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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:KMT2E-LHFPL3 (FusionGDB2 ID:43285)

Fusion Gene Summary for KMT2E-LHFPL3

check button Fusion gene summary
Fusion gene informationFusion gene name: KMT2E-LHFPL3
Fusion gene ID: 43285
HgeneTgene
Gene symbol

KMT2E

LHFPL3

Gene ID

55904

375612

Gene namelysine methyltransferase 2E (inactive)LHFPL tetraspan subfamily member 3
SynonymsHDCMC04P|MLL5|NKp44L|ODLUROLHFPL4
Cytomap

7q22.3

7q22.2-q22.3

Type of geneprotein-codingprotein-coding
Descriptioninactive histone-lysine N-methyltransferase 2Ehistone-lysine N-methyltransferase 2Ehistone-lysine N-methyltransferase MLL5inactive lysine N-methyltransferase 2Elysine (K)-specific methyltransferase 2Emyeloid/lymphoid or mixed-lineage leukemia 5 (tritLHFPL tetraspan subfamily member 3 proteinLHFP-like protein 3lipoma HMGIC fusion partner-like 3 proteinlipoma HMGIC fusion partner-like 4
Modification date2020031420200313
UniProtAcc

Q8IZD2

Q86UP9

Ensembl transtripts involved in fusion geneENST00000480368, ENST00000257745, 
ENST00000311117, ENST00000334877, 
ENST00000476671, ENST00000334914, 
ENST00000424859, ENST00000535008, 
ENST00000401970, ENST00000543266, 
Fusion gene scores* DoF score18 X 21 X 9=340210 X 12 X 8=960
# samples 2820
** MAII scorelog2(28/3402*10)=-3.60288440871842
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(20/960*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: KMT2E [Title/Abstract] AND LHFPL3 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointKMT2E(104654982)-LHFPL3(104546634), # samples:4
Anticipated loss of major functional domain due to fusion event.KMT2E-LHFPL3 seems lost the major protein functional domain in Hgene partner, which is a epigenetic factor due to the frame-shifted ORF.
KMT2E-LHFPL3 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
KMT2E-LHFPL3 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across KMT2E (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across LHFPL3 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4ESCATCGA-L5-A8NIKMT2Echr7

104681470

+LHFPL3chr7

104546634

+
ChimerDB4OVTCGA-24-0970-01BKMT2Echr7

104654982

+LHFPL3chr7

104546634

+
ChimerDB4STADTCGA-BR-8289-01AKMT2Echr7

104707254

+LHFPL3chr7

104485829

+
ChimerDB4STADTCGA-BR-8289-01AKMT2Echr7

104707254

+LHFPL3chr7

104546634

+
ChimerDB4STADTCGA-BR-8373-01AKMT2Echr7

104681470

+LHFPL3chr7

104485829

+
ChimerDB4STADTCGA-BR-8373-01AKMT2Echr7

104681470

+LHFPL3chr7

104546634

+
ChimerDB4STADTCGA-VQ-A91K-01AKMT2Echr7

104722244

+LHFPL3chr7

104377122

+
ChimerDB4STADTCGA-VQ-A925-01AKMT2Echr7

104654982

+LHFPL3chr7

104377122

+
ChimerDB4UCECTCGA-5B-A90C-01AKMT2Echr7

104654982

+LHFPL3chr7

104546634

+
ChimerDB4UCECTCGA-5B-A90CKMT2Echr7

104654982

+LHFPL3chr7

104546634

+
ChimerDB4UCECTCGA-A5-A7WKKMT2Echr7

104654982

+LHFPL3chr7

104546634

+
ChimerDB4UCECTCGA-AX-A2H4-01AKMT2Echr7

104717880

+LHFPL3chr7

104377122

+
ChimerDB4UCECTCGA-BG-A18C-01AKMT2Echr7

104722244

+LHFPL3chr7

104546634

+
ChimerDB4UCSTCGA-NA-A4R1KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
ChimerDB4UCSTCGA-NA-A4R1KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
ChimerDB4UCSTCGA-NA-A4R1KMT2Echr7

104730720

+LHFPL3chr7

104377122

+


Top

Fusion Gene ORF analysis for KMT2E-LHFPL3

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-3CDSENST00000480368ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
3UTR-3CDSENST00000480368ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
3UTR-3CDSENST00000480368ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
3UTR-3UTRENST00000480368ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
3UTR-3UTRENST00000480368ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
3UTR-intronENST00000480368ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
3UTR-intronENST00000480368ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
3UTR-intronENST00000480368ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5CDS-3UTRENST00000257745ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000257745ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000257745ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000257745ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000257745ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000257745ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000311117ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000334877ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5CDS-3UTRENST00000476671ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000257745ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000257745ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000257745ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000311117ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000311117ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000311117ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000334877ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000334877ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000334877ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000476671ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000476671ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5CDS-intronENST00000476671ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000311117ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000311117ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000311117ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334877ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334877ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000334877ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000334914ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000334914ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000476671ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3CDSENST00000476671ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-3CDSENST00000476671ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000311117ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000311117ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334877ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334877ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000334914ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000476671ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-3UTRENST00000476671ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
5UTR-intronENST00000311117ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000311117ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000311117ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334877ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334877ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334877ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5UTR-intronENST00000334914ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5UTR-intronENST00000334914ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
5UTR-intronENST00000334914ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
5UTR-intronENST00000476671ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000476671ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
5UTR-intronENST00000476671ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000257745ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
Frame-shiftENST00000257745ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000257745ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000257745ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
Frame-shiftENST00000311117ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000311117ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
Frame-shiftENST00000334877ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000334877ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
Frame-shiftENST00000476671ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
Frame-shiftENST00000476671ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
intron-3CDSENST00000257745ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
intron-3CDSENST00000257745ENST00000424859KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
intron-3CDSENST00000257745ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
intron-3CDSENST00000480368ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
intron-3CDSENST00000480368ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
intron-3UTRENST00000257745ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
intron-3UTRENST00000257745ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104546634

+
intron-3UTRENST00000480368ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104546634

+
intron-intronENST00000257745ENST00000401970KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
intron-intronENST00000257745ENST00000535008KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
intron-intronENST00000257745ENST00000543266KMT2Echr7

104654982

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
intron-intronENST00000480368ENST00000401970KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000424859KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000424859KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000424859KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
intron-intronENST00000480368ENST00000535008KMT2Echr7

104730720

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104707254

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104681470

+LHFPL3chr7

104485829

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104722244

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104717880

+LHFPL3chr7

104377122

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104366802

+
intron-intronENST00000480368ENST00000543266KMT2Echr7

104730720

+LHFPL3chr7

104377122

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for KMT2E-LHFPL3


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
KMT2Echr7104730720+LHFPL3chr7104377121+0.074180040.92581993
KMT2Echr7104654982+LHFPL3chr7104377121+0.0587399750.94126
KMT2Echr7104717880+LHFPL3chr7104377121+0.0452976150.9547024
KMT2Echr7104722244+LHFPL3chr7104377121+0.0012728240.99872714
KMT2Echr7104722244+LHFPL3chr7104377121+0.0012728240.99872714
KMT2Echr7104654982+LHFPL3chr7104546633+5.45E-060.9999945
KMT2Echr7104654982+LHFPL3chr7104546633+5.45E-060.9999945
KMT2Echr7104681470+LHFPL3chr7104485828+8.06E-070.99999917
KMT2Echr7104707254+LHFPL3chr7104485828+2.10E-070.99999976
KMT2Echr7104681470+LHFPL3chr7104546633+7.29E-111
KMT2Echr7104707254+LHFPL3chr7104546633+1.55E-111
KMT2Echr7104681470+LHFPL3chr7104546633+7.29E-111
KMT2Echr7104722244+LHFPL3chr7104546633+2.99E-081
KMT2Echr7104730720+LHFPL3chr7104377121+0.074180040.92581993
KMT2Echr7104654982+LHFPL3chr7104377121+0.0587399750.94126
KMT2Echr7104717880+LHFPL3chr7104377121+0.0452976150.9547024
KMT2Echr7104722244+LHFPL3chr7104377121+0.0012728240.99872714
KMT2Echr7104722244+LHFPL3chr7104377121+0.0012728240.99872714
KMT2Echr7104654982+LHFPL3chr7104546633+5.45E-060.9999945
KMT2Echr7104654982+LHFPL3chr7104546633+5.45E-060.9999945
KMT2Echr7104681470+LHFPL3chr7104485828+8.06E-070.99999917
KMT2Echr7104707254+LHFPL3chr7104485828+2.10E-070.99999976
KMT2Echr7104681470+LHFPL3chr7104546633+7.29E-111
KMT2Echr7104707254+LHFPL3chr7104546633+1.55E-111
KMT2Echr7104681470+LHFPL3chr7104546633+7.29E-111
KMT2Echr7104722244+LHFPL3chr7104546633+2.99E-081

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

Top

Fusion Protein Features for KMT2E-LHFPL3


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:104654982/:104546634)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
KMT2E

Q8IZD2

LHFPL3

Q86UP9

FUNCTION: Associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription (PubMed:23629655, PubMed:24130829, PubMed:23798402). Chromatin interaction is mediated via the binding to tri-methylated histone H3 at 'Lys-4' (H3K4me3) (PubMed:24130829, PubMed:23798402). Key regulator of hematopoiesis involved in terminal myeloid differentiation and in the regulation of hematopoietic stem cell (HSCs) self-renewal by a mechanism that involves DNA methylation (By similarity). Also acts as an important cell cycle regulator, participating in cell cycle regulatory network machinery at multiple cell cycle stages including G1/S transition, S phase progression and mitotic entry (PubMed:14718661, PubMed:18573682, PubMed:19264965, PubMed:23629655). Recruited to E2F1 responsive promoters by HCFC1 where it stimulates tri-methylation of histone H3 at 'Lys-4' and transcriptional activation and thereby facilitates G1 to S phase transition (PubMed:23629655). During myoblast differentiation, required to suppress inappropriate expression of S-phase-promoting genes and maintain expression of determination genes in quiescent cells (By similarity). {ECO:0000250|UniProtKB:Q3UG20, ECO:0000269|PubMed:14718661, ECO:0000269|PubMed:18573682, ECO:0000269|PubMed:23629655, ECO:0000269|PubMed:23798402, ECO:0000269|PubMed:24130829}.; FUNCTION: [Isoform NKp44L]: Cellular ligand for NCR2/NKp44, may play a role as a danger signal in cytotoxicity and NK-cell-mediated innate immunity. {ECO:0000269|PubMed:23958951}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for KMT2E-LHFPL3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for KMT2E-LHFPL3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for KMT2E-LHFPL3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for KMT2E-LHFPL3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource