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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:LARGE-GRAMD4 (FusionGDB2 ID:44104)

Fusion Gene Summary for LARGE-GRAMD4

check button Fusion gene summary
Fusion gene informationFusion gene name: LARGE-GRAMD4
Fusion gene ID: 44104
HgeneTgene
Gene symbol

LARGE

GRAMD4

Gene ID

9215

23151

Gene nameLARGE xylosyl- and glucuronyltransferase 1GRAM domain containing 4
SynonymsLARGE|MDC1D|MDDGA6|MDDGB6DIP
Cytomap

22q12.3

22q13.31

Type of geneprotein-codingprotein-coding
DescriptionLARGE xylosyl- and glucuronyltransferase 1acetylglucosaminyltransferase-like 1Aacetylglucosaminyltransferase-like proteinglycosyltransferase-like protein LARGE1GRAM domain-containing protein 4death-inducing-protein
Modification date2020032820200313
UniProtAcc

GYLTL1B,LARGE2

Q6IC98

Ensembl transtripts involved in fusion geneENST00000337431, ENST00000354992, 
ENST00000397394, ENST00000402320, 
ENST00000437602, ENST00000452586, 
ENST00000421232, 
ENST00000490378, 
ENST00000408031, ENST00000361034, 
ENST00000406902, 
Fusion gene scores* DoF score10 X 9 X 6=54015 X 11 X 7=1155
# samples 1316
** MAII scorelog2(13/540*10)=-2.05444778402238
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(16/1155*10)=-2.85174904141606
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LARGE [Title/Abstract] AND GRAMD4 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointLARGE(33712071)-GRAMD4(47033737), # samples:1
Anticipated loss of major functional domain due to fusion event.LARGE-GRAMD4 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
LARGE-GRAMD4 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneLARGE

GO:0035269

protein O-linked mannosylation

22223806|25138275|25279697|25279699


check buttonFusion gene breakpoints across LARGE (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across GRAMD4 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4TGCTTCGA-2G-AAGP-01ALARGEchr22

33712071

-GRAMD4chr22

47033737

+


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Fusion Gene ORF analysis for LARGE-GRAMD4

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000337431ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-3UTRENST00000354992ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-3UTRENST00000397394ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-3UTRENST00000402320ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-3UTRENST00000437602ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-3UTRENST00000452586ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000337431ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000354992ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000397394ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000402320ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000437602ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
5CDS-intronENST00000452586ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000337431ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000337431ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000354992ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000354992ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000397394ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000397394ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000402320ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000402320ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000452586ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
Frame-shiftENST00000452586ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
In-frameENST00000437602ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
In-frameENST00000437602ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
intron-3CDSENST00000421232ENST00000361034LARGEchr22

33712071

-GRAMD4chr22

47033737

+
intron-3CDSENST00000421232ENST00000406902LARGEchr22

33712071

-GRAMD4chr22

47033737

+
intron-3UTRENST00000421232ENST00000490378LARGEchr22

33712071

-GRAMD4chr22

47033737

+
intron-intronENST00000421232ENST00000408031LARGEchr22

33712071

-GRAMD4chr22

47033737

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000437602LARGEchr2233712071-ENST00000406902GRAMD4chr2247033737+57621653581722554
ENST00000437602LARGEchr2233712071-ENST00000361034GRAMD4chr2247033737+57681653581722554

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000437602ENST00000406902LARGEchr2233712071-GRAMD4chr2247033737+0.002544430.99745554
ENST00000437602ENST00000361034LARGEchr2233712071-GRAMD4chr2247033737+0.0025848740.99741507

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Fusion Genomic Features for LARGE-GRAMD4


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
LARGEchr2233712070-GRAMD4chr2247033736+2.57E-070.99999976
LARGEchr2233712070-GRAMD4chr2247033736+2.57E-070.99999976

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for LARGE-GRAMD4


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr22:33712071/chr22:47033737)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LARGE

GYLTL1B,LARGE2

GRAMD4

Q6IC98

721FUNCTION: Plays a role as a mediator of E2F1-induced apoptosis in the absence of p53/TP53 (PubMed:15565177). Plays a role as a mediator of E2F1-induced apoptosis in the absence of p53/TP53. Inhibits TLR9 response to nucelic acids and regulates TLR9-mediated innate immune response (By similarity). {ECO:0000250|UniProtKB:Q8CB44, ECO:0000269|PubMed:15565177}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-111553_95431705.0Coiled coilOntology_term=ECO:0000255
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-121653_95483757.0Coiled coilOntology_term=ECO:0000255
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-111553_95483757.0Coiled coilOntology_term=ECO:0000255
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-101453_95431705.0Coiled coilOntology_term=ECO:0000255
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-1115138_413431705.0RegionXylosyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-1216138_413483757.0RegionXylosyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-1115138_413483757.0RegionXylosyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-1014138_413431705.0RegionXylosyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-11151_10431705.0Topological domainCytoplasmic
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-12161_10483757.0Topological domainCytoplasmic
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-11151_10483757.0Topological domainCytoplasmic
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-10141_10431705.0Topological domainCytoplasmic
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-111511_31431705.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-121611_31483757.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-111511_31483757.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-101411_31431705.0TransmembraneHelical%3B Signal-anchor for type II membrane protein
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000036103401883_14354579.0Coiled coilOntology_term=ECO:0000255
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000040690211983_14354579.0Coiled coilOntology_term=ECO:0000255
TgeneGRAMD4chr22:33712071chr22:47033737ENST000004080310483_1430102.0Coiled coilOntology_term=ECO:0000255
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000361034018445_52354579.0DomainNote=GRAM
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000406902119445_52354579.0DomainNote=GRAM
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000040803104445_5230102.0DomainNote=GRAM
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000361034018240_26054579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000361034018334_35454579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000361034018356_37654579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000406902119240_26054579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000406902119334_35454579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST00000406902119356_37654579.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000040803104240_2600102.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000040803104334_3540102.0TransmembraneHelical
TgeneGRAMD4chr22:33712071chr22:47033737ENST0000040803104356_3760102.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-1115414_756431705.0RegionGlucuronyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-1216414_756483757.0RegionGlucuronyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-1115414_756483757.0RegionGlucuronyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-1014414_756431705.0RegionGlucuronyltransferase activity
HgeneLARGEchr22:33712071chr22:47033737ENST00000337431-111532_756431705.0Topological domainLumenal
HgeneLARGEchr22:33712071chr22:47033737ENST00000354992-121632_756483757.0Topological domainLumenal
HgeneLARGEchr22:33712071chr22:47033737ENST00000397394-111532_756483757.0Topological domainLumenal
HgeneLARGEchr22:33712071chr22:47033737ENST00000402320-101432_756431705.0Topological domainLumenal


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Fusion Gene Sequence for LARGE-GRAMD4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>44104_44104_1_LARGE-GRAMD4_LARGE_chr22_33712071_ENST00000437602_GRAMD4_chr22_47033737_ENST00000361034_length(transcript)=5768nt_BP=1653nt
GCAGTTAACTTATCCCGAAGCTCCAAAGCAAACGTCTTTTACTTCTTCGCCGGGGACGCTGCTGTACCACCGCTGCCTCCCTTTCGCATT
CTGCTGGGCTCGGTCAGCCGCTGAGATTAGAGAGTATTATGAGGGAGGCCGAGGACTTCATGCTCCGGACAGAGAAACGGCGCTGGGATT
AGGGATTGCCACTTCTGAGAGGATGCTGGGAATCTGCAGGGGGAGACGGAAATTCTTGGCTGCCTCGTTGAGTCTTCTCTGCATCCCAGC
CATCACCTGGATTTACCTGTTTTCTGGGAGCTTCGAAGATGGAAAGCCCGTGTCTCTGTCACCGCTGGAGTCCCAGGCACACAGCCCCAG
GTACACGGCCTCCAGCCAGCGGGAGCGCGAGAGCCTGGAGGTGCGCATGCGCGAGGTGGAGGAGGAGAACCGCGCCCTCCGCAGGCAGCT
CAGCCTGGCCCAGGGCCGAGCCCCATCCCATCGCCGAGGCAACCACTCCAAGACCTACTCCATGGAGGAGGGCACTGGAGACAGCGAGAA
CCTTCGGGCTGGCATCGTGGCAGGCAACAGCTCCGAGTGTGGGCAGCAGCCGGTCGTGGAGAAATGCGAGACAATCCACGTTGCTATTGT
CTGCGCCGGATACAATGCCAGCCGGGATGTCGTCACCCTGGTCAAATCCGTCCTGTTCCATAGACGGAACCCTCTGCACTTCCACCTTAT
TGCTGACTCCATTGCGGAGCAGATCCTGGCCACGCTCTTCCAGACCTGGATGGTGCCCGCTGTGCGTGTGGACTTCTACAATGCAGACGA
GCTCAAGTCTGAAGTTTCCTGGATCCCCAATAAACATTACTCTGGGATTTATGGTCTGATGAAGCTTGTCCTGACCAAGACTCTTCCTGC
CAACCTGGAGAGAGTCATCGTCCTTGACACGGATATCACCTTTGCCACTGACATTGCAGAGCTGTGGGCTGTGTTCCACAAGTTCAAAGG
TCAGCAAGTCCTGGGCTTGGTGGAGAACCAGAGTGACTGGTACCTTGGAAACCTGTGGAAAAATCACCGCCCATGGCCAGCCCTTGGAAG
AGGCTACAACACAGGGGTGATCCTGTTACTTCTGGATAAGCTGCGGAAGATGAAATGGGAGCAGATGTGGAGGCTGACCGCAGAGAGGGA
GCTCATGGGCATGCTCTCTACATCCTTAGCTGACCAGGATATTTTCAATGCCGTCATCAAACAAAACCCCTTCCTTGTGTACCAGCTCCC
CTGCTTCTGGAATGTGCAGCTGTCAGACCACACCCGCTCCGAGCAGTGCTACAGAGACGTGTCTGATCTAAAGGTCATTCACTGGAACTC
CCCCAAGAAGCTCCGGGTGAAGAACAAGCATGTGGAGTTTTTTCGCAACCTCTACCTGACCTTCCTGGAGTATGACGGCAATCTTCTGAG
GCGGGAACTGTTTGGCTGCCCCAGTGAGGCTGATGTCAACAGTGAAAACCTCCAGAAGCAGCTGTCTGAGCTGGACGAGGACGACCTGTG
CTATGAGTTCCGGCGAGAGCGCTTCACTGTCCACCGCACCCACCTGTACTTCCTGCACTACGAGTATGAGCCTGCAGCAGACAGCACGGA
CGTCACCCTGGTCGCTCAGCTGTCCATGGACAGGCTGGTCCAGGGACCCTCATCATGGCCACAGGAGTCCAGGACTTTAACCGGACAGAG
TTTGATCGACTGAATGAGATCAAAGGTCACCTGGAAATTGCCTTATTGGAAAAACATTTCTTACAGGAGGAGCTCCGGAAGCTGCGAGAA
GAAACCAACGCGGAGATGCTGCGGCAGGAGCTGGACCGCGAGCGGCAGCGGCGGATGGAGCTGGAGCAGAAGGTGCAGGAGGTGCTGAAG
GCCAGAACCGAGGAGCAGATGGCTCAGCAGCCCCCAAAAGGGCAGGCCCAGGCCAGCAATGGAGCAGAGCGCCGGAGCCAGGGGCTGTCC
TCGCGCCTGCAGAAGTGGTTCTACGAGCGGTTTGGGGAGTACGTGGAGGACTTCCGGTTCCAGCCCGAGGAGAACACTGTGGAGACAGAG
GAACCCCTGAGCGCCCGCAGGTTAACTGAAAATATGAGACGGCTCAAGCGCGGTGCCAAGCCGGTCACTAACTTTGTGAAGAACCTCTCT
GCCTTATCCGACTGGTACTCCGTCTACACGTCTGCCATTGCCTTCACCGTGTACATGAATGCCGTGTGGCATGGCTGGGCCATCCCATTG
TTCTTATTTCTAGCAATTCTGAGGTTATCCCTCAATTACCTCATCGCCAGGGGGTGGCGGATACAGTGGAGCATCGTGCCCGAAGTGTCT
GAGCCCGTGGAACCTCCAAAGGAAGACCTGACTGTGTCTGAGAAGTTCCAGCTGGTGCTGGACGTCGCCCAGAAAGCCCAGAACCTTTTC
GGGAAGATGGCTGACATCCTGGAGAAGATCAAGAACTTGTTCATGTGGGTCCAGCCGGAGATCACACAGAAGCTGTATGTGGCGCTCTGG
GCTGCCTTCCTGGCCTCCTGCTTCTTCCCCTACCGCCTGGTGGGGCTTGCCGTGGGACTCTATGCTGGTATCAAGTTCTTCCTCATTGAT
TTCATCTTTAAACGCTGCCCGAGGCTGCGCGCCAAGTACGACACGCCCTATATCATCTGGAGGAGTCTCCCCACCGACCCGCAGCTCAAG
GAGCGCTCCAGCGCCGCAGTCTCACGCAGGCTGCAGACGACCTCGTCACGGAGCTACGTACCCAGCGCACCGGCCGGCCTGGGTAAAGAG
GAGGACGCCGGTCGCTTCCACAGCACCAAGAAGGGCAATTTCCACGAGATCTTCAATCTGACAGAAAACGAGCGTCCGCTGGCGGTGTGC
GAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAAT
TACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGTCATCAAGCTAGTGGACATCACGGACATCCAGAAGTACAAG
GTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATTGCCGTGTCGACGCCATCCACCCAGAAACCGCTCGTGTTTGGTGCCATGGTGCAC
AGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAGCGGCAGCGTCTGGCGGGGACAGCTAGTATTGACTTGCC
CAGGACGTTGCTGGAATTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTACGATTTGGTAGTGGAAACAATTGGACATCCTCATGAG
CTTTTGCAATAATTCTCCTGGACCTGTGGTTCTATTGTGTTGACCTCTGCGTTTTATCGACCAAGAAGGGGCCAGGGCTCACAGGGACGG
GGGTGCCCCTCTCCCACAGGGCACGTCAGGTGCCTCTGAGGGCCACCCGCAGACTGGGGGAGGGGGCAGAGGCCCTCGGGGGCCCGTGGA
GAAGACACACAGGACCCCTGGCCCTGCCCTTCTCCGTTCCAGCCTGGACAGAGAAACCTCTCCAGCCACCCCAAGAGGTTCTCGCAACCT
TGTGTCCCGCTCTCCAGAGGCCAGAAGCTCGTCCACCACCAAAGCCATAGCTGAAGAGTGCGGGGCCCTTCCTCCTGGGGACAGAAAGAT
GTCGTCAAGGAGGGACATGGGGGCCTTTCACCAACCACCGAGAAACGGGCCTGGCGGCCCTCCTTCCTCTTACATGAGACCCTCCTGTGG
CATTTGCCCTTGGTGCCGGGCTGGGGCCGGGCGCAGTGACCCTGCCTGCGCTCCACACTCGCTCCACGGGAACAGAGAGGGTGAGAAGGG
CCCACCCCTCGCCTGCCCTCAGTGTCTTTGGTGGCACCTTCCTTGCTGGCCTCCAGGGCGCTCAGCACCGCGTCTGTAAGGGCCTGCCTG
CTGCTCTCGGCCTGACACGCCGGCCAGGAGGTCTGTAGCTGGGGACCAGTAAGGGCACAGGATGGTGCAGGTAAAAGCACATCTTTCTCA
CACTTTGCTCTTTGGAAGGCCCAGGAGAACATCCGCGAAGGCTGTTGGAGGTGCTCCGAGCACTGTGGCATGTCTGGCACATGGCCCCCA
GGCTGCGGTTGCCTGGGTTGGTTGGGGGAGGAAGTGGGGAGGAGTGTTCCGGGACCATGGTGGCCCAGGCTGCAGCCGCCTTTGGGCCAT
CCGAGAGGCTCTGGCAGCCCCTGTGCTTTAGGGAGCAACCGTGAGCCGAGCCCAGAGGCCTGGGCCTGCACTGCCTGCAGCCGACATGCG
ACAGCGTTCCCTCCCCCGCGTGCCTAGCCGGTGCCGGTCCGGGCACAGACCCCCCCAGCCCCCGCCCTGCCCCAGGGAAGCCTGGGCTTC
CCGGGAACAAGGTGGCATTTGTGGAGGGAGCGCCCGCAGGCCTGGTCTGCTGGGGCCGCCTGCGCTGGGCTGAAGGGAGGGAAAGGCGGC
TTGGGCCTCCTGGAAGGAGGTGGCCACCCCGCGGGCCTGCGTGTCTGCTGGGGCGGATCCCGCAGCTCCCTCAGCTTGTCCTGAGTCCCT
TGGGTGTCGTTGAGATTGTTGTTTTTTGAAGAAACAGAAGATTCTATTTTTTACAGCGAGCAAGCTGGTTTTCTTATTTTTGTATCCTTT
TTCAGATGTAATTTTTATCTTTGCTCCGATCCTCATTTGCTGGTGTGGGTGAGGGATCCGGCGGCATGGGCTGGTTTCACCCCCTTCACG
AGGGGCCGCAGAGTCACACGCTGGTGCCGGGGGTGCTTTGGGGGGAGCTGCGCCGATCACCAGATTAAGCACATGTCCTATCCCAGGCGG
TGGAGCGGAGCCCCCGTGGCTCTGGACTGCGCGGACGTTGGCGTCAGGATGACCACACGGCGGCCTTTCCCGAATGGGGACAGAACCCGC
TCTGAGCCGTGGGTCTGGCTCCTGTAGGGGACTGGCTCTCTTGGTGCACCAGGGGAGGGGGACATATCCCAGTGAACCCCACCTTGGCGC
CTGAGGCAACACAGGGTGGGCACTGACCCACCCCCAGGGGCGGCTGCAGAGGCAGTGCCCGCAGACAATGGCCACACCTCTCTCCCCAGG
GCCCGGCAGTGCCCAAGGATGGGTCCGGGGCCTCGGGGCCAATGAGCGCCTCTTCCTAGGTGCTGGGATTCAGTCCCCAAACACAGCGGG
AGGGGTCCCTGGGGCAGATGGGGCTTTACCAGCGTCGGGTGGTTTAGTTCGAGTCCCTTTTGTGGAGAAAGGGAGATGAAAACTGACCAC
GTGCCAGGTGTGGCCGAAGCCCCCAGGGAGGGCCACATTCGGGGAGCGGGGGGTCGGGGGAGGGCCACCGACTGGCTCTGCTGCCAGCAC
AGGCCCCTCCCTGGAAGTCCTCGGGAGCGGAGCGCGGATCGGCACGGGCTCTGGGCTCCCCGTGGAGAGAAGCTGTAGTTTTTACCAAAT
TGTGTACATCTGGGCAGATGTTTAATTTCTGTGACTAATCACTGAACTAGACGAATGTTAAATTTTTTATGTCTGAAGCCTGAGTCTATT
TTGGATCTGTAAATAATCATTGCCAGTGTGACTTTTGTTCAACAAAAGGATTGTACTGTATTAAGAACCGATGAAAAAAATTCTCCTGTA
ACATTTTTTTAAGAAAACTTTGTTTGTTTAAAGAAAAAGTATTGTATAAATTATAATTTTTATTTAAATAAACCTAAAATGCTTTGTGCT

>44104_44104_1_LARGE-GRAMD4_LARGE_chr22_33712071_ENST00000437602_GRAMD4_chr22_47033737_ENST00000361034_length(amino acids)=554AA_BP=531
MLYHRCLPFAFCWARSAAEIREYYEGGRGLHAPDRETALGLGIATSERMLGICRGRRKFLAASLSLLCIPAITWIYLFSGSFEDGKPVSL
SPLESQAHSPRYTASSQRERESLEVRMREVEEENRALRRQLSLAQGRAPSHRRGNHSKTYSMEEGTGDSENLRAGIVAGNSSECGQQPVV
EKCETIHVAIVCAGYNASRDVVTLVKSVLFHRRNPLHFHLIADSIAEQILATLFQTWMVPAVRVDFYNADELKSEVSWIPNKHYSGIYGL
MKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGYNTGVILLLLDKLRKMKW
EQMWRLTAERELMGMLSTSLADQDIFNAVIKQNPFLVYQLPCFWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYL
TFLEYDGNLLRRELFGCPSEADVNSENLQKQLSELDEDDLCYEFRRERFTVHRTHLYFLHYEYEPAADSTDVTLVAQLSMDRLVQGPSSW

--------------------------------------------------------------
>44104_44104_2_LARGE-GRAMD4_LARGE_chr22_33712071_ENST00000437602_GRAMD4_chr22_47033737_ENST00000406902_length(transcript)=5762nt_BP=1653nt
GCAGTTAACTTATCCCGAAGCTCCAAAGCAAACGTCTTTTACTTCTTCGCCGGGGACGCTGCTGTACCACCGCTGCCTCCCTTTCGCATT
CTGCTGGGCTCGGTCAGCCGCTGAGATTAGAGAGTATTATGAGGGAGGCCGAGGACTTCATGCTCCGGACAGAGAAACGGCGCTGGGATT
AGGGATTGCCACTTCTGAGAGGATGCTGGGAATCTGCAGGGGGAGACGGAAATTCTTGGCTGCCTCGTTGAGTCTTCTCTGCATCCCAGC
CATCACCTGGATTTACCTGTTTTCTGGGAGCTTCGAAGATGGAAAGCCCGTGTCTCTGTCACCGCTGGAGTCCCAGGCACACAGCCCCAG
GTACACGGCCTCCAGCCAGCGGGAGCGCGAGAGCCTGGAGGTGCGCATGCGCGAGGTGGAGGAGGAGAACCGCGCCCTCCGCAGGCAGCT
CAGCCTGGCCCAGGGCCGAGCCCCATCCCATCGCCGAGGCAACCACTCCAAGACCTACTCCATGGAGGAGGGCACTGGAGACAGCGAGAA
CCTTCGGGCTGGCATCGTGGCAGGCAACAGCTCCGAGTGTGGGCAGCAGCCGGTCGTGGAGAAATGCGAGACAATCCACGTTGCTATTGT
CTGCGCCGGATACAATGCCAGCCGGGATGTCGTCACCCTGGTCAAATCCGTCCTGTTCCATAGACGGAACCCTCTGCACTTCCACCTTAT
TGCTGACTCCATTGCGGAGCAGATCCTGGCCACGCTCTTCCAGACCTGGATGGTGCCCGCTGTGCGTGTGGACTTCTACAATGCAGACGA
GCTCAAGTCTGAAGTTTCCTGGATCCCCAATAAACATTACTCTGGGATTTATGGTCTGATGAAGCTTGTCCTGACCAAGACTCTTCCTGC
CAACCTGGAGAGAGTCATCGTCCTTGACACGGATATCACCTTTGCCACTGACATTGCAGAGCTGTGGGCTGTGTTCCACAAGTTCAAAGG
TCAGCAAGTCCTGGGCTTGGTGGAGAACCAGAGTGACTGGTACCTTGGAAACCTGTGGAAAAATCACCGCCCATGGCCAGCCCTTGGAAG
AGGCTACAACACAGGGGTGATCCTGTTACTTCTGGATAAGCTGCGGAAGATGAAATGGGAGCAGATGTGGAGGCTGACCGCAGAGAGGGA
GCTCATGGGCATGCTCTCTACATCCTTAGCTGACCAGGATATTTTCAATGCCGTCATCAAACAAAACCCCTTCCTTGTGTACCAGCTCCC
CTGCTTCTGGAATGTGCAGCTGTCAGACCACACCCGCTCCGAGCAGTGCTACAGAGACGTGTCTGATCTAAAGGTCATTCACTGGAACTC
CCCCAAGAAGCTCCGGGTGAAGAACAAGCATGTGGAGTTTTTTCGCAACCTCTACCTGACCTTCCTGGAGTATGACGGCAATCTTCTGAG
GCGGGAACTGTTTGGCTGCCCCAGTGAGGCTGATGTCAACAGTGAAAACCTCCAGAAGCAGCTGTCTGAGCTGGACGAGGACGACCTGTG
CTATGAGTTCCGGCGAGAGCGCTTCACTGTCCACCGCACCCACCTGTACTTCCTGCACTACGAGTATGAGCCTGCAGCAGACAGCACGGA
CGTCACCCTGGTCGCTCAGCTGTCCATGGACAGGCTGGTCCAGGGACCCTCATCATGGCCACAGGAGTCCAGGACTTTAACCGGACAGAG
TTTGATCGACTGAATGAGATCAAAGGTCACCTGGAAATTGCCTTATTGGAAAAACATTTCTTACAGGAGGAGCTCCGGAAGCTGCGAGAA
GAAACCAACGCGGAGATGCTGCGGCAGGAGCTGGACCGCGAGCGGCAGCGGCGGATGGAGCTGGAGCAGAAGGTGCAGGAGGTGCTGAAG
GCCAGAACCGAGGAGCAGATGGCTCAGCAGCCCCCAAAAGGGCAGGCCCAGGCCAGCAATGGAGCAGAGCGCCGGAGCCAGGGGCTGTCC
TCGCGCCTGCAGAAGTGGTTCTACGAGCGGTTTGGGGAGTACGTGGAGGACTTCCGGTTCCAGCCCGAGGAGAACACTGTGGAGACAGAG
GAACCCCTGAGCGCCCGCAGGTTAACTGAAAATATGAGACGGCTCAAGCGCGGTGCCAAGCCGGTCACTAACTTTGTGAAGAACCTCTCT
GCCTTATCCGACTGGTACTCCGTCTACACGTCTGCCATTGCCTTCACCGTGTACATGAATGCCGTGTGGCATGGCTGGGCCATCCCATTG
TTCTTATTTCTAGCAATTCTGAGGTTATCCCTCAATTACCTCATCGCCAGGGGGTGGCGGATACAGTGGAGCATCGTGCCCGAAGTGTCT
GAGCCCGTGGAACCTCCAAAGGAAGACCTGACTGTGTCTGAGAAGTTCCAGCTGGTGCTGGACGTCGCCCAGAAAGCCCAGAACCTTTTC
GGGAAGATGGCTGACATCCTGGAGAAGATCAAGAACTTGTTCATGTGGGTCCAGCCGGAGATCACACAGAAGCTGTATGTGGCGCTCTGG
GCTGCCTTCCTGGCCTCCTGCTTCTTCCCCTACCGCCTGGTGGGGCTTGCCGTGGGACTCTATGCTGGTATCAAGTTCTTCCTCATTGAT
TTCATCTTTAAACGCTGCCCGAGGCTGCGCGCCAAGTACGACACGCCCTATATCATCTGGAGGAGTCTCCCCACCGACCCGCAGCTCAAG
GAGCGCTCCAGCGCCGCAGTCTCACGCAGGCTGCAGACGACCTCGTCACGGAGCTACGTACCCAGCGCACCGGCCGGCCTGGGTAAAGAG
GAGGACGCCGGTCGCTTCCACAGCACCAAGAAGGGCAATTTCCACGAGATCTTCAATCTGACAGAAAACGAGCGTCCGCTGGCGGTGTGC
GAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTGCTCTACGTCACGGAGAAT
TACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGTCATCAAGCTAGTGGACATCACGGACATCCAGAAGTACAAG
GTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATTGCCGTGTCGACGCCATCCACCCAGAAACCGCTCGTGTTTGGTGCCATGGTGCAC
AGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAGCGGCAGCGTCTGGCGGGGACAGCTAGTATTGACTTGCC
CAGGACGTTGCTGGAATTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTACGATTTGGTAGTGGAAACAATTGGACATCCTCATGAG
CTTTTGCAATAATTCTCCTGGACCTGTGGTTCTATTGTGTTGACCTCTGCGTTTTATCGACCAAGAAGGGGCCAGGGCTCACAGGGACGG
GGGTGCCCCTCTCCCACAGGGCACGTCAGGTGCCTCTGAGGGCCACCCGCAGACTGGGGGAGGGGGCAGAGGCCCTCGGGGGCCCGTGGA
GAAGACACACAGGACCCCTGGCCCTGCCCTTCTCCGTTCCAGCCTGGACAGAGAAACCTCTCCAGCCACCCCAAGAGGTTCTCGCAACCT
TGTGTCCCGCTCTCCAGAGGCCAGAAGCTCGTCCACCACCAAAGCCATAGCTGAAGAGTGCGGGGCCCTTCCTCCTGGGGACAGAAAGAT
GTCGTCAAGGAGGGACATGGGGGCCTTTCACCAACCACCGAGAAACGGGCCTGGCGGCCCTCCTTCCTCTTACATGAGACCCTCCTGTGG
CATTTGCCCTTGGTGCCGGGCTGGGGCCGGGCGCAGTGACCCTGCCTGCGCTCCACACTCGCTCCACGGGAACAGAGAGGGTGAGAAGGG
CCCACCCCTCGCCTGCCCTCAGTGTCTTTGGTGGCACCTTCCTTGCTGGCCTCCAGGGCGCTCAGCACCGCGTCTGTAAGGGCCTGCCTG
CTGCTCTCGGCCTGACACGCCGGCCAGGAGGTCTGTAGCTGGGGACCAGTAAGGGCACAGGATGGTGCAGGTAAAAGCACATCTTTCTCA
CACTTTGCTCTTTGGAAGGCCCAGGAGAACATCCGCGAAGGCTGTTGGAGGTGCTCCGAGCACTGTGGCATGTCTGGCACATGGCCCCCA
GGCTGCGGTTGCCTGGGTTGGTTGGGGGAGGAAGTGGGGAGGAGTGTTCCGGGACCATGGTGGCCCAGGCTGCAGCCGCCTTTGGGCCAT
CCGAGAGGCTCTGGCAGCCCCTGTGCTTTAGGGAGCAACCGTGAGCCGAGCCCAGAGGCCTGGGCCTGCACTGCCTGCAGCCGACATGCG
ACAGCGTTCCCTCCCCCGCGTGCCTAGCCGGTGCCGGTCCGGGCACAGACCCCCCCAGCCCCCGCCCTGCCCCAGGGAAGCCTGGGCTTC
CCGGGAACAAGGTGGCATTTGTGGAGGGAGCGCCCGCAGGCCTGGTCTGCTGGGGCCGCCTGCGCTGGGCTGAAGGGAGGGAAAGGCGGC
TTGGGCCTCCTGGAAGGAGGTGGCCACCCCGCGGGCCTGCGTGTCTGCTGGGGCGGATCCCGCAGCTCCCTCAGCTTGTCCTGAGTCCCT
TGGGTGTCGTTGAGATTGTTGTTTTTTGAAGAAACAGAAGATTCTATTTTTTACAGCGAGCAAGCTGGTTTTCTTATTTTTGTATCCTTT
TTCAGATGTAATTTTTATCTTTGCTCCGATCCTCATTTGCTGGTGTGGGTGAGGGATCCGGCGGCATGGGCTGGTTTCACCCCCTTCACG
AGGGGCCGCAGAGTCACACGCTGGTGCCGGGGGTGCTTTGGGGGGAGCTGCGCCGATCACCAGATTAAGCACATGTCCTATCCCAGGCGG
TGGAGCGGAGCCCCCGTGGCTCTGGACTGCGCGGACGTTGGCGTCAGGATGACCACACGGCGGCCTTTCCCGAATGGGGACAGAACCCGC
TCTGAGCCGTGGGTCTGGCTCCTGTAGGGGACTGGCTCTCTTGGTGCACCAGGGGAGGGGGACATATCCCAGTGAACCCCACCTTGGCGC
CTGAGGCAACACAGGGTGGGCACTGACCCACCCCCAGGGGCGGCTGCAGAGGCAGTGCCCGCAGACAATGGCCACACCTCTCTCCCCAGG
GCCCGGCAGTGCCCAAGGATGGGTCCGGGGCCTCGGGGCCAATGAGCGCCTCTTCCTAGGTGCTGGGATTCAGTCCCCAAACACAGCGGG
AGGGGTCCCTGGGGCAGATGGGGCTTTACCAGCGTCGGGTGGTTTAGTTCGAGTCCCTTTTGTGGAGAAAGGGAGATGAAAACTGACCAC
GTGCCAGGTGTGGCCGAAGCCCCCAGGGAGGGCCACATTCGGGGAGCGGGGGGTCGGGGGAGGGCCACCGACTGGCTCTGCTGCCAGCAC
AGGCCCCTCCCTGGAAGTCCTCGGGAGCGGAGCGCGGATCGGCACGGGCTCTGGGCTCCCCGTGGAGAGAAGCTGTAGTTTTTACCAAAT
TGTGTACATCTGGGCAGATGTTTAATTTCTGTGACTAATCACTGAACTAGACGAATGTTAAATTTTTTATGTCTGAAGCCTGAGTCTATT
TTGGATCTGTAAATAATCATTGCCAGTGTGACTTTTGTTCAACAAAAGGATTGTACTGTATTAAGAACCGATGAAAAAAATTCTCCTGTA
ACATTTTTTTAAGAAAACTTTGTTTGTTTAAAGAAAAAGTATTGTATAAATTATAATTTTTATTTAAATAAACCTAAAATGCTTTGTGCT

>44104_44104_2_LARGE-GRAMD4_LARGE_chr22_33712071_ENST00000437602_GRAMD4_chr22_47033737_ENST00000406902_length(amino acids)=554AA_BP=531
MLYHRCLPFAFCWARSAAEIREYYEGGRGLHAPDRETALGLGIATSERMLGICRGRRKFLAASLSLLCIPAITWIYLFSGSFEDGKPVSL
SPLESQAHSPRYTASSQRERESLEVRMREVEEENRALRRQLSLAQGRAPSHRRGNHSKTYSMEEGTGDSENLRAGIVAGNSSECGQQPVV
EKCETIHVAIVCAGYNASRDVVTLVKSVLFHRRNPLHFHLIADSIAEQILATLFQTWMVPAVRVDFYNADELKSEVSWIPNKHYSGIYGL
MKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGYNTGVILLLLDKLRKMKW
EQMWRLTAERELMGMLSTSLADQDIFNAVIKQNPFLVYQLPCFWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYL
TFLEYDGNLLRRELFGCPSEADVNSENLQKQLSELDEDDLCYEFRRERFTVHRTHLYFLHYEYEPAADSTDVTLVAQLSMDRLVQGPSSW

--------------------------------------------------------------

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Fusion Gene PPI Analysis for LARGE-GRAMD4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for LARGE-GRAMD4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for LARGE-GRAMD4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource