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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:ITGB2-CD74 (FusionGDB2 ID:40518) |
Fusion Gene Summary for ITGB2-CD74 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: ITGB2-CD74 | Fusion gene ID: 40518 | Hgene | Tgene | Gene symbol | ITGB2 | CD74 | Gene ID | 3689 | 972 |
| Gene name | integrin subunit beta 2 | CD74 molecule | |
| Synonyms | CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7 | DHLAG|HLADG|II|Ia-GAMMA|p33 | |
| Cytomap | 21q22.3 | 5q33.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | integrin beta-2cell surface adhesion glycoprotein (LFA-1/CR3/P150,959 beta subunit precursor)complement component 3 receptor 3 and 4 subunitcomplement receptor C3 beta-subunitintegrin beta chain, beta 2integrin, beta 2 (complement component 3 recepto | HLA class II histocompatibility antigen gamma chainCD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)CD74 molecule, major histocompatibility complex, class II invariant chainHLA-DR antigens-associated | |
| Modification date | 20200322 | 20200313 | |
| UniProtAcc | P05107 | P04233 | |
| Ensembl transtripts involved in fusion gene | ENST00000302347, ENST00000355153, ENST00000397846, ENST00000397850, ENST00000397852, ENST00000397854, ENST00000397857, ENST00000523126, | ENST00000009530, ENST00000353334, ENST00000377795, ENST00000524315, | |
| Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 31 X 31 X 11=10571 |
| # samples | 3 | 39 | |
| ** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(39/10571*10)=-4.76049392566144 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: ITGB2 [Title/Abstract] AND CD74 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | ITGB2(46351729)-CD74(149792295), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | ITGB2 | GO:0007155 | cell adhesion | 19703720 |
| Hgene | ITGB2 | GO:0007159 | leukocyte cell-cell adhesion | 12885943 |
| Hgene | ITGB2 | GO:0030593 | neutrophil chemotaxis | 12885943 |
| Hgene | ITGB2 | GO:0050730 | regulation of peptidyl-tyrosine phosphorylation | 12885943 |
| Tgene | CD74 | GO:0001516 | prostaglandin biosynthetic process | 12782713 |
| Tgene | CD74 | GO:0001934 | positive regulation of protein phosphorylation | 24942581 |
| Tgene | CD74 | GO:0002792 | negative regulation of peptide secretion | 19849849 |
| Tgene | CD74 | GO:0033674 | positive regulation of kinase activity | 24942581 |
| Tgene | CD74 | GO:0043066 | negative regulation of apoptotic process | 12782713 |
| Tgene | CD74 | GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | 24942581 |
| Tgene | CD74 | GO:0043410 | positive regulation of MAPK cascade | 24942581 |
| Tgene | CD74 | GO:0043518 | negative regulation of DNA damage response, signal transduction by p53 class mediator | 17045821 |
| Tgene | CD74 | GO:0045657 | positive regulation of monocyte differentiation | 24942581 |
| Tgene | CD74 | GO:0045893 | positive regulation of transcription, DNA-templated | 24942581 |
| Tgene | CD74 | GO:0046598 | positive regulation of viral entry into host cell | 24942581 |
| Tgene | CD74 | GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | 17045821 |
| Tgene | CD74 | GO:0070374 | positive regulation of ERK1 and ERK2 cascade | 17045821|24942581 |
| Fusion gene breakpoints across ITGB2 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across CD74 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | CESC | TCGA-C5-A1MH-01A | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
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Fusion Gene ORF analysis for ITGB2-CD74 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000302347 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000302347 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000302347 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000302347 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000355153 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000355153 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000355153 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000355153 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397846 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397846 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397846 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397846 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397850 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397850 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397850 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397850 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397852 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397852 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397852 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397852 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397854 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397854 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397854 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397854 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397857 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397857 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397857 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000397857 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000523126 | ENST00000009530 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000523126 | ENST00000353334 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000523126 | ENST00000377795 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| intron-3CDS | ENST00000523126 | ENST00000524315 | ITGB2 | chr21 | 46351729 | - | CD74 | chr5 | 149792295 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for ITGB2-CD74 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for ITGB2-CD74 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:46351729/:149792295) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| ITGB2 | CD74 |
| FUNCTION: Integrin ITGAL/ITGB2 is a receptor for ICAM1, ICAM2, ICAM3 and ICAM4. Integrin ITGAL/ITGB2 is also a receptor for the secreted form of ubiquitin-like protein ISG15; the interaction is mediated by ITGAL (PubMed:29100055). Integrins ITGAM/ITGB2 and ITGAX/ITGB2 are receptors for the iC3b fragment of the third complement component and for fibrinogen. Integrin ITGAX/ITGB2 recognizes the sequence G-P-R in fibrinogen alpha-chain. Integrin ITGAM/ITGB2 recognizes P1 and P2 peptides of fibrinogen gamma chain. Integrin ITGAM/ITGB2 is also a receptor for factor X. Integrin ITGAD/ITGB2 is a receptor for ICAM3 and VCAM1. Contributes to natural killer cell cytotoxicity (PubMed:15356110). Involved in leukocyte adhesion and transmigration of leukocytes including T-cells and neutrophils (PubMed:11812992, PubMed:28807980). Triggers neutrophil transmigration during lung injury through PTK2B/PYK2-mediated activation (PubMed:18587400). Integrin ITGAL/ITGB2 in association with ICAM3, contributes to apoptotic neutrophil phagocytosis by macrophages (PubMed:23775590). In association with alpha subunit ITGAM/CD11b, required for CD177-PRTN3-mediated activation of TNF primed neutrophils (PubMed:21193407). {ECO:0000269|PubMed:11812992, ECO:0000269|PubMed:15356110, ECO:0000269|PubMed:18587400, ECO:0000269|PubMed:21193407, ECO:0000269|PubMed:23775590, ECO:0000269|PubMed:28807980, ECO:0000269|PubMed:29100055}. | FUNCTION: Plays a critical role in MHC class II antigen processing by stabilizing peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to the endosomal/lysosomal system where the antigen processing and binding of antigenic peptides to MHC class II takes place. Serves as cell surface receptor for the cytokine MIF.; FUNCTION: [Class-II-associated invariant chain peptide]: Binds to the peptide-binding site of MHC class II alpha/beta heterodimers forming an alpha-beta-CLIP complex, thereby preventing the loading of antigenic peptides to the MHC class II complex until its release by HLA-DM in the endosome. {ECO:0000269|PubMed:1448172}.; FUNCTION: [Isoform p41]: Stabilizes the conformation of mature CTSL by binding to its active site and serving as a chaperone to help maintain a pool of mature enzyme in endocytic compartments and extracellular space of antigen-presenting cells (APCs). Has antiviral activity by stymieing the endosomal entry of Ebola virus and coronaviruses, including SARS-CoV-2 (PubMed:32855215). Disrupts cathepsin-mediated Ebola virus glycoprotein processing, which prevents viral fusion and entry. This antiviral activity is specific to p41 isoform (PubMed:32855215). {ECO:0000250|UniProtKB:P04441, ECO:0000269|PubMed:32855215}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for ITGB2-CD74 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for ITGB2-CD74 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for ITGB2-CD74 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for ITGB2-CD74 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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