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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:ANO1-PLXDC1 (FusionGDB2 ID:4860)

Fusion Gene Summary for ANO1-PLXDC1

check button Fusion gene summary
Fusion gene informationFusion gene name: ANO1-PLXDC1
Fusion gene ID: 4860
HgeneTgene
Gene symbol

ANO1

PLXDC1

Gene ID

55107

57125

Gene nameanoctamin 1plexin domain containing 1
SynonymsDOG1|ORAOV2|TAOS2|TMEM16ATEM3|TEM7
Cytomap

11q13.3

17q12

Type of geneprotein-codingprotein-coding
Descriptionanoctamin-1Ca2+-activated Cl- channelanoctamin 1, calcium activated chloride channelcalcium activated chloride channeldiscovered on gastrointestinal stromal tumors protein 1oral cancer overexpressed 2transmembrane protein 16A (eight membrane-spanninplexin domain-containing protein 12410003I07Riktumor endothelial marker 3tumor endothelial marker 7
Modification date2020031320200313
UniProtAcc

Q5XXA6

.
Ensembl transtripts involved in fusion geneENST00000355303, ENST00000538023, 
ENST00000398543, ENST00000316296, 
ENST00000525494, ENST00000530676, 
ENST00000531349, 		ENST00000444911, 
ENST00000539608, ENST00000493200, 
ENST00000394316, ENST00000315392, 
Fusion gene scores* DoF score20 X 18 X 9=324013 X 9 X 6=702
# samples 2015
** MAII scorelog2(20/3240*10)=-4.01792190799726
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(15/702*10)=-2.22650852980868
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: ANO1 [Title/Abstract] AND PLXDC1 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointANO1(69924819)-PLXDC1(37228719), # samples:1
ANO1(69926717)-PLXDC1(37224199), # samples:1
Anticipated loss of major functional domain due to fusion event.ANO1-PLXDC1 seems lost the major protein functional domain in Hgene partner, which is a essential gene due to the frame-shifted ORF.
ANO1-PLXDC1 seems lost the major protein functional domain in Hgene partner, which is a IUPHAR drug target due to the frame-shifted ORF.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneANO1

GO:0006812

cation transport

22946059


check buttonFusion gene breakpoints across ANO1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across PLXDC1 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4BRCATCGA-AC-A3QQ-01AANO1chr11

69924819

+PLXDC1chr17

37228719

+
ChimerDB4BRCATCGA-AC-A3QQ-01AANO1chr11

69926717

+PLXDC1chr17

37224199

+


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Fusion Gene ORF analysis for ANO1-PLXDC1

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000355303ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-3UTRENST00000355303ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-3UTRENST00000538023ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-3UTRENST00000538023ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-5UTRENST00000355303ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-5UTRENST00000538023ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-intronENST00000355303ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5CDS-intronENST00000538023ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5UTR-3CDSENST00000398543ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5UTR-3UTRENST00000398543ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5UTR-3UTRENST00000398543ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5UTR-5UTRENST00000398543ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
5UTR-intronENST00000398543ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
Frame-shiftENST00000355303ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
Frame-shiftENST00000538023ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3CDSENST00000316296ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3CDSENST00000316296ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000355303ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000398543ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000525494ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3CDSENST00000525494ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000530676ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3CDSENST00000530676ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000531349ENST00000315392ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3CDSENST00000531349ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3CDSENST00000538023ENST00000315392ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000316296ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000316296ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000316296ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000316296ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000355303ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000355303ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000398543ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000398543ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000525494ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000525494ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000525494ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000525494ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000530676ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000530676ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000530676ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000530676ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000531349ENST00000444911ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000531349ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000531349ENST00000539608ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-3UTRENST00000531349ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000538023ENST00000444911ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-3UTRENST00000538023ENST00000539608ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000316296ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-5UTRENST00000316296ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000355303ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000398543ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000525494ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-5UTRENST00000525494ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000530676ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-5UTRENST00000530676ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000531349ENST00000493200ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-5UTRENST00000531349ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-5UTRENST00000538023ENST00000493200ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000316296ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-intronENST00000316296ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000355303ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000398543ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000525494ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-intronENST00000525494ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000530676ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-intronENST00000530676ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000531349ENST00000394316ANO1chr11

69924819

+PLXDC1chr17

37228719

+
intron-intronENST00000531349ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+
intron-intronENST00000538023ENST00000394316ANO1chr11

69926717

+PLXDC1chr17

37224199

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for ANO1-PLXDC1


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for ANO1-PLXDC1


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:69924819/:37228719)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ANO1

Q5XXA6

.
FUNCTION: Calcium-activated chloride channel (CaCC) which plays a role in transepithelial anion transport and smooth muscle contraction. Required for the normal functioning of the interstitial cells of Cajal (ICCs) which generate electrical pacemaker activity in gastrointestinal smooth muscles. Acts as a major contributor to basal and stimulated chloride conductance in airway epithelial cells and plays an important role in tracheal cartilage development. {ECO:0000269|PubMed:20056604, ECO:0000269|PubMed:21984732, ECO:0000269|PubMed:22178883, ECO:0000269|PubMed:22946059}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for ANO1-PLXDC1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for ANO1-PLXDC1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for ANO1-PLXDC1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for ANO1-PLXDC1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource