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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:LMNA-PPP1R18 (FusionGDB2 ID:45794)

Fusion Gene Summary for LMNA-PPP1R18

check button Fusion gene summary
Fusion gene informationFusion gene name: LMNA-PPP1R18
Fusion gene ID: 45794
HgeneTgene
Gene symbol

LMNA

PPP1R18

Gene ID

4000

170954

Gene namelamin A/Cprotein phosphatase 1 regulatory subunit 18
SynonymsCDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1HKMT1098|KIAA1949
Cytomap

1q22

6p21.33

Type of geneprotein-codingprotein-coding
Descriptionlamin70 kDa laminepididymis secretory sperm binding proteinlamin A/C-like 1mandibuloacral dysplasia type Aprelamin-A/Crenal carcinoma antigen NY-REN-32phostensinprotein phosphatase 1 F-actin cytoskeleton targeting subunit
Modification date2020032920200313
UniProtAcc

P02545

Q6NYC8

Ensembl transtripts involved in fusion geneENST00000347559, ENST00000361308, 
ENST00000368297, ENST00000368299, 
ENST00000368300, ENST00000368301, 
ENST00000392353, ENST00000448611, 
ENST00000473598, ENST00000496738, 
ENST00000274853, ENST00000399199, 
ENST00000488324, ENST00000383573, 
ENST00000400554, ENST00000412189, 
ENST00000435006, ENST00000435929, 
ENST00000437121, ENST00000438815, 
ENST00000438945, ENST00000443517, 
ENST00000444206, ENST00000449705, 
ENST00000451544, ENST00000455935, 
ENST00000465704, ENST00000472334, 
ENST00000487859, ENST00000491628, 
ENST00000492746, ENST00000493833, 
ENST00000498031, ENST00000548255, 
ENST00000550073, ENST00000551034, 
ENST00000551049, ENST00000551784, 
ENST00000552716, 
Fusion gene scores* DoF score16 X 16 X 9=23047 X 8 X 5=280
# samples 219
** MAII scorelog2(21/2304*10)=-3.45567948377619
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(9/280*10)=-1.63742992061529
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LMNA [Title/Abstract] AND PPP1R18 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointLMNA(156076614)-PPP1R18(30647166), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneLMNA

GO:0090343

positive regulation of cell aging

20458013


check buttonFusion gene breakpoints across LMNA (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PPP1R18 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4STADTCGA-CD-8531-01ALMNAchr1

156076614

+PPP1R18chr6

30647166

-


Top

Fusion Gene ORF analysis for LMNA-PPP1R18

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-5UTRENST00000347559ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000347559ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000347559ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000361308ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000361308ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000361308ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368297ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368297ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368297ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368299ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368299ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368299ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368300ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368300ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368300ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368301ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368301ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000368301ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000392353ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000392353ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000392353ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000448611ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000448611ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000448611ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000473598ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000473598ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000473598ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000496738ENST00000274853LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000496738ENST00000399199LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-5UTRENST00000496738ENST00000488324LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000383573LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000400554LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000412189LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000435006LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000435929LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000437121LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000438815LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000438945LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000443517LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000444206LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000449705LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000451544LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000455935LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000465704LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000472334LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000487859LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000491628LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000492746LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000493833LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000498031LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000548255LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000550073LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000551034LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000551049LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000551784LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000347559ENST00000552716LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000383573LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000400554LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000412189LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000435006LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000435929LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000437121LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000438815LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000438945LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000443517LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000444206LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000449705LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000451544LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000455935LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000465704LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000472334LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000487859LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000491628LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000492746LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000493833LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000498031LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000548255LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000550073LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000551034LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000551049LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000551784LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000361308ENST00000552716LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000383573LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000400554LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000412189LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000435006LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000435929LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000437121LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000438815LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000438945LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000443517LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000444206LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000449705LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000451544LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000455935LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000465704LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000472334LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000487859LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000491628LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000492746LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000493833LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000498031LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000548255LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000550073LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000551034LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000551049LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000551784LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368297ENST00000552716LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000383573LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000400554LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000412189LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000435006LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000435929LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000437121LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000438815LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000438945LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000443517LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000444206LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000449705LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000451544LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000455935LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000465704LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000472334LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000487859LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000491628LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000492746LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000493833LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000498031LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000548255LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000550073LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000551034LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000551049LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000551784LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368299ENST00000552716LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000383573LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000400554LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000412189LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000435006LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000435929LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000437121LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000438815LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000438945LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000443517LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000444206LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000449705LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000451544LMNAchr1

156076614

+PPP1R18chr6

30647166

-
intron-intronENST00000368300ENST00000455935LMNAchr1

156076614

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intron-intronENST00000473598ENST00000438945LMNAchr1

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intron-intronENST00000473598ENST00000444206LMNAchr1

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intron-intronENST00000473598ENST00000455935LMNAchr1

156076614

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intron-intronENST00000473598ENST00000465704LMNAchr1

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intron-intronENST00000473598ENST00000472334LMNAchr1

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30647166

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intron-intronENST00000473598ENST00000487859LMNAchr1

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156076614

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156076614

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156076614

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156076614

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156076614

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156076614

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30647166

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intron-intronENST00000496738ENST00000437121LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000438815LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000438945LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000443517LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000444206LMNAchr1

156076614

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intron-intronENST00000496738ENST00000449705LMNAchr1

156076614

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30647166

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156076614

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156076614

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30647166

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intron-intronENST00000496738ENST00000465704LMNAchr1

156076614

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30647166

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156076614

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intron-intronENST00000496738ENST00000487859LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000491628LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000492746LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000493833LMNAchr1

156076614

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30647166

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156076614

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30647166

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intron-intronENST00000496738ENST00000548255LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000550073LMNAchr1

156076614

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30647166

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intron-intronENST00000496738ENST00000551034LMNAchr1

156076614

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30647166

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156076614

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30647166

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intron-intronENST00000496738ENST00000551784LMNAchr1

156076614

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-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

Top

Fusion Genomic Features for LMNA-PPP1R18


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

Top

Fusion Protein Features for LMNA-PPP1R18


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:156076614/:30647166)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LMNA

P02545

PPP1R18

Q6NYC8

FUNCTION: Lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane, which is thought to provide a framework for the nuclear envelope and may also interact with chromatin. Lamin A and C are present in equal amounts in the lamina of mammals. Recruited by DNA repair proteins XRCC4 and IFFO1 to the DNA double-strand breaks (DSBs) to prevent chromosome translocation by immobilizing broken DNA ends (PubMed:31548606). Plays an important role in nuclear assembly, chromatin organization, nuclear membrane and telomere dynamics. Required for normal development of peripheral nervous system and skeletal muscle and for muscle satellite cell proliferation (PubMed:10080180, PubMed:22431096, PubMed:10814726, PubMed:11799477, PubMed:18551513). Required for osteoblastogenesis and bone formation (PubMed:12075506, PubMed:15317753, PubMed:18611980). Also prevents fat infiltration of muscle and bone marrow, helping to maintain the volume and strength of skeletal muscle and bone (PubMed:10587585). Required for cardiac homeostasis (PubMed:10580070, PubMed:12927431, PubMed:18611980, PubMed:23666920). {ECO:0000269|PubMed:10080180, ECO:0000269|PubMed:10580070, ECO:0000269|PubMed:10587585, ECO:0000269|PubMed:10814726, ECO:0000269|PubMed:11799477, ECO:0000269|PubMed:12075506, ECO:0000269|PubMed:12927431, ECO:0000269|PubMed:15317753, ECO:0000269|PubMed:18551513, ECO:0000269|PubMed:18611980, ECO:0000269|PubMed:22431096, ECO:0000269|PubMed:23666920, ECO:0000269|PubMed:31548606}.; FUNCTION: Prelamin-A/C can accelerate smooth muscle cell senescence. It acts to disrupt mitosis and induce DNA damage in vascular smooth muscle cells (VSMCs), leading to mitotic failure, genomic instability, and premature senescence.FUNCTION: [Isoform 1]: May target protein phosphatase 1 to F-actin cytoskeleton. {ECO:0000269|PubMed:24434620}.; FUNCTION: [Isoform 4]: May target protein phosphatase 1 to F-actin cytoskeleton. {ECO:0000269|PubMed:17374523}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for LMNA-PPP1R18


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for LMNA-PPP1R18


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for LMNA-PPP1R18


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for LMNA-PPP1R18


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource