGGGGACCACTGCCCCTGGACCCACAGAGGTGGCTCAGACCCCAAC TCCAGAGACCTTCCTGACCACAATCCGGGATGAGCCAGAGGTTCCGGTGAGTGGGGGGCCCAGTGGAGACTTCGAGCTGCCAGAAGAAGA GACCACACAACCAGACACAGCCAATGAGGTGGTAGCTGTGGGAGGGGCTGCGGCCAAGGCATCATCTCCACCTGGGACACTGCCCAAGGG TGCCCGCCCGGGCCCTGGCCTCCTGGACAATGCCATCGACTCGGGCAGCTCAGCTGCTCAGCTGCCTCAGAAGAGTATCCTGGAGCGGAA GGAGGTGCTCGTAGCTGTGATTGTGGGCGGGGTGGTGGGCGCCCTCTTTGCTGCCTTCTTGGTCACACTGCTCATCTATCGTATGAAGAA AAAGGATGAGGGCAGCTACACGCTGGAGGAACCCAAGCAGGCGAGCGTCACATACCAGAAGCCTGACAAGCAGGAGGAGTTCTATGCCTA >39431_39431_2_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000371000_SDC3_chr1_31350012_ENST00000339394_length(amino acids)=778AA_BP=421 MLMAHTFRGCSLAFMFIITWLLIKAKIDACKRGDVTVKPSHVILLGSTVNITCSLKPRQGCFHYSRRNKLILYKFDRRINFHHGHSLNSQ VTGLPLGTTLFVCKLACINSDEIQICGAEIFVGVAPEQPQNLSCIQKGEQGTVACTWERGRDTHLYTEYTLQLSGPKNLTWQKQCKDIYC DYLDFGINLTPESPESNFTAKVTAVNSLGSSSSLPSTFTFLDIVRPLPPWDIRIKFQKASVSRCTLYWRDEGLVLLNRLRYRPSNSRLWN MVNVTKAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRAQTPEEEPTGMLDVWYMKRHIDYSRQQISLFWKNLSVSEARGKIL HYQVTLQELTGGKAMTQNITGHTSWTTVIPRTGNWAVAVSAANSKGSSLPTRINIMNLCEADFEQESGIETAMRFSPDVALAVSTTPAVL PTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIR TTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTP ETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKE -------------------------------------------------------------- >39431_39431_3_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000541374_SDC3_chr1_31350012_ENST00000339394_length(transcript)=2626nt_BP=1477nt AGAGAGCGCGGAGAGCGCGACACGTGCGGCCCAGAGCACCGGGGCCACCCGGTCCCCGCAGGCCCGGGACCGCGCCCGCTGGCAGGCGAC ACGTGGTCACGGTGATCCATTTGTAAAGTCGGGAATAAATGACCTCTGAAGTGTTGTCTGTATATTGATCTGCTACCAGTAAAACATATC TCTGAAGAATACGGAGTTCTATACCAGAGTTGATTGTTGATGGCACATACTTTTAGAGGATGCTCATTGGCATTTATGTTTATAATCACG TGGCTGTTGATTAAAGCAAAAATAGATGCGTGCAAGAGAGGCGATGTGACTGTGAAGCCTTCCCATGTAATTTTACTTGGATCCACTGTC AATATTACATGCTCTTTGAAGCCCAGACAAGGCTGCTTTCACTATTCCAGACGTAACAAGTTAATCCTGTACAAGTTTGACAGAAGAATC AATTTTCACCATGGCCACTCCCTCAATTCTCAAGTCACAGGTCTTCCCCTTGGTACAACCTTGTTTGTCTGCAAACTGGCCTGTATCAAT AGTGATGAAATTCAAATATGTGGAGCAGAGATCTTCGTTGGTGTTGCTCCAGAACAGCCTCAAAATTTATCCTGCATACAGAAGGGAGAA CAGGGGACTGTGGCCTGCACCTGGGAAAGAGGACGAGACACCCACTTATACACTGAGTATACTCTACAGCTAAGTGGACCAAAAAATTTA ACCTGGCAGAAGCAATGTAAAGACATTTATTGTGACTATTTGGACTTTGGAATCAACCTCACCCCTGAATCACCTGAATCCAATTTCACA GCCAAGGTTACTGCTGTCAATAGTCTTGGAAGCTCCTCTTCACTTCCATCCACATTCACATTCTTGGACATAGTGAGGCCTCTTCCTCCG TGGGACATTAGAATCAAATTTCAAAAGGCTTCTGTGAGCAGATGTACCCTTTATTGGAGAGATGAGGGACTGGTACTGCTTAATCGACTC AGATATCGGCCCAGTAACAGCAGGCTCTGGAATATGGTTAATGTTACAAAGGCCAAAGGAAGACATGATTTGCTGGATCTGAAACCATTT ACAGAATATGAATTTCAGATTTCCTCTAAGCTACATCTTTATAAGGGAAGTTGGAGTGATTGGAGTGAATCATTGAGAGCACAAACACCA GAAGAAGAGCCTACTGGGATGTTAGATGTCTGGTACATGAAACGGCACATTGACTACAGTAGACAACAGATTTCTCTTTTCTGGAAGAAT CTGAGTGTCTCAGAGGCAAGAGGAAAAATTCTCCACTATCAGGTGACCTTGCAGGAGCTGACAGGAGGGAAAGCCATGACACAGAACATC ACAGGACACACCTCCTGGACCACAGTCATTCCTAGAACCGGAAATTGGGCTGTGGCTGTGTCTGCAGCAAATTCAAAAGGCAGTTCTCTG CCCACTCGTATTAACATAATGAACCTGTGTGAGGCAGACTTCGAGCAGGAGTCGGGCATTGAGACAGCCATGCGCTTCAGCCCAGATGTA GCCCTGGCGGTGTCCACCACACCTGCGGTGCTGCCCACCACGAACATCCAGCCTGTGGGCACACCATTTGAAGAGCTCCCCTCTGAGCGC CCCACCCTGGAGCCAGCCACCAGCCCCCTGGTGGTGACAGAAGTCCCGGAAGAGCCCAGCCAGAGAGCCACCACCGTCTCCACTACCATG GCTACCACTGCTGCCACAAGCACAGGGGACCCGACTGTGGCCACAGTGCCTGCCACAGTGGCCACCGCCACCCCCAGCACCCCTGCAGCA CCCCCTTTTACGGCCACCACTGCTGTTATAAGGACCACTGGCGTACGGAGGCTTCTGCCTCTCCCACTGACCACAGTGGCTACGGCACGG GCCACTACCCCCGAGGCGCCCTCCCCGCCCACCACGGCGGCTGTCTTGGACACCGAGGCCCCAACACCCAGGCTGGTCAGCACAGCTACC TCCCGGCCAAGAGCCCTTCCCAGGCCGGCCACCACCCAGGAGCCTGACATCCCTGAGAGGAGCACCCTGCCCCTGGGGACCACTGCCCCT GGACCCACAGAGGTGGCTCAGACCCCAACTCCAGAGACCTTCCTGACCACAATCCGGGATGAGCCAGAGGTTCCGGTGAGTGGGGGGCCC AGTGGAGACTTCGAGCTGCCAGAAGAAGAGACCACACAACCAGACACAGCCAATGAGGTGGTAGCTGTGGGAGGGGCTGCGGCCAAGGCA TCATCTCCACCTGGGACACTGCCCAAGGGTGCCCGCCCGGGCCCTGGCCTCCTGGACAATGCCATCGACTCGGGCAGCTCAGCTGCTCAG CTGCCTCAGAAGAGTATCCTGGAGCGGAAGGAGGTGCTCGTAGCTGTGATTGTGGGCGGGGTGGTGGGCGCCCTCTTTGCTGCCTTCTTG GTCACACTGCTCATCTATCGTATGAAGAAAAAGGATGAGGGCAGCTACACGCTGGAGGAACCCAAGCAGGCGAGCGTCACATACCAGAAG CCTGACAAGCAGGAGGAGTTCTATGCCTAGTGGAGCCACAGTGCCTCCCTGCAGCCTCAACACCACCCTGCTGTCCAGTCCCCAGCCTGG >39431_39431_3_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000541374_SDC3_chr1_31350012_ENST00000339394_length(amino acids)=778AA_BP=421 MLMAHTFRGCSLAFMFIITWLLIKAKIDACKRGDVTVKPSHVILLGSTVNITCSLKPRQGCFHYSRRNKLILYKFDRRINFHHGHSLNSQ VTGLPLGTTLFVCKLACINSDEIQICGAEIFVGVAPEQPQNLSCIQKGEQGTVACTWERGRDTHLYTEYTLQLSGPKNLTWQKQCKDIYC DYLDFGINLTPESPESNFTAKVTAVNSLGSSSSLPSTFTFLDIVRPLPPWDIRIKFQKASVSRCTLYWRDEGLVLLNRLRYRPSNSRLWN MVNVTKAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRAQTPEEEPTGMLDVWYMKRHIDYSRQQISLFWKNLSVSEARGKIL HYQVTLQELTGGKAMTQNITGHTSWTTVIPRTGNWAVAVSAANSKGSSLPTRINIMNLCEADFEQESGIETAMRFSPDVALAVSTTPAVL PTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIR TTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTP ETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKE -------------------------------------------------------------- >39431_39431_4_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000544434_SDC3_chr1_31350012_ENST00000339394_length(transcript)=2457nt_BP=1308nt GCAGGCGACACGTGGAAGAATACGGAGTTCTATACCAGAGTTGATTGTTGATGGCACATACTTTTAGAGGATGCTCATTGGCATTTATGT TTATAATCACGTGGCTGTTGATTAAAGCAAAAATAGATGCGTGCAAGAGAGGCGATGTGACTGTGAAGCCTTCCCATGTAATTTTACTTG GATCCACTGTCAATATTACATGCTCTTTGAAGCCCAGACAAGGCTGCTTTCACTATTCCAGACGTAACAAGTTAATCCTGTACAAGTTTG ACAGAAGAATCAATTTTCACCATGGCCACTCCCTCAATTCTCAAGTCACAGGTCTTCCCCTTGGTACAACCTTGTTTGTCTGCAAACTGG CCTGTATCAATAGTGATGAAATTCAAATATGTGGAGCAGAGATCTTCGTTGGTGTTGCTCCAGAACAGCCTCAAAATTTATCCTGCATAC AGAAGGGAGAACAGGGGACTGTGGCCTGCACCTGGGAAAGAGGACGAGACACCCACTTATACACTGAGTATACTCTACAGCTAAGTGGAC CAAAAAATTTAACCTGGCAGAAGCAATGTAAAGACATTTATTGTGACTATTTGGACTTTGGAATCAACCTCACCCCTGAATCACCTGAAT CCAATTTCACAGCCAAGGTTACTGCTGTCAATAGTCTTGGAAGCTCCTCTTCACTTCCATCCACATTCACATTCTTGGACATAGTGAGGC CTCTTCCTCCGTGGGACATTAGAATCAAATTTCAAAAGGCTTCTGTGAGCAGATGTACCCTTTATTGGAGAGATGAGGGACTGGTACTGC TTAATCGACTCAGATATCGGCCCAGTAACAGCAGGCTCTGGAATATGGTTAATGTTACAAAGGCCAAAGGAAGACATGATTTGCTGGATC TGAAACCATTTACAGAATATGAATTTCAGATTTCCTCTAAGCTACATCTTTATAAGGGAAGTTGGAGTGATTGGAGTGAATCATTGAGAG CACAAACACCAGAAGAAGAGCCTACTGGGATGTTAGATGTCTGGTACATGAAACGGCACATTGACTACAGTAGACAACAGATTTCTCTTT TCTGGAAGAATCTGAGTGTCTCAGAGGCAAGAGGAAAAATTCTCCACTATCAGGTGACCTTGCAGGAGCTGACAGGAGGGAAAGCCATGA CACAGAACATCACAGGACACACCTCCTGGACCACAGTCATTCCTAGAACCGGAAATTGGGCTGTGGCTGTGTCTGCAGCAAATTCAAAAG GCAGTTCTCTGCCCACTCGTATTAACATAATGAACCTGTGTGAGGCAGACTTCGAGCAGGAGTCGGGCATTGAGACAGCCATGCGCTTCA GCCCAGATGTAGCCCTGGCGGTGTCCACCACACCTGCGGTGCTGCCCACCACGAACATCCAGCCTGTGGGCACACCATTTGAAGAGCTCC CCTCTGAGCGCCCCACCCTGGAGCCAGCCACCAGCCCCCTGGTGGTGACAGAAGTCCCGGAAGAGCCCAGCCAGAGAGCCACCACCGTCT CCACTACCATGGCTACCACTGCTGCCACAAGCACAGGGGACCCGACTGTGGCCACAGTGCCTGCCACAGTGGCCACCGCCACCCCCAGCA CCCCTGCAGCACCCCCTTTTACGGCCACCACTGCTGTTATAAGGACCACTGGCGTACGGAGGCTTCTGCCTCTCCCACTGACCACAGTGG CTACGGCACGGGCCACTACCCCCGAGGCGCCCTCCCCGCCCACCACGGCGGCTGTCTTGGACACCGAGGCCCCAACACCCAGGCTGGTCA GCACAGCTACCTCCCGGCCAAGAGCCCTTCCCAGGCCGGCCACCACCCAGGAGCCTGACATCCCTGAGAGGAGCACCCTGCCCCTGGGGA CCACTGCCCCTGGACCCACAGAGGTGGCTCAGACCCCAACTCCAGAGACCTTCCTGACCACAATCCGGGATGAGCCAGAGGTTCCGGTGA GTGGGGGGCCCAGTGGAGACTTCGAGCTGCCAGAAGAAGAGACCACACAACCAGACACAGCCAATGAGGTGGTAGCTGTGGGAGGGGCTG CGGCCAAGGCATCATCTCCACCTGGGACACTGCCCAAGGGTGCCCGCCCGGGCCCTGGCCTCCTGGACAATGCCATCGACTCGGGCAGCT CAGCTGCTCAGCTGCCTCAGAAGAGTATCCTGGAGCGGAAGGAGGTGCTCGTAGCTGTGATTGTGGGCGGGGTGGTGGGCGCCCTCTTTG CTGCCTTCTTGGTCACACTGCTCATCTATCGTATGAAGAAAAAGGATGAGGGCAGCTACACGCTGGAGGAACCCAAGCAGGCGAGCGTCA CATACCAGAAGCCTGACAAGCAGGAGGAGTTCTATGCCTAGTGGAGCCACAGTGCCTCCCTGCAGCCTCAACACCACCCTGCTGTCCAGT >39431_39431_4_IL12RB2-SDC3_IL12RB2_chr1_67816772_ENST00000544434_SDC3_chr1_31350012_ENST00000339394_length(amino acids)=778AA_BP=421 MLMAHTFRGCSLAFMFIITWLLIKAKIDACKRGDVTVKPSHVILLGSTVNITCSLKPRQGCFHYSRRNKLILYKFDRRINFHHGHSLNSQ VTGLPLGTTLFVCKLACINSDEIQICGAEIFVGVAPEQPQNLSCIQKGEQGTVACTWERGRDTHLYTEYTLQLSGPKNLTWQKQCKDIYC DYLDFGINLTPESPESNFTAKVTAVNSLGSSSSLPSTFTFLDIVRPLPPWDIRIKFQKASVSRCTLYWRDEGLVLLNRLRYRPSNSRLWN MVNVTKAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDWSESLRAQTPEEEPTGMLDVWYMKRHIDYSRQQISLFWKNLSVSEARGKIL HYQVTLQELTGGKAMTQNITGHTSWTTVIPRTGNWAVAVSAANSKGSSLPTRINIMNLCEADFEQESGIETAMRFSPDVALAVSTTPAVL PTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIR TTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTP ETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKE -------------------------------------------------------------- |
Top |
Fusion Gene PPI Analysis for IL12RB2-SDC3 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
Related Drugs for IL12RB2-SDC3 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
Related Diseases for IL12RB2-SDC3 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |