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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ITGB1-RIMS2 (FusionGDB2 ID:40513)

Fusion Gene Summary for ITGB1-RIMS2

check button Fusion gene summary
Fusion gene informationFusion gene name: ITGB1-RIMS2
Fusion gene ID: 40513
HgeneTgene
Gene symbol

ITGB1

RIMS2

Gene ID

3688

9699

Gene nameintegrin subunit beta 1regulating synaptic membrane exocytosis 2
SynonymsCD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLABOBOE|RAB3IP3|RIM2
Cytomap

10p11.22

8q22.3

Type of geneprotein-codingprotein-coding
Descriptionintegrin beta-1glycoprotein IIaintegrin VLA-4 beta subunitintegrin beta 1integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)very late activation protein, beta polypeptideregulating synaptic membrane exocytosis protein 2RAB3 interacting protein 3Rab3-interacting proteinnon-small cell lung cancer RimL3a proteinnon-small cell lung cancer RimL3c proteinnuclear proteinrab-3-interacting molecule 2rab-3-interacting protei
Modification date2020031320200313
UniProtAcc

P05556

.
Ensembl transtripts involved in fusion geneENST00000302278, ENST00000374956, 
ENST00000396033, ENST00000423113, 
ENST00000484088, 		ENST00000339750, 
ENST00000436393, ENST00000522174, 
ENST00000262231, ENST00000406091, 
ENST00000507740, 
Fusion gene scores* DoF score10 X 7 X 8=56013 X 10 X 6=780
# samples 1112
** MAII scorelog2(11/560*10)=-2.34792330342031
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(12/780*10)=-2.70043971814109
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ITGB1 [Title/Abstract] AND RIMS2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointITGB1(33197296)-RIMS2(104955001), # samples:1
Anticipated loss of major functional domain due to fusion event.ITGB1-RIMS2 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
ITGB1-RIMS2 seems lost the major protein functional domain in Hgene partner, which is a tumor suppressor due to the frame-shifted ORF.
ITGB1-RIMS2 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneITGB1

GO:0007155

cell adhesion

19703720

HgeneITGB1

GO:0007159

leukocyte cell-cell adhesion

1715889

HgeneITGB1

GO:0007229

integrin-mediated signaling pathway

31331973

HgeneITGB1

GO:0010710

regulation of collagen catabolic process

10455171

HgeneITGB1

GO:0010763

positive regulation of fibroblast migration

26763945

HgeneITGB1

GO:0023035

CD40 signaling pathway

31331973

HgeneITGB1

GO:0033627

cell adhesion mediated by integrin

12807887|17158881

HgeneITGB1

GO:0051897

positive regulation of protein kinase B signaling

24044949

HgeneITGB1

GO:0090303

positive regulation of wound healing

26763945

HgeneITGB1

GO:1903078

positive regulation of protein localization to plasma membrane

10455171

HgeneITGB1

GO:2000273

positive regulation of signaling receptor activity

24044949

TgeneRIMS2

GO:1903861

positive regulation of dendrite extension

23999003


check buttonFusion gene breakpoints across ITGB1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across RIMS2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LGGTCGA-TQ-A7RVITGB1chr10

33197296

-RIMS2chr8

104955001

+


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Fusion Gene ORF analysis for ITGB1-RIMS2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000302278ENST00000339750ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000302278ENST00000436393ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000302278ENST00000522174ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000374956ENST00000339750ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000374956ENST00000436393ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000374956ENST00000522174ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000396033ENST00000339750ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000396033ENST00000436393ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000396033ENST00000522174ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000423113ENST00000339750ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000423113ENST00000436393ITGB1chr10

33197296

-RIMS2chr8

104955001

+
5CDS-intronENST00000423113ENST00000522174ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000302278ENST00000262231ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000302278ENST00000406091ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000302278ENST00000507740ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000374956ENST00000262231ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000374956ENST00000406091ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000374956ENST00000507740ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000423113ENST00000262231ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000423113ENST00000406091ITGB1chr10

33197296

-RIMS2chr8

104955001

+
Frame-shiftENST00000423113ENST00000507740ITGB1chr10

33197296

-RIMS2chr8

104955001

+
In-frameENST00000396033ENST00000262231ITGB1chr10

33197296

-RIMS2chr8

104955001

+
In-frameENST00000396033ENST00000406091ITGB1chr10

33197296

-RIMS2chr8

104955001

+
In-frameENST00000396033ENST00000507740ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-3CDSENST00000484088ENST00000262231ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-3CDSENST00000484088ENST00000406091ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-3CDSENST00000484088ENST00000507740ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-intronENST00000484088ENST00000339750ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-intronENST00000484088ENST00000436393ITGB1chr10

33197296

-RIMS2chr8

104955001

+
intron-intronENST00000484088ENST00000522174ITGB1chr10

33197296

-RIMS2chr8

104955001

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000396033ITGB1chr1033197296-ENST00000406091RIMS2chr8104955001+397024674039691310
ENST00000396033ITGB1chr1033197296-ENST00000262231RIMS2chr8104955001+400924674039691309
ENST00000396033ITGB1chr1033197296-ENST00000507740RIMS2chr8104955001+831024674040351331

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000396033ENST00000406091ITGB1chr1033197296-RIMS2chr8104955001+0.0001733790.9998266
ENST00000396033ENST00000262231ITGB1chr1033197296-RIMS2chr8104955001+0.0001726650.9998273
ENST00000396033ENST00000507740ITGB1chr1033197296-RIMS2chr8104955001+9.73E-050.9999027

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Fusion Genomic Features for ITGB1-RIMS2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
ITGB1chr1033197295-RIMS2chr8104955000+0.0004714030.99952865
ITGB1chr1033197295-RIMS2chr8104955000+0.0004714030.99952865

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for ITGB1-RIMS2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr10:33197296/chr8:104955001)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ITGB1

P05556

.
FUNCTION: Integrins alpha-1/beta-1, alpha-2/beta-1, alpha-10/beta-1 and alpha-11/beta-1 are receptors for collagen. Integrins alpha-1/beta-1 and alpha-2/beta-2 recognize the proline-hydroxylated sequence G-F-P-G-E-R in collagen. Integrins alpha-2/beta-1, alpha-3/beta-1, alpha-4/beta-1, alpha-5/beta-1, alpha-8/beta-1, alpha-10/beta-1, alpha-11/beta-1 and alpha-V/beta-1 are receptors for fibronectin. Alpha-4/beta-1 recognizes one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. Integrin alpha-5/beta-1 is a receptor for fibrinogen. Integrin alpha-1/beta-1, alpha-2/beta-1, alpha-6/beta-1 and alpha-7/beta-1 are receptors for lamimin. Integrin alpha-6/beta-1 (ITGA6:ITGB1) is present in oocytes and is involved in sperm-egg fusion (By similarity). Integrin alpha-4/beta-1 is a receptor for VCAM1. It recognizes the sequence Q-I-D-S in VCAM1. Integrin alpha-9/beta-1 is a receptor for VCAM1, cytotactin and osteopontin. It recognizes the sequence A-E-I-D-G-I-E-L in cytotactin. Integrin alpha-3/beta-1 is a receptor for epiligrin, thrombospondin and CSPG4. Alpha-3/beta-1 may mediate with LGALS3 the stimulation by CSPG4 of endothelial cells migration. Integrin alpha-V/beta-1 is a receptor for vitronectin. Beta-1 integrins recognize the sequence R-G-D in a wide array of ligands. When associated with alpha-7 integrin, regulates cell adhesion and laminin matrix deposition. Involved in promoting endothelial cell motility and angiogenesis. Involved in osteoblast compaction through the fibronectin fibrillogenesis cell-mediated matrix assembly process and the formation of mineralized bone nodules. May be involved in up-regulation of the activity of kinases such as PKC via binding to KRT1. Together with KRT1 and RACK1, serves as a platform for SRC activation or inactivation. Plays a mechanistic adhesive role during telophase, required for the successful completion of cytokinesis. Integrin alpha-3/beta-1 provides a docking site for FAP (seprase) at invadopodia plasma membranes in a collagen-dependent manner and hence may participate in the adhesion, formation of invadopodia and matrix degradation processes, promoting cell invasion. ITGA4:ITGB1 binds to fractalkine (CX3CL1) and may act as its coreceptor in CX3CR1-dependent fractalkine signaling (PubMed:23125415, PubMed:24789099). ITGA4:ITGB1 and ITGA5:ITGB1 bind to PLA2G2A via a site (site 2) which is distinct from the classical ligand-binding site (site 1) and this induces integrin conformational changes and enhanced ligand binding to site 1 (PubMed:18635536, PubMed:25398877). ITGA5:ITGB1 acts as a receptor for fibrillin-1 (FBN1) and mediates R-G-D-dependent cell adhesion to FBN1 (PubMed:12807887, PubMed:17158881). ITGA5:ITGB1 is a receptor for IL1B and binding is essential for IL1B signaling (PubMed:29030430). ITGA5:ITGB3 is a receptor for soluble CD40LG and is required for CD40/CD40LG signaling (PubMed:31331973). {ECO:0000250|UniProtKB:P09055, ECO:0000269|PubMed:10455171, ECO:0000269|PubMed:12473654, ECO:0000269|PubMed:12807887, ECO:0000269|PubMed:16256741, ECO:0000269|PubMed:17158881, ECO:0000269|PubMed:18635536, ECO:0000269|PubMed:18804435, ECO:0000269|PubMed:19064666, ECO:0000269|PubMed:21768292, ECO:0000269|PubMed:23125415, ECO:0000269|PubMed:24789099, ECO:0000269|PubMed:25398877, ECO:0000269|PubMed:29030430, ECO:0000269|PubMed:31331973, ECO:0000269|PubMed:7523423}.; FUNCTION: [Isoform 2]: Interferes with isoform 1 resulting in a dominant negative effect on cell adhesion and migration (in vitro). {ECO:0000305|PubMed:2249781}.; FUNCTION: [Isoform 5]: Isoform 5 displaces isoform 1 in striated muscles. {ECO:0000250|UniProtKB:P09055}.; FUNCTION: (Microbial infection) Integrin ITGA2:ITGB1 acts as a receptor for Human echoviruses 1 and 8. {ECO:0000269|PubMed:8411387}.; FUNCTION: (Microbial infection) Acts as a receptor for Cytomegalovirus/HHV-5. {ECO:0000269|PubMed:20660204}.; FUNCTION: (Microbial infection) Acts as a receptor for Epstein-Barr virus/HHV-4. {ECO:0000269|PubMed:17945327}.; FUNCTION: (Microbial infection) Integrin ITGA5:ITGB1 acts as a receptor for Human parvovirus B19. {ECO:0000269|PubMed:12907437}.; FUNCTION: (Microbial infection) Integrin ITGA2:ITGB1 acts as a receptor for Human rotavirus. {ECO:0000269|PubMed:12941907}.; FUNCTION: (Microbial infection) Acts as a receptor for Mammalian reovirus. {ECO:0000269|PubMed:16501085}.; FUNCTION: (Microbial infection) In case of HIV-1 infection, integrin ITGA5:ITGB1 binding to extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcoma lesions. {ECO:0000269|PubMed:10397733}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516140_378777799.0DomainNote=VWFA
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517140_378777826.0DomainNote=VWFA
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516140_378777799.0DomainNote=VWFA
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416140_3787771217.0DomainNote=VWFA
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516295_314777799.0RegionCX3CL1-binding
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516466_635777799.0RegionNote=Cysteine-rich tandem repeats
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517295_314777826.0RegionCX3CL1-binding
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517466_635777826.0RegionNote=Cysteine-rich tandem repeats
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516295_314777799.0RegionCX3CL1-binding
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516466_635777799.0RegionNote=Cysteine-rich tandem repeats
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416295_3147771217.0RegionCX3CL1-binding
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416466_6357771217.0RegionNote=Cysteine-rich tandem repeats
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516466_515777799.0RepeatNote=I
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516516_559777799.0RepeatNote=II
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516560_598777799.0RepeatNote=III
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516599_635777799.0RepeatNote=IV
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517466_515777826.0RepeatNote=I
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517516_559777826.0RepeatNote=II
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517560_598777826.0RepeatNote=III
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517599_635777826.0RepeatNote=IV
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516466_515777799.0RepeatNote=I
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516516_559777799.0RepeatNote=II
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516560_598777799.0RepeatNote=III
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516599_635777799.0RepeatNote=IV
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416466_5157771217.0RepeatNote=I
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416516_5597771217.0RepeatNote=II
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416560_5987771217.0RepeatNote=III
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416599_6357771217.0RepeatNote=IV
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-151621_728777799.0Topological domainExtracellular
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-151721_728777826.0Topological domainExtracellular
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-151621_728777799.0Topological domainExtracellular
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-141621_7287771217.0Topological domainExtracellular
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516729_751777799.0TransmembraneHelical
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517729_751777826.0TransmembraneHelical
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516729_751777799.0TransmembraneHelical
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416729_7517771217.0TransmembraneHelical
TgeneRIMS2chr10:33197296chr8:104955001ENST000002622319211257_13756881189.0DomainC2 2
TgeneRIMS2chr10:33197296chr8:104955001ENST00000262231921805_9286881189.0DomainC2 1
TgeneRIMS2chr10:33197296chr8:104955001ENST00000339750061257_13750286.0DomainC2 2
TgeneRIMS2chr10:33197296chr8:104955001ENST000003397500626_1850286.0DomainRabBD
TgeneRIMS2chr10:33197296chr8:104955001ENST0000033975006668_7540286.0DomainPDZ
TgeneRIMS2chr10:33197296chr8:104955001ENST0000033975006805_9280286.0DomainC2 1
TgeneRIMS2chr10:33197296chr8:104955001ENST0000040609112241257_13758491350.0DomainC2 2
TgeneRIMS2chr10:33197296chr8:104955001ENST000005077409221257_13756411164.0DomainC2 2
TgeneRIMS2chr10:33197296chr8:104955001ENST00000507740922668_7546411164.0DomainPDZ
TgeneRIMS2chr10:33197296chr8:104955001ENST00000507740922805_9286411164.0DomainC2 1
TgeneRIMS2chr10:33197296chr8:104955001ENST0000033975006117_1730286.0Zinc fingerFYVE-type

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516752_798777799.0Topological domainCytoplasmic
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517752_798777826.0Topological domainCytoplasmic
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516752_798777799.0Topological domainCytoplasmic
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416752_7987771217.0Topological domainCytoplasmic
TgeneRIMS2chr10:33197296chr8:104955001ENST0000026223192126_1856881189.0DomainRabBD
TgeneRIMS2chr10:33197296chr8:104955001ENST00000262231921668_7546881189.0DomainPDZ
TgeneRIMS2chr10:33197296chr8:104955001ENST00000406091122426_1858491350.0DomainRabBD
TgeneRIMS2chr10:33197296chr8:104955001ENST000004060911224668_7548491350.0DomainPDZ
TgeneRIMS2chr10:33197296chr8:104955001ENST000004060911224805_9288491350.0DomainC2 1
TgeneRIMS2chr10:33197296chr8:104955001ENST0000050774092226_1856411164.0DomainRabBD
TgeneRIMS2chr10:33197296chr8:104955001ENST00000262231921117_1736881189.0Zinc fingerFYVE-type
TgeneRIMS2chr10:33197296chr8:104955001ENST000004060911224117_1738491350.0Zinc fingerFYVE-type
TgeneRIMS2chr10:33197296chr8:104955001ENST00000507740922117_1736411164.0Zinc fingerFYVE-type


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Fusion Gene Sequence for ITGB1-RIMS2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>40513_40513_1_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000262231_length(transcript)=4009nt_BP=2467nt
GAGCCAGCCCAGCCGCGTTCCGAACGTGAGGGTCGCCGGCCTGGGCGCTGTCACGTCGGGGCTGCCGGAGCTGCGGGGGACCGGGCCCGA
ACGGCCCCTGACACCTGCGGTCTCCCGCCGGGCTGGGCAAGCGCAGATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGT
TTGCTGTGTGTTTGCTCAAACAGATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTG
TGGGTGGTGCACAAATTCAACATTTTTACAGGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGTTG
CCCTCCAGATGACATAGAAAATCCCAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACCAACCGTAGCAAAGGAACAGCAGAGAA
GCTCAAGCCAGAGGATATTACTCAGATCCAACCACAGCAGTTGGTTTTGCGATTAAGATCAGGGGAGCCACAGACATTTACATTAAAATT
CAAGAGAGCTGAAGACTATCCCATTGACCTCTACTACCTTATGGACCTGTCTTACTCAATGAAAGACGATTTGGAGAATGTAAAAAGTCT
TGGAACAGATCTGATGAATGAAATGAGGAGGATTACTTCGGACTTCAGAATTGGATTTGGCTCATTTGTGGAAAAGACTGTGATGCCTTA
CATTAGCACAACACCAGCTAAGCTCAGGAACCCTTGCACAAGTGAACAGAACTGCACCAGCCCATTTAGCTACAAAAATGTGCTCAGTCT
TACTAATAAAGGAGAAGTATTTAATGAACTTGTTGGAAAACAGCGCATATCTGGAAATTTGGATTCTCCAGAAGGTGGTTTCGATGCCAT
CATGCAAGTTGCAGTTTGTGGATCACTGATTGGCTGGAGGAATGTTACACGGCTGCTGGTGTTTTCCACAGATGCCGGGTTTCACTTTGC
TGGAGATGGGAAACTTGGTGGCATTGTTTTACCAAATGATGGACAATGTCACCTGGAAAATAATATGTACACAATGAGCCATTATTATGA
TTATCCTTCTATTGCTCACCTTGTCCAGAAACTGAGTGAAAATAATATTCAGACAATTTTTGCAGTTACTGAAGAATTTCAGCCTGTTTA
CAAGGAGCTGAAAAACTTGATCCCTAAGTCAGCAGTAGGAACATTATCTGCAAATTCTAGCAATGTAATTCAGTTGATCATTGATGCATA
CAATTCCCTTTCCTCAGAAGTCATTTTGGAAAACGGCAAATTGTCAGAAGGCGTAACAATAAGTTACAAATCTTACTGCAAGAACGGGGT
GAATGGAACAGGGGAAAATGGAAGAAAATGTTCCAATATTTCCATTGGAGATGAGGTTCAATTTGAAATTAGCATAACTTCAAATAAGTG
TCCAAAAAAGGATTCTGACAGCTTTAAAATTAGGCCTCTGGGCTTTACGGAGGAAGTAGAGGTTATTCTTCAGTACATCTGTGAATGTGA
ATGCCAAAGCGAAGGCATCCCTGAAAGTCCCAAGTGTCATGAAGGAAATGGGACATTTGAGTGTGGCGCGTGCAGGTGCAATGAAGGGCG
TGTTGGTAGACATTGTGAATGCAGCACAGATGAAGTTAACAGTGAAGACATGGATGCTTACTGCAGGAAAGAAAACAGTTCAGAAATCTG
CAGTAACAATGGAGAGTGCGTCTGCGGACAGTGTGTTTGTAGGAAGAGGGATAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTG
TGATAATTTCAACTGTGATAGATCCAATGGCTTAATTTGTGGAGGAAATGGTGTTTGCAAGTGTCGTGTGTGTGAGTGCAACCCCAACTA
CACTGGCAGTGCATGTGACTGTTCTTTGGATACTAGTACTTGTGAAGCCAGCAACGGACAGATCTGCAATGGCCGGGGCATCTGCGAGTG
TGGTGTCTGTAAGTGTACAGATCCGAAGTTTCAAGGGCAAACGTGTGAGATGTGTCAGACCTGCCTTGGTGTCTGTGCTGAGCATAAAGA
ATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAAGACACATGCACACAGGAATGTTCCTATTTTAACATTACCAAGGTAGAAAG
TCGGGACAAATTACCCCAGCCGGTCCAACCTGATCCTGTGTCCCATTGTAAGGAGAAGGATGTTGACGACTGTTGGTTCTATTTTACGTA
TTCAGTGAATGGGAACAACGAGGTCATGGTTCATGTTGTGGAGAATCCAGAGTGTCCCACTGGTCCAGACATCATTCCAATTGTAGCTGG
TGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCATTACTGCTGATATGGAAGCTTTTAATGATAATTCATGACAGAAGGGAGTTTGCTAA
ATTTGAAAAGGAGAAAATGAATGCCAAATGGGACACGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAA
ACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACG
GAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACA
TGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCG
AGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCG
CACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGGGATTG
TGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCAC
TGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCA
TCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGG
AACGTTGGATAGAAAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTG
GATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTT
GGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGG
TGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAA
GACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCT
GGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCAT
GGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCC
ACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTC

>40513_40513_1_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000262231_length(amino acids)=1309AA_BP=809
MGAVTSGLPELRGTGPERPLTPAVSRRAGQAQMNLQPIFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGM
PTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYL
MDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK
QRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSE
NNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNI
SIGDEVQFEISITSNKCPKKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVN
SEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLDTST
CEASNGQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQCRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPV
SHCKEKDVDDCWFYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTI
LIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVP
EQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDRDCEAADRQPYHRSRS
TEQRPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQLPPKGTLDRKAGGKKLRS
TVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQL
EVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILL

--------------------------------------------------------------
>40513_40513_2_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000406091_length(transcript)=3970nt_BP=2467nt
GAGCCAGCCCAGCCGCGTTCCGAACGTGAGGGTCGCCGGCCTGGGCGCTGTCACGTCGGGGCTGCCGGAGCTGCGGGGGACCGGGCCCGA
ACGGCCCCTGACACCTGCGGTCTCCCGCCGGGCTGGGCAAGCGCAGATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGT
TTGCTGTGTGTTTGCTCAAACAGATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTG
TGGGTGGTGCACAAATTCAACATTTTTACAGGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGTTG
CCCTCCAGATGACATAGAAAATCCCAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACCAACCGTAGCAAAGGAACAGCAGAGAA
GCTCAAGCCAGAGGATATTACTCAGATCCAACCACAGCAGTTGGTTTTGCGATTAAGATCAGGGGAGCCACAGACATTTACATTAAAATT
CAAGAGAGCTGAAGACTATCCCATTGACCTCTACTACCTTATGGACCTGTCTTACTCAATGAAAGACGATTTGGAGAATGTAAAAAGTCT
TGGAACAGATCTGATGAATGAAATGAGGAGGATTACTTCGGACTTCAGAATTGGATTTGGCTCATTTGTGGAAAAGACTGTGATGCCTTA
CATTAGCACAACACCAGCTAAGCTCAGGAACCCTTGCACAAGTGAACAGAACTGCACCAGCCCATTTAGCTACAAAAATGTGCTCAGTCT
TACTAATAAAGGAGAAGTATTTAATGAACTTGTTGGAAAACAGCGCATATCTGGAAATTTGGATTCTCCAGAAGGTGGTTTCGATGCCAT
CATGCAAGTTGCAGTTTGTGGATCACTGATTGGCTGGAGGAATGTTACACGGCTGCTGGTGTTTTCCACAGATGCCGGGTTTCACTTTGC
TGGAGATGGGAAACTTGGTGGCATTGTTTTACCAAATGATGGACAATGTCACCTGGAAAATAATATGTACACAATGAGCCATTATTATGA
TTATCCTTCTATTGCTCACCTTGTCCAGAAACTGAGTGAAAATAATATTCAGACAATTTTTGCAGTTACTGAAGAATTTCAGCCTGTTTA
CAAGGAGCTGAAAAACTTGATCCCTAAGTCAGCAGTAGGAACATTATCTGCAAATTCTAGCAATGTAATTCAGTTGATCATTGATGCATA
CAATTCCCTTTCCTCAGAAGTCATTTTGGAAAACGGCAAATTGTCAGAAGGCGTAACAATAAGTTACAAATCTTACTGCAAGAACGGGGT
GAATGGAACAGGGGAAAATGGAAGAAAATGTTCCAATATTTCCATTGGAGATGAGGTTCAATTTGAAATTAGCATAACTTCAAATAAGTG
TCCAAAAAAGGATTCTGACAGCTTTAAAATTAGGCCTCTGGGCTTTACGGAGGAAGTAGAGGTTATTCTTCAGTACATCTGTGAATGTGA
ATGCCAAAGCGAAGGCATCCCTGAAAGTCCCAAGTGTCATGAAGGAAATGGGACATTTGAGTGTGGCGCGTGCAGGTGCAATGAAGGGCG
TGTTGGTAGACATTGTGAATGCAGCACAGATGAAGTTAACAGTGAAGACATGGATGCTTACTGCAGGAAAGAAAACAGTTCAGAAATCTG
CAGTAACAATGGAGAGTGCGTCTGCGGACAGTGTGTTTGTAGGAAGAGGGATAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTG
TGATAATTTCAACTGTGATAGATCCAATGGCTTAATTTGTGGAGGAAATGGTGTTTGCAAGTGTCGTGTGTGTGAGTGCAACCCCAACTA
CACTGGCAGTGCATGTGACTGTTCTTTGGATACTAGTACTTGTGAAGCCAGCAACGGACAGATCTGCAATGGCCGGGGCATCTGCGAGTG
TGGTGTCTGTAAGTGTACAGATCCGAAGTTTCAAGGGCAAACGTGTGAGATGTGTCAGACCTGCCTTGGTGTCTGTGCTGAGCATAAAGA
ATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAAGACACATGCACACAGGAATGTTCCTATTTTAACATTACCAAGGTAGAAAG
TCGGGACAAATTACCCCAGCCGGTCCAACCTGATCCTGTGTCCCATTGTAAGGAGAAGGATGTTGACGACTGTTGGTTCTATTTTACGTA
TTCAGTGAATGGGAACAACGAGGTCATGGTTCATGTTGTGGAGAATCCAGAGTGTCCCACTGGTCCAGACATCATTCCAATTGTAGCTGG
TGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCATTACTGCTGATATGGAAGCTTTTAATGATAATTCATGACAGAAGGGAGTTTGCTAA
ATTTGAAAAGGAGAAAATGAATGCCAAATGGGACACGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAA
ACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACG
GAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACA
TGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCG
AGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCG
CACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGGGATTG
TGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCAC
TGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCA
TCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGG
AACGTTGGATAGAAAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTG
GATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTT
GGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGG
TGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAA
GACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCT
GGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCAT
GGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCC
ACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTC

>40513_40513_2_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000406091_length(amino acids)=1310AA_BP=809
MGAVTSGLPELRGTGPERPLTPAVSRRAGQAQMNLQPIFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGM
PTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYL
MDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK
QRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSE
NNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNI
SIGDEVQFEISITSNKCPKKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVN
SEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLDTST
CEASNGQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQCRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPV
SHCKEKDVDDCWFYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTI
LIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVP
EQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDRDCEAADRQPYHRSRS
TEQRPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQLPPKGTLDRKAGGKKLRS
TVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQL
EVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILL

--------------------------------------------------------------
>40513_40513_3_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000507740_length(transcript)=8310nt_BP=2467nt
GAGCCAGCCCAGCCGCGTTCCGAACGTGAGGGTCGCCGGCCTGGGCGCTGTCACGTCGGGGCTGCCGGAGCTGCGGGGGACCGGGCCCGA
ACGGCCCCTGACACCTGCGGTCTCCCGCCGGGCTGGGCAAGCGCAGATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGT
TTGCTGTGTGTTTGCTCAAACAGATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTG
TGGGTGGTGCACAAATTCAACATTTTTACAGGAAGGAATGCCTACTTCTGCACGATGTGATGATTTAGAAGCCTTAAAAAAGAAGGGTTG
CCCTCCAGATGACATAGAAAATCCCAGAGGCTCCAAAGATATAAAGAAAAATAAAAATGTAACCAACCGTAGCAAAGGAACAGCAGAGAA
GCTCAAGCCAGAGGATATTACTCAGATCCAACCACAGCAGTTGGTTTTGCGATTAAGATCAGGGGAGCCACAGACATTTACATTAAAATT
CAAGAGAGCTGAAGACTATCCCATTGACCTCTACTACCTTATGGACCTGTCTTACTCAATGAAAGACGATTTGGAGAATGTAAAAAGTCT
TGGAACAGATCTGATGAATGAAATGAGGAGGATTACTTCGGACTTCAGAATTGGATTTGGCTCATTTGTGGAAAAGACTGTGATGCCTTA
CATTAGCACAACACCAGCTAAGCTCAGGAACCCTTGCACAAGTGAACAGAACTGCACCAGCCCATTTAGCTACAAAAATGTGCTCAGTCT
TACTAATAAAGGAGAAGTATTTAATGAACTTGTTGGAAAACAGCGCATATCTGGAAATTTGGATTCTCCAGAAGGTGGTTTCGATGCCAT
CATGCAAGTTGCAGTTTGTGGATCACTGATTGGCTGGAGGAATGTTACACGGCTGCTGGTGTTTTCCACAGATGCCGGGTTTCACTTTGC
TGGAGATGGGAAACTTGGTGGCATTGTTTTACCAAATGATGGACAATGTCACCTGGAAAATAATATGTACACAATGAGCCATTATTATGA
TTATCCTTCTATTGCTCACCTTGTCCAGAAACTGAGTGAAAATAATATTCAGACAATTTTTGCAGTTACTGAAGAATTTCAGCCTGTTTA
CAAGGAGCTGAAAAACTTGATCCCTAAGTCAGCAGTAGGAACATTATCTGCAAATTCTAGCAATGTAATTCAGTTGATCATTGATGCATA
CAATTCCCTTTCCTCAGAAGTCATTTTGGAAAACGGCAAATTGTCAGAAGGCGTAACAATAAGTTACAAATCTTACTGCAAGAACGGGGT
GAATGGAACAGGGGAAAATGGAAGAAAATGTTCCAATATTTCCATTGGAGATGAGGTTCAATTTGAAATTAGCATAACTTCAAATAAGTG
TCCAAAAAAGGATTCTGACAGCTTTAAAATTAGGCCTCTGGGCTTTACGGAGGAAGTAGAGGTTATTCTTCAGTACATCTGTGAATGTGA
ATGCCAAAGCGAAGGCATCCCTGAAAGTCCCAAGTGTCATGAAGGAAATGGGACATTTGAGTGTGGCGCGTGCAGGTGCAATGAAGGGCG
TGTTGGTAGACATTGTGAATGCAGCACAGATGAAGTTAACAGTGAAGACATGGATGCTTACTGCAGGAAAGAAAACAGTTCAGAAATCTG
CAGTAACAATGGAGAGTGCGTCTGCGGACAGTGTGTTTGTAGGAAGAGGGATAATACAAATGAAATTTATTCTGGCAAATTCTGCGAGTG
TGATAATTTCAACTGTGATAGATCCAATGGCTTAATTTGTGGAGGAAATGGTGTTTGCAAGTGTCGTGTGTGTGAGTGCAACCCCAACTA
CACTGGCAGTGCATGTGACTGTTCTTTGGATACTAGTACTTGTGAAGCCAGCAACGGACAGATCTGCAATGGCCGGGGCATCTGCGAGTG
TGGTGTCTGTAAGTGTACAGATCCGAAGTTTCAAGGGCAAACGTGTGAGATGTGTCAGACCTGCCTTGGTGTCTGTGCTGAGCATAAAGA
ATGTGTTCAGTGCAGAGCCTTCAATAAAGGAGAAAAGAAAGACACATGCACACAGGAATGTTCCTATTTTAACATTACCAAGGTAGAAAG
TCGGGACAAATTACCCCAGCCGGTCCAACCTGATCCTGTGTCCCATTGTAAGGAGAAGGATGTTGACGACTGTTGGTTCTATTTTACGTA
TTCAGTGAATGGGAACAACGAGGTCATGGTTCATGTTGTGGAGAATCCAGAGTGTCCCACTGGTCCAGACATCATTCCAATTGTAGCTGG
TGTGGTTGCTGGAATTGTTCTTATTGGCCTTGCATTACTGCTGATATGGAAGCTTTTAATGATAATTCATGACAGAAGGGAGTTTGCTAA
ATTTGAAAAGGAGAAAATGAATGCCAAATGGGACACGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAA
ACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACG
GAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACA
TGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCG
AGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCG
CACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGTCATTT
TCTTACTCTACCTCGCTCCAGATACAGTCAGACCATTGACCATCATCACAGGGATGGCAGGGATTGTGAAGCAGCAGATAGACAGCCATA
TCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCAT
GAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGAC
AAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAAAGCAGGAGG
TAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGA
GTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGA
TTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGA
CAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAA
AGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATT
ATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGT
GGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAAC
CTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAGCAGCTGTAAAAAAA
TTGTTGTCACAGCAACCAGCGTTACAAAAAAAAAAAAAAAAATCACAGGTTGCAAACCCTGGTAACACTGCATGCTTAATGTTGTGTCTT
CTGAGCCTGTTTCTAGGGATACAAAGCAATCCTGTGTTCTCAGAGGAAGTTGCACACATTGTGCCCTAAAGAAGGCCCTCAGGTGAAAGA
GCAGAGCTGTGAAGAACTATCAGATTTGGAATTCAATGACACTCGAGTTCTGGTCCAATCTGAAGCCATGGATTAATCTCAAAGAATCAG
TCAGTTTCATGCAACAGAAGCCCTTTTCAATGGCACCTTTATATTTTTATCATTCCTTTTTCTTCATTTATCTAACCCCAAAGCCCTGAT
ATGCCACAGAAATGGAGCTATACAGCCATGAAGCGGTGTTACAGGTGAGGAGTGTAATCCTAGGAAGCATCAGGTGAAAAGCAGGAGACC
AAAGAAGTGGTCAGGAACAATCATCAGCCCTCCTCTGGGCGGGAATCAGAGCAGTCAGTCCAGCAGGAAGAGTGGCAGACTTTGTAGCTC
CATGGGCACGTCAATTACTAATGCTAAGATGTGTTGGACTCTGAAAAACAAAATTCTGTGGCTACACTGTACTGAATGAAATTAAAGAAA
CTTTTTTTGCATGGACACAGATTAGCTGAATACTTAAATTATTTTCTTGGGGCTGCAACTTGCAAAAAAAAAAAAAAGAATAAAAATCAG
CCATTTTCAACAATTTATATTATTTTTAAAAATAAATTTCACTAGTGCATGGTTTTAAAAAGGAGAGAGAATGCAACAGGGTGATACAAA
GATACACCATGTTTATTCTTTAATCATAGTCTGTGTTTTGGCAGACATTACAAATGGAAATACTTTCTAGAAGATACTTAAAATTCTCTT
TATGTGACAAATAAGTATAATATATTCAATTTATTTCCATGTTAAATATACAAATCTTATGAAGTTCAATATGTGCAAATTTTTCACATC
TTTCTCCTTCTCTCACTTTACCTCTTCTCCCTCTTTTAAACTTTTCTTTCTCCCTGCCAGAGTGAACCTTATACTAAAAAATTACAAGTT
TTGATCTGATCCTCTCTCATACCCCATGTTTGATTCAGAGCTGTAGATGCCTCTGAATTTGCGAATTTCTCAAGGGAAAATTAACTTTAA
GAGCTTTCTTTATTTCAAGCATGTTGAAAAGGATTTTGCAACATGACTTGGGAGTACATTAAAGTAAGTCAGCATGTATTTGACGAAGAA
GATATTTGAACTTTTGCAGTTTATTGTACAGTGCATGGTAATTTTTTCACCTTTAAAATTCAGTTTACAGGAAAATTCTAAAATCATGTT
GCCATTGTGATGTCCAATAAATTTGTTTTTAGCACCAGCATTATTCATACAGGGGTTAAAGTATTATTTGTAGAAGGTCTTAGGTTTTGT
TTGTTTTTTAATCATTTAAAGCAATTTCTTTAGCCAGTTTCCATTTACTATGTGAATAGAAGCACTGCTAAAAATTGGGAACCCTGAAAC
ACAGGGCTGTTTATTAATTCATTTTTCTGTAGTAAAATTCAATTTTTCACAAATTATATTTCTAAAGAAATATAGTAAACATAAATTTGC
AACAATTTTAAAGCTCCAGTTTTTAGGTGACTCAAAGAAAGTCATTATGCCTATTAATAGTTATTTGATGCCATCACCAAAAGTCTATGT
GAAAATCTCCTAAAGTCAAAACCCCTGCCTTTGGTTTTACAGACGGTTATTACCATTGGGTGGAGCTGCAAGGTCAAATTTCTCCTAAGT
TCCCCTATTTAGAGGAAAAGTCACTGGTTATTGTAATAAACCACCCATGGTTCTTTATGTACATTTTGATAACACATTATTATAGCTTGA
TTTTAATTTTTTGCATTAATTTTTGAAATCCACATACATCTCATTTGTTTAAATTAAGGCCATGCACAAATATTTTTTTTAGTTCAGTGC
TGACCATTAAAAACTATCATGCTTGATACGGTGCAAAAGTTAAAATGAGTATCACTAAAAATGCCTTCTTTTTATGTGGTGCAATATGAA
ATACACCAAGACTGTGTCTTGACATTCTGATGGACCCAGGTAAAGTTGTTAAAAGAACGAATAAAACTTTATTAAAATAATTTAGACACC
TGTGTACCAGCAACAATTGATTTAATAGACCTATAGTGTCTATACTATCCCTTAGAATAAAGGTTTATGATTTTCCTGATACTAAGATGC
AGTCACATAATCTTTTGTGCATATTCCTATACAAATTATTTCTAATTTTAATAAGAAGGACGTGACTACGGAATATTTGTACATACTTGT
CATTATGCAGTATTTATTTAAAAGTTGGTGTTTTTTTTTAATTTTCACATCTGCACCTCGACTTGTGGTTTAGTCATGTAACTAGCACTA
TGCCAGTGACCGTTGTTGCCCTGTACATAGTATGTTTGAAAAGTAAAGGGAATTCCAGTTGGGAAAAAAGGGCAGATTAGTCCTGTAATG
AACACCAACTAATGTAAATCAAATTCATTCTGGTGATGGTATTTAACACTTTAAATAAAACATTTTCTTTACAGGCGTCTGCAGTGCTTT
CTCTGACTTTTCTCCCCACACAGCCCTGAGCCTGCTGCAGCTCATTCCCTGAACTCATGTGTCATTTAAAGAATGAAATCACCGTCTCCT
ACTTCTCGATAACATAAGTGGACTGCTGGTCTTAGCAGCGGCCCTCAGTAGAGCATTTCTTTAAAACGCCAAAGGATTTCTGCTCACACT
ATGAAAAGGTGCTGTTTTTTAAAAGGTTGTTATTTTGGATTGAGTTTCTTTCTGATTAAATGACTCAGCAACTCACAGATTTTTTGAGTG
AAATTTTTAATTTAGTCATGGCCTTCACTGACAGCATAGTCACAAATACTCAGGCACAGGCTCTGCTAGCCCCTGGGTGAAGATGGCGAA
GGCATAACTGGCTTTATGCAGCATATGTGTTTCTGCTAAAGTGTCAGTTTTGCTTTGTGGGGAGTGGAGGGTGTGTTTTCGGGATGGGGA
GACGTGGTAACCTGACATGTAACAACCTGTCCGGAGACTAGCTTCTACGTGTGGATATGAATGGGTGAGAGGATTTCTCCATATCCTTCT
GGGGCGATTCCTCAACTGGGAGAAGGAAACCCTGCAGAGTTCTCATGGGAGTCTGCTTCAGGTTTGAAATTTAAGAGCTAGTTTGGATTC
ATGTTTAGTAATCGAACTGAAATCTAAGTCTAGCTGTCTCTCTATTCTTGGAAACAACCATTTCCTCCATTTCCAAAGACTCAACTCGAG
TCCAATTCCCCCTATCTGTCCCATATATTTTTCCTTTATCCCATATATACCCCCTACTCTAGTGAATTGTTTCTTTGTTGTTCATTCCTG
TTCTTTGTTGTTCATATACATTCCTGTATATGAACAACATTTTCCTTTATCCCATATATACCCCCTACTCTAGTGAATTGTTTCTTTGTT
GTTCATTCCTGTTTCTTTGTTGTTCATATACATTCCTGTTATAAAAATTCCCTTCCCTTTCTTATGTGCCCTCTCCTGAAAAGCCCTTCT
ACTTTTCTCAATAATGATCCATGCGAGTCCCTTCTTGCAACTCCCAGCTCACGAATGAGCTCTTTCGGCAACTCCTGACTAAACCCTAAC
AACATGGCTGCCATTGATGCCAACACCTTCACTTTCCCAGGGACCCCAGATGCCAAGGCTCCATAGGCAACAATAAAGGATATGATGGTC
CTGTAGTGGGTATGATAGAATTAGGCAAGAGATCACCAAAGCTGTCTGCCTACTACTGATGTAAACCTTGACATTCTGTGCACGTAAAAA
TCATGTGCTCAATGTGTTTGTCTCAACTCCCTCAGCTCGTGATGCCCTCAGGGTTCTGTGGGCATTTATGCACTGAAGAAACAGGAGTTC
ACACATCCACCTCTGGACTGTGAAATGTGTATTGAGAAATACTTTGCAAGAGAGAATTTTTTTAAGTGAACAAACAACAAGTCTGTGCCA
CACACATCTTCCATATGCCCTGACTCAGGTCACTTAATCTCCAGGATTTCATTTCCTCACCTGGAAAATATGGAGTTTGAGGTAGATTCT
CATCTATCATTAAATCAACACTTTAACTAAAACGTAAGCTCCTTCAGGGCAGAGACCGTATCTTCAGTATCAAAAACAATGTTTGACACA

>40513_40513_3_ITGB1-RIMS2_ITGB1_chr10_33197296_ENST00000396033_RIMS2_chr8_104955001_ENST00000507740_length(amino acids)=1331AA_BP=809
MGAVTSGLPELRGTGPERPLTPAVSRRAGQAQMNLQPIFWIGLISSVCCVFAQTDENRCLKANAKSCGECIQAGPNCGWCTNSTFLQEGM
PTSARCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTAEKLKPEDITQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYL
MDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTNKGEVFNELVGK
QRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSE
NNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNI
SIGDEVQFEISITSNKCPKKDSDSFKIRPLGFTEEVEVILQYICECECQSEGIPESPKCHEGNGTFECGACRCNEGRVGRHCECSTDEVN
SEDMDAYCRKENSSEICSNNGECVCGQCVCRKRDNTNEIYSGKFCECDNFNCDRSNGLICGGNGVCKCRVCECNPNYTGSACDCSLDTST
CEASNGQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQCRAFNKGEKKDTCTQECSYFNITKVESRDKLPQPVQPDPV
SHCKEKDVDDCWFYFTYSVNGNNEVMVHVVENPECPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTI
LIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVP
EQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDSHFLTLPRSRYSQTID
HHHRDGRDCEAADRQPYHRSRSTEQRPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGR
QLPQLPPKGTLDRKAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGR
QTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQI

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Fusion Gene PPI Analysis for ITGB1-RIMS2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneITGB1chr10:33197296chr8:104955001ENST00000302278-1516785_792777.0799.0ITGB1BP1
HgeneITGB1chr10:33197296chr8:104955001ENST00000374956-1517785_792777.0826.0ITGB1BP1
HgeneITGB1chr10:33197296chr8:104955001ENST00000396033-1516785_792777.0799.0ITGB1BP1
HgeneITGB1chr10:33197296chr8:104955001ENST00000423113-1416785_792777.01217.0ITGB1BP1


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ITGB1-RIMS2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ITGB1-RIMS2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource