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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:LGMN-DGCR8 (FusionGDB2 ID:44573)

Fusion Gene Summary for LGMN-DGCR8

check button Fusion gene summary
Fusion gene informationFusion gene name: LGMN-DGCR8
Fusion gene ID: 44573
HgeneTgene
Gene symbol

LGMN

DGCR8

Gene ID

5641

54487

Gene namelegumainDGCR8 microprocessor complex subunit
SynonymsAEP|LGMN1|PRSC1C22orf12|DGCRK6|Gy1|pasha
Cytomap

14q32.12

22q11.21

Type of geneprotein-codingprotein-coding
Descriptionlegumainasparaginyl endopeptidasecysteine protease 1protease, cysteine 1protease, cysteine, 1 (legumain)microprocessor complex subunit DGCR8DiGeorge syndrome critical region 8DiGeorge syndrome critical region gene 8
Modification date2020031320200320
UniProtAcc

Q99538

Q8WYQ5

Ensembl transtripts involved in fusion geneENST00000334869, ENST00000555699, 
ENST00000557434, ENST00000393218, 
ENST00000557034, 
ENST00000351989, 
ENST00000383024, ENST00000407755, 
Fusion gene scores* DoF score6 X 6 X 3=1089 X 8 X 6=432
# samples 69
** MAII scorelog2(6/108*10)=-0.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/432*10)=-2.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LGMN [Title/Abstract] AND DGCR8 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointLGMN(93180168)-DGCR8(20077499), # samples:1
Anticipated loss of major functional domain due to fusion event.LGMN-DGCR8 seems lost the major protein functional domain in Hgene partner, which is a cell metabolism gene due to the frame-shifted ORF.
LGMN-DGCR8 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
LGMN-DGCR8 seems lost the major protein functional domain in Tgene partner, which is a CGC due to the frame-shifted ORF.
LGMN-DGCR8 seems lost the major protein functional domain in Tgene partner, which is a essential gene due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneLGMN

GO:0010447

response to acidic pH

18374643

HgeneLGMN

GO:0035729

cellular response to hepatocyte growth factor stimulus

21237226

HgeneLGMN

GO:0071277

cellular response to calcium ion

21237226

HgeneLGMN

GO:0090026

positive regulation of monocyte chemotaxis

18377911

HgeneLGMN

GO:0097202

activation of cysteine-type endopeptidase activity

9821970|18374643

HgeneLGMN

GO:0097264

self proteolysis

9821970|18374643

HgeneLGMN

GO:1904646

cellular response to amyloid-beta

25326800

HgeneLGMN

GO:2001028

positive regulation of endothelial cell chemotaxis

18377911

TgeneDGCR8

GO:0031053

primary miRNA processing

15531877|15574589|24449907|24910438


check buttonFusion gene breakpoints across LGMN (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across DGCR8 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-D7-6820-01ALGMNchr14

93180168

-DGCR8chr22

20077499

+


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Fusion Gene ORF analysis for LGMN-DGCR8

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000334869ENST00000351989LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000334869ENST00000383024LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000334869ENST00000407755LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000555699ENST00000351989LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000555699ENST00000383024LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000555699ENST00000407755LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000557434ENST00000351989LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000557434ENST00000383024LGMNchr14

93180168

-DGCR8chr22

20077499

+
Frame-shiftENST00000557434ENST00000407755LGMNchr14

93180168

-DGCR8chr22

20077499

+
In-frameENST00000393218ENST00000351989LGMNchr14

93180168

-DGCR8chr22

20077499

+
In-frameENST00000393218ENST00000383024LGMNchr14

93180168

-DGCR8chr22

20077499

+
In-frameENST00000393218ENST00000407755LGMNchr14

93180168

-DGCR8chr22

20077499

+
intron-3CDSENST00000557034ENST00000351989LGMNchr14

93180168

-DGCR8chr22

20077499

+
intron-3CDSENST00000557034ENST00000383024LGMNchr14

93180168

-DGCR8chr22

20077499

+
intron-3CDSENST00000557034ENST00000407755LGMNchr14

93180168

-DGCR8chr22

20077499

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)
ENST00000393218LGMNchr1493180168-ENST00000351989DGCR8chr2220077499+39438813382179613
ENST00000393218LGMNchr1493180168-ENST00000383024DGCR8chr2220077499+38488813382080580
ENST00000393218LGMNchr1493180168-ENST00000407755DGCR8chr2220077499+38458813382080580

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000393218ENST00000351989LGMNchr1493180168-DGCR8chr2220077499+0.0019046410.99809533
ENST00000393218ENST00000383024LGMNchr1493180168-DGCR8chr2220077499+0.0020467080.9979533
ENST00000393218ENST00000407755LGMNchr1493180168-DGCR8chr2220077499+0.0020597750.99794024

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Fusion Genomic Features for LGMN-DGCR8


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)
LGMNchr1493180167-DGCR8chr2220077498+0.0321134030.96788657
LGMNchr1493180167-DGCR8chr2220077498+0.0321134030.96788657

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for LGMN-DGCR8


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr14:93180168/chr22:20077499)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LGMN

Q99538

DGCR8

Q8WYQ5

FUNCTION: Has a strict specificity for hydrolysis of asparaginyl bonds. Can also cleave aspartyl bonds slowly, especially under acidic conditions. Required for normal lysosomal protein degradation in renal proximal tubules. Required for normal degradation of internalized EGFR. Plays a role in the regulation of cell proliferation via its role in EGFR degradation (By similarity). May be involved in the processing of proteins for MHC class II antigen presentation in the lysosomal/endosomal system. {ECO:0000250, ECO:0000269|PubMed:23776206}.FUNCTION: Component of the microprocessor complex that acts as a RNA- and heme-binding protein that is involved in the initial step of microRNA (miRNA) biogenesis. Component of the microprocessor complex that is required to process primary miRNA transcripts (pri-miRNAs) to release precursor miRNA (pre-miRNA) in the nucleus. Within the microprocessor complex, DGCR8 function as a molecular anchor necessary for the recognition of pri-miRNA at dsRNA-ssRNA junction and directs DROSHA to cleave 11 bp away form the junction to release hairpin-shaped pre-miRNAs that are subsequently cut by the cytoplasmic DICER to generate mature miRNAs (PubMed:26027739, PubMed:26748718). The heme-bound DGCR8 dimer binds pri-miRNAs as a cooperative trimer (of dimers) and is active in triggering pri-miRNA cleavage, whereas the heme-free DGCR8 monomer binds pri-miRNAs as a dimer and is much less active. Both double-stranded and single-stranded regions of a pri-miRNA are required for its binding (PubMed:15531877, PubMed:15574589, PubMed:15589161, PubMed:16751099, PubMed:16906129, PubMed:16963499, PubMed:17159994). Specifically recognizes and binds N6-methyladenosine (m6A)-containing pri-miRNAs, a modification required for pri-miRNAs processing (PubMed:25799998). Involved in the silencing of embryonic stem cell self-renewal (By similarity). {ECO:0000250|UniProtKB:Q9EQM6, ECO:0000269|PubMed:15531877, ECO:0000269|PubMed:15574589, ECO:0000269|PubMed:15589161, ECO:0000269|PubMed:16751099, ECO:0000269|PubMed:16906129, ECO:0000269|PubMed:16963499, ECO:0000269|PubMed:17159994, ECO:0000269|PubMed:25799998, ECO:0000269|PubMed:26027739, ECO:0000269|PubMed:26748718}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneDGCR8chr14:93180168chr22:20077499ENST00000351989314511_578341774.0DomainDRBM 1
TgeneDGCR8chr14:93180168chr22:20077499ENST00000351989314620_685341774.0DomainDRBM 2
TgeneDGCR8chr14:93180168chr22:20077499ENST00000383024313511_578341741.0DomainDRBM 1
TgeneDGCR8chr14:93180168chr22:20077499ENST00000383024313620_685341741.0DomainDRBM 2
TgeneDGCR8chr14:93180168chr22:20077499ENST00000407755212511_578341741.0DomainDRBM 1
TgeneDGCR8chr14:93180168chr22:20077499ENST00000407755212620_685341741.0DomainDRBM 2

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneDGCR8chr14:93180168chr22:20077499ENST00000351989314301_334341774.0DomainWW
TgeneDGCR8chr14:93180168chr22:20077499ENST00000383024313301_334341741.0DomainWW
TgeneDGCR8chr14:93180168chr22:20077499ENST00000407755212301_334341741.0DomainWW
TgeneDGCR8chr14:93180168chr22:20077499ENST000003519893141_275341774.0RegionNote=Necessary for nuclear localization and retention
TgeneDGCR8chr14:93180168chr22:20077499ENST00000351989314276_751341774.0RegionNote=Necessary for heme-binding and pri-miRNA processing
TgeneDGCR8chr14:93180168chr22:20077499ENST000003830243131_275341741.0RegionNote=Necessary for nuclear localization and retention
TgeneDGCR8chr14:93180168chr22:20077499ENST00000383024313276_751341741.0RegionNote=Necessary for heme-binding and pri-miRNA processing
TgeneDGCR8chr14:93180168chr22:20077499ENST000004077552121_275341741.0RegionNote=Necessary for nuclear localization and retention
TgeneDGCR8chr14:93180168chr22:20077499ENST00000407755212276_751341741.0RegionNote=Necessary for heme-binding and pri-miRNA processing


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Fusion Gene Sequence for LGMN-DGCR8


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>44573_44573_1_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000351989_length(transcript)=3943nt_BP=881nt
CCAGTCACCGCGGCACAGTGGCCCTTAAGCGAGGAGCGGCGGCGCCCGCAGCAATCACAGCAGTGCCGACGTCGTGGGTGTTTGGTGTGA
GGCTGCGAGCCGCCGCGAGTTCTCACGGTCCCGCCGGCGCCACCACCGCGGTCACTCACCGCCGCCGCCGCCACCACTGCCACCACGGTC
GCCTGCCACAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCA
ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTCTGCAATTGAACTCCAAGGTGCAGAATGGTTTGGAAAGTAGCTGTAT
TCCTCAGTGTGGCCCTGGGCATTGGTGCCGTTCCTATAGATGATCCTGAAGATGGAGGCAAGCACTGGGTGGTGATCGTGGCAGGTTCAA
ATGGCTGGTATAATTATAGGCACCAGGCAGACGCGTGCCATGCCTACCAGATCATTCACCGCAATGGGATTCCTGACGAACAGATCGTTG
TGATGATGTACGATGACATTGCTTACTCTGAAGACAATCCCACTCCAGGAATTGTGATCAACAGGCCCAATGGCACAGATGTCTATCAGG
GAGTCCCGAAGGACTACACTGGAGAGGATGTTACCCCACAAAATTTCCTTGCTGTGTTGAGAGGCGATGCAGAAGCAGTGAAGGGCATAG
GATCCGGCAAAGTCCTGAAGAGTGGCCCCCAGGATCACGTGTTCATTTACTTCACTGACCATGGATCTACTGGAATACTGGTTTTTCCCA
ATGAAGATCTTCATGTAAAGGACCTGAATGAGACCATCCATTACATGTACAAACACAAAATGTACCGAAAGAAACACGACCCTCCTCTGA
GTAGCATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGGGGATGTGTCCC
CCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCCCTGGATGAGCCTGACTCTATGGGTGCTGACCCGGGGCCCCCGGACGAGA
AAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGTGAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCG
AGGAATTTCGAAGCTACCTGGAGAAGCGTTTTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCA
ATCGGGAAATGAAGCGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGCAC
CCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGCGTGTCCTCAAGGTCCGCC
CTGTCTATAATTTCTTTGAATGTGAGAACCCAAGTGAGCCTTTTGGTGCCTCGGTGACCATTGATGGTGTGACTTACGGATCTGGAACTG
CAAGCAGCAAAAAACTTGCGAAGAATAAAGCTGCCCGAGCTACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGA
AGCCCAAAGACAGTGAAGAACTCGAGTATTTTAACCACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGT
TGTCTCCATATCAGATCCTCCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAAAA
ACCAGAAGAGTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTGGAAAGCAGTTAGCCTCAC
AGAAGATCCTTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGCATGTATGGCCGTGAGAGCAGCAAGATGGTCAAGC
AGGAGACATCGGACAAGAGTGTGATTGAGCTGCAGCAGTATGCCAAGAAGAACAAGCCCAACCTGCACATCCTCAGCAAGCTCCAAGAGG
AGATGAAGAGGCTAGCTGAGGAAAGGGAGGAGACTCGAAAGAAGCCCAAGATGTCCATTGTGGCGTCCGCCCAGCCTGGCGGTGAGCCCC
TGTGCACCGTGGACGTGTGAGGGAGGTGGCACGGGCCAGGGCGCGGGGGCCGCCAGCCGCACTTCTGAGGAGACCAGCAGTCATGCATCG
TGCACCACAGTGTCAGGCCTCCAACCCACGCTCCTTCCCTGTGGCCAACCTGTGGGCCCGGCCTTAGGGTGGAGGCTTTAGTGTACAGGG
ACAGCCATGGCCACACAGCACACATGTGGAGCAGCGGCTCTCCCTGGAAAGCTCCAGGCCTGAATGGATGGACTCAGCGACTGCACCAGT
GGCAGCTGGTGACTGTGGACAGTGGTGGACCCTGCTTCTGTGCACCTGCTGCAGGCTCTTTTTATGAAGGCTTTCATGAATTTTAGTATG
TAATACGCACTGACGACACATGATGCTTGGATGACAGATGAGAGGGGATGGCTGAGTCCTGTGGCTGGCCCGTGATGCCAGGTGGCCCAT
GTGCCCAGGGCGCCTGCAGGGCTGCTACAGGGACCTGGTCAGGAGGTGCACATGGTGCCCTGCCCTCACCCACCCTCTGTGTTTCCCCTT
CTTTGAAAAGGTAGAAGAGAAAGGAATATTTTAAACCTTTTTGGCTTAAACAGAATTTTAGCATCAGAACTAGCTTTCTGGGATTGGAGG
CAAACCATCAAGGTGGTCCCTCTCCAGTCTGGACACGATGCCAGCAAGGATGACGTCCTGCCACCTCCTGGAGTTACCCTGGCCTCCTAG
GGTCCCTTTTTCTGATGAAGTCTTAATTCCCTAAAAGCGCCTCTTTGGACACTGAGGCCCTCTCTGCCTTTCCTGGCCTCCGGCAACAGT
TTTTTACAAAGATTTTTTGCAGTCGAGTCCATATGTCCACCCATTGATTTTTAAAGCTTTTGTGATATTTTAGCATTTTGAAAGACTTTC
ACAGTGAGAGTAGAAGGTAGATTTGGAATCATGCATTTTAGCAAGTGGACTTGTTGAAACAGGAAGCAAGGGCCTTCAGTGTAGCCCATT
CTTGATCCAGAGCTGTTGCCTGTGACAGCGGTTTCTCTGGATGTCAAAGGCAGCTGCCTGGTGCCCAGCTTGCTTCTCGACTGGTGGCCC
CTATGGGTGGGTGTGCGATGGAAATGTGTTCCTGCCGGAGTCTGAGGCACCAGGGTGTGCTCAAAGGCTGGCCCTGGTGGTGGACTGGCA
CCTGTGCAGAGTGCCGTGTGCTTGTGGTGCGCCATCTGAAGCAAGAGTCCAGCGTTCTGCCGTGTCTGTCCCCCACCATGCCCCCTACAG
GCGGTACTGATGGCGCTTTTTTTTTTTTTTCTGTCAGGAAAACAATGTTGGCCTGTGGGCCGCCCACAACATATCCTTCCCTCACTACCT
GTGTGACCAAGGTTGGCTTCTGTTGACCTTTAAAAAAGAAACCCTCAACTCAAATTGCTATAATTAGACACTTGCTTCTGTCTTGCCTCC
TGTCTGCAGCTGTGAATAGTCATTTGACTGTGACTGTTGCCCTTAGCCAGCCAGATGCGCCTGTGAACCAAAGCTTCGTGCACATGTGTT
CCCCTAAAGGTTGGGGAGCCTCGCTGTGTCTTGCTGTTCCCAGGCACCACCACAGCAGGTGCTGCCATACTCTTGTGGTCTCTGTGCGCC
CCCCCCCCCCCCCCACCCGTCTGCCAAGCATGGGTATGAATCGTGCACACAGCCATGCTTCAAGGCCGGGGCAGGGGAGCCTGTGCTGAT

>44573_44573_1_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000351989_length(amino acids)=613AA_BP=181
MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRP
NGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR
KKHDPPLSSIPCLHYKKMKDNEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGALGQVKAKVEVC
KDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESERPILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYM
QRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYE
LTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGR

--------------------------------------------------------------
>44573_44573_2_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000383024_length(transcript)=3848nt_BP=881nt
CCAGTCACCGCGGCACAGTGGCCCTTAAGCGAGGAGCGGCGGCGCCCGCAGCAATCACAGCAGTGCCGACGTCGTGGGTGTTTGGTGTGA
GGCTGCGAGCCGCCGCGAGTTCTCACGGTCCCGCCGGCGCCACCACCGCGGTCACTCACCGCCGCCGCCGCCACCACTGCCACCACGGTC
GCCTGCCACAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCA
ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTCTGCAATTGAACTCCAAGGTGCAGAATGGTTTGGAAAGTAGCTGTAT
TCCTCAGTGTGGCCCTGGGCATTGGTGCCGTTCCTATAGATGATCCTGAAGATGGAGGCAAGCACTGGGTGGTGATCGTGGCAGGTTCAA
ATGGCTGGTATAATTATAGGCACCAGGCAGACGCGTGCCATGCCTACCAGATCATTCACCGCAATGGGATTCCTGACGAACAGATCGTTG
TGATGATGTACGATGACATTGCTTACTCTGAAGACAATCCCACTCCAGGAATTGTGATCAACAGGCCCAATGGCACAGATGTCTATCAGG
GAGTCCCGAAGGACTACACTGGAGAGGATGTTACCCCACAAAATTTCCTTGCTGTGTTGAGAGGCGATGCAGAAGCAGTGAAGGGCATAG
GATCCGGCAAAGTCCTGAAGAGTGGCCCCCAGGATCACGTGTTCATTTACTTCACTGACCATGGATCTACTGGAATACTGGTTTTTCCCA
ATGAAGATCTTCATGTAAAGGACCTGAATGAGACCATCCATTACATGTACAAACACAAAATGTACCGAAAGAAACACGACCCTCCTCTGA
GTAGCATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGGGGATGTGTCCC
CCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCCCTGGATGAGCCTGACTCTATGGGTGCTGACCCGGGGCCCCCGGACGAGA
AAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGTGAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCG
AGGAATTTCGAAGCTACCTGGAGAAGCGTTTTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCA
ATCGGGAAATGAAGCGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGCAC
CCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGCGTGTCCTCAAGGTCCGCC
CTGTCTATAATTTCTTTGAATGTGCCCGAGCTACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAG
ACAGTGAAGAACTCGAGTATTTTAACCACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCAT
ATCAGATCCTCCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAAAAACCAGAAGA
GTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTGGAAAGCAGTTAGCCTCACAGAAGATCC
TTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGCATGTATGGCCGTGAGAGCAGCAAGATGGTCAAGCAGGAGACAT
CGGACAAGAGTGTGATTGAGCTGCAGCAGTATGCCAAGAAGAACAAGCCCAACCTGCACATCCTCAGCAAGCTCCAAGAGGAGATGAAGA
GGCTAGCTGAGGAAAGGGAGGAGACTCGAAAGAAGCCCAAGATGTCCATTGTGGCGTCCGCCCAGCCTGGCGGTGAGCCCCTGTGCACCG
TGGACGTGTGAGGGAGGTGGCACGGGCCAGGGCGCGGGGGCCGCCAGCCGCACTTCTGAGGAGACCAGCAGTCATGCATCGTGCACCACA
GTGTCAGGCCTCCAACCCACGCTCCTTCCCTGTGGCCAACCTGTGGGCCCGGCCTTAGGGTGGAGGCTTTAGTGTACAGGGACAGCCATG
GCCACACAGCACACATGTGGAGCAGCGGCTCTCCCTGGAAAGCTCCAGGCCTGAATGGATGGACTCAGCGACTGCACCAGTGGCAGCTGG
TGACTGTGGACAGTGGTGGACCCTGCTTCTGTGCACCTGCTGCAGGCTCTTTTTATGAAGGCTTTCATGAATTTTAGTATGTAATACGCA
CTGACGACACATGATGCTTGGATGACAGATGAGAGGGGATGGCTGAGTCCTGTGGCTGGCCCGTGATGCCAGGTGGCCCATGTGCCCAGG
GCGCCTGCAGGGCTGCTACAGGGACCTGGTCAGGAGGTGCACATGGTGCCCTGCCCTCACCCACCCTCTGTGTTTCCCCTTCTTTGAAAA
GGTAGAAGAGAAAGGAATATTTTAAACCTTTTTGGCTTAAACAGAATTTTAGCATCAGAACTAGCTTTCTGGGATTGGAGGCAAACCATC
AAGGTGGTCCCTCTCCAGTCTGGACACGATGCCAGCAAGGATGACGTCCTGCCACCTCCTGGAGTTACCCTGGCCTCCTAGGGTCCCTTT
TTCTGATGAAGTCTTAATTCCCTAAAAGCGCCTCTTTGGACACTGAGGCCCTCTCTGCCTTTCCTGGCCTCCGGCAACAGTTTTTTACAA
AGATTTTTTGCAGTCGAGTCCATATGTCCACCCATTGATTTTTAAAGCTTTTGTGATATTTTAGCATTTTGAAAGACTTTCACAGTGAGA
GTAGAAGGTAGATTTGGAATCATGCATTTTAGCAAGTGGACTTGTTGAAACAGGAAGCAAGGGCCTTCAGTGTAGCCCATTCTTGATCCA
GAGCTGTTGCCTGTGACAGCGGTTTCTCTGGATGTCAAAGGCAGCTGCCTGGTGCCCAGCTTGCTTCTCGACTGGTGGCCCCTATGGGTG
GGTGTGCGATGGAAATGTGTTCCTGCCGGAGTCTGAGGCACCAGGGTGTGCTCAAAGGCTGGCCCTGGTGGTGGACTGGCACCTGTGCAG
AGTGCCGTGTGCTTGTGGTGCGCCATCTGAAGCAAGAGTCCAGCGTTCTGCCGTGTCTGTCCCCCACCATGCCCCCTACAGGCGGTACTG
ATGGCGCTTTTTTTTTTTTTTCTGTCAGGAAAACAATGTTGGCCTGTGGGCCGCCCACAACATATCCTTCCCTCACTACCTGTGTGACCA
AGGTTGGCTTCTGTTGACCTTTAAAAAAGAAACCCTCAACTCAAATTGCTATAATTAGACACTTGCTTCTGTCTTGCCTCCTGTCTGCAG
CTGTGAATAGTCATTTGACTGTGACTGTTGCCCTTAGCCAGCCAGATGCGCCTGTGAACCAAAGCTTCGTGCACATGTGTTCCCCTAAAG
GTTGGGGAGCCTCGCTGTGTCTTGCTGTTCCCAGGCACCACCACAGCAGGTGCTGCCATACTCTTGTGGTCTCTGTGCGCCCCCCCCCCC
CCCCCACCCGTCTGCCAAGCATGGGTATGAATCGTGCACACAGCCATGCTTCAAGGCCGGGGCAGGGGAGCCTGTGCTGATGCCATCCAG

>44573_44573_2_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000383024_length(amino acids)=580AA_BP=181
MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRP
NGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR
KKHDPPLSSIPCLHYKKMKDNEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGALGQVKAKVEVC
KDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESERPILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYM
QRVLKVRPVYNFFECARATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEV
VPGKNQKSEYVMACGKHTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQYAKKNKPNLHILS

--------------------------------------------------------------
>44573_44573_3_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000407755_length(transcript)=3845nt_BP=881nt
CCAGTCACCGCGGCACAGTGGCCCTTAAGCGAGGAGCGGCGGCGCCCGCAGCAATCACAGCAGTGCCGACGTCGTGGGTGTTTGGTGTGA
GGCTGCGAGCCGCCGCGAGTTCTCACGGTCCCGCCGGCGCCACCACCGCGGTCACTCACCGCCGCCGCCGCCACCACTGCCACCACGGTC
GCCTGCCACAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCA
ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTCTGCAATTGAACTCCAAGGTGCAGAATGGTTTGGAAAGTAGCTGTAT
TCCTCAGTGTGGCCCTGGGCATTGGTGCCGTTCCTATAGATGATCCTGAAGATGGAGGCAAGCACTGGGTGGTGATCGTGGCAGGTTCAA
ATGGCTGGTATAATTATAGGCACCAGGCAGACGCGTGCCATGCCTACCAGATCATTCACCGCAATGGGATTCCTGACGAACAGATCGTTG
TGATGATGTACGATGACATTGCTTACTCTGAAGACAATCCCACTCCAGGAATTGTGATCAACAGGCCCAATGGCACAGATGTCTATCAGG
GAGTCCCGAAGGACTACACTGGAGAGGATGTTACCCCACAAAATTTCCTTGCTGTGTTGAGAGGCGATGCAGAAGCAGTGAAGGGCATAG
GATCCGGCAAAGTCCTGAAGAGTGGCCCCCAGGATCACGTGTTCATTTACTTCACTGACCATGGATCTACTGGAATACTGGTTTTTCCCA
ATGAAGATCTTCATGTAAAGGACCTGAATGAGACCATCCATTACATGTACAAACACAAAATGTACCGAAAGAAACACGACCCTCCTCTGA
GTAGCATCCCTTGTCTGCATTATAAGAAAATGAAGGACAACGAGGAACGGGAGCAAAGCAGTGACCTCACCCCTAGTGGGGATGTGTCCC
CCGTCAAGCCCCTGAGCCGATCTGCAGAGCTGGAGTTTCCCCTGGATGAGCCTGACTCTATGGGTGCTGACCCGGGGCCCCCGGACGAGA
AAGACCCACTAGGGGCTGAGGCAGCCCCTGGGGCCCTGGGGCAGGTGAAGGCCAAAGTCGAGGTGTGCAAAGATGAATCCGTTGATCTCG
AGGAATTTCGAAGCTACCTGGAGAAGCGTTTTGACTTTGAGCAAGTTACTGTGAAAAAATTCAGGACTTGGGCTGAGCGGCGGCAATTCA
ATCGGGAAATGAAGCGGAAGCAGGCGGAGTCCGAGAGGCCCATCTTGCCAGCCAATCAGAAGCTCATTACTTTATCAGTGCAAGATGCAC
CCACAAAGAAAGAGTTTGTTATTAACCCCAACGGGAAATCCGAGGTCTGCATCCTGCACGAGTACATGCAGCGTGTCCTCAAGGTCCGCC
CTGTCTATAATTTCTTTGAATGTGCCCGAGCTACACTGGAAATCCTCATCCCTGACTTTGTTAAACAGACCTCTGAAGAGAAGCCCAAAG
ACAGTGAAGAACTCGAGTATTTTAACCACATCAGCATCGAGGACTCGCGGGTCTACGAGCTGACCAGCAAGGCTGGGCTGTTGTCTCCAT
ATCAGATCCTCCACGAGTGCCTTAAAAGAAACCATGGGATGGGTGACACGTCTATCAAGTTTGAAGTGGTTCCTGGGAAAAACCAGAAGA
GTGAATACGTCATGGCGTGTGGCAAGCACACAGTGCGCGGGTGGTGTAAGAACAAGAGAGTTGGAAAGCAGTTAGCCTCACAGAAGATCC
TTCAGCTGCTGCACCCACATGTCAAGAACTGGGGGTCTTTACTGCGCATGTATGGCCGTGAGAGCAGCAAGATGGTCAAGCAGGAGACAT
CGGACAAGAGTGTGATTGAGCTGCAGCAGTATGCCAAGAAGAACAAGCCCAACCTGCACATCCTCAGCAAGCTCCAAGAGGAGATGAAGA
GGCTAGCTGAGGAAAGGGAGGAGACTCGAAAGAAGCCCAAGATGTCCATTGTGGCGTCCGCCCAGCCTGGCGGTGAGCCCCTGTGCACCG
TGGACGTGTGAGGGAGGTGGCACGGGCCAGGGCGCGGGGGCCGCCAGCCGCACTTCTGAGGAGACCAGCAGTCATGCATCGTGCACCACA
GTGTCAGGCCTCCAACCCACGCTCCTTCCCTGTGGCCAACCTGTGGGCCCGGCCTTAGGGTGGAGGCTTTAGTGTACAGGGACAGCCATG
GCCACACAGCACACATGTGGAGCAGCGGCTCTCCCTGGAAAGCTCCAGGCCTGAATGGATGGACTCAGCGACTGCACCAGTGGCAGCTGG
TGACTGTGGACAGTGGTGGACCCTGCTTCTGTGCACCTGCTGCAGGCTCTTTTTATGAAGGCTTTCATGAATTTTAGTATGTAATACGCA
CTGACGACACATGATGCTTGGATGACAGATGAGAGGGGATGGCTGAGTCCTGTGGCTGGCCCGTGATGCCAGGTGGCCCATGTGCCCAGG
GCGCCTGCAGGGCTGCTACAGGGACCTGGTCAGGAGGTGCACATGGTGCCCTGCCCTCACCCACCCTCTGTGTTTCCCCTTCTTTGAAAA
GGTAGAAGAGAAAGGAATATTTTAAACCTTTTTGGCTTAAACAGAATTTTAGCATCAGAACTAGCTTTCTGGGATTGGAGGCAAACCATC
AAGGTGGTCCCTCTCCAGTCTGGACACGATGCCAGCAAGGATGACGTCCTGCCACCTCCTGGAGTTACCCTGGCCTCCTAGGGTCCCTTT
TTCTGATGAAGTCTTAATTCCCTAAAAGCGCCTCTTTGGACACTGAGGCCCTCTCTGCCTTTCCTGGCCTCCGGCAACAGTTTTTTACAA
AGATTTTTTGCAGTCGAGTCCATATGTCCACCCATTGATTTTTAAAGCTTTTGTGATATTTTAGCATTTTGAAAGACTTTCACAGTGAGA
GTAGAAGGTAGATTTGGAATCATGCATTTTAGCAAGTGGACTTGTTGAAACAGGAAGCAAGGGCCTTCAGTGTAGCCCATTCTTGATCCA
GAGCTGTTGCCTGTGACAGCGGTTTCTCTGGATGTCAAAGGCAGCTGCCTGGTGCCCAGCTTGCTTCTCGACTGGTGGCCCCTATGGGTG
GGTGTGCGATGGAAATGTGTTCCTGCCGGAGTCTGAGGCACCAGGGTGTGCTCAAAGGCTGGCCCTGGTGGTGGACTGGCACCTGTGCAG
AGTGCCGTGTGCTTGTGGTGCGCCATCTGAAGCAAGAGTCCAGCGTTCTGCCGTGTCTGTCCCCCACCATGCCCCCTACAGGCGGTACTG
ATGGCGCTTTTTTTTTTTTTTCTGTCAGGAAAACAATGTTGGCCTGTGGGCCGCCCACAACATATCCTTCCCTCACTACCTGTGTGACCA
AGGTTGGCTTCTGTTGACCTTTAAAAAAGAAACCCTCAACTCAAATTGCTATAATTAGACACTTGCTTCTGTCTTGCCTCCTGTCTGCAG
CTGTGAATAGTCATTTGACTGTGACTGTTGCCCTTAGCCAGCCAGATGCGCCTGTGAACCAAAGCTTCGTGCACATGTGTTCCCCTAAAG
GTTGGGGAGCCTCGCTGTGTCTTGCTGTTCCCAGGCACCACCACAGCAGGTGCTGCCATACTCTTGTGGTCTCTGTGCGCCCCCCCCCCC
CCCCCACCCGTCTGCCAAGCATGGGTATGAATCGTGCACACAGCCATGCTTCAAGGCCGGGGCAGGGGAGCCTGTGCTGATGCCATCCAG

>44573_44573_3_LGMN-DGCR8_LGMN_chr14_93180168_ENST00000393218_DGCR8_chr22_20077499_ENST00000407755_length(amino acids)=580AA_BP=181
MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRP
NGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR
KKHDPPLSSIPCLHYKKMKDNEEREQSSDLTPSGDVSPVKPLSRSAELEFPLDEPDSMGADPGPPDEKDPLGAEAAPGALGQVKAKVEVC
KDESVDLEEFRSYLEKRFDFEQVTVKKFRTWAERRQFNREMKRKQAESERPILPANQKLITLSVQDAPTKKEFVINPNGKSEVCILHEYM
QRVLKVRPVYNFFECARATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEV
VPGKNQKSEYVMACGKHTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQYAKKNKPNLHILS

--------------------------------------------------------------

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Fusion Gene PPI Analysis for LGMN-DGCR8


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with
TgeneDGCR8chr14:93180168chr22:20077499ENST00000351989314701_773341.0774.0DROSHA
TgeneDGCR8chr14:93180168chr22:20077499ENST00000383024313701_773341.0741.0DROSHA
TgeneDGCR8chr14:93180168chr22:20077499ENST00000407755212701_773341.0741.0DROSHA


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for LGMN-DGCR8


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for LGMN-DGCR8


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource