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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:MFHAS1-NDUFA13 (FusionGDB2 ID:53201) |
Fusion Gene Summary for MFHAS1-NDUFA13 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MFHAS1-NDUFA13 | Fusion gene ID: 53201 | Hgene | Tgene | Gene symbol | MFHAS1 | NDUFA13 | Gene ID | 9258 | 51079 |
| Gene name | malignant fibrous histiocytoma amplified sequence 1 | NADH:ubiquinone oxidoreductase subunit A13 | |
| Synonyms | LRRC65|MASL1|ROCO4 | B16.6|CDA016|CGI-39|GRIM-19|GRIM19|MC1DN28 | |
| Cytomap | 8p23.1 | 19p13.11 | |
| Type of gene | protein-coding | protein-coding | |
| Description | malignant fibrous histiocytoma-amplified sequence 1MFH-amplified sequences with leucine-rich tandem repeats 1leucine rich repeat containing 65malignant fibrous histiocytoma-amplified sequence with leucine-rich tandem repeats 1malignant fibrous histioc | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13CI-B16.6NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13NADH-ubiquinone oxidoreductase B16.6 subunitcell death regulatory protein GRIM-19cell death-regulatory protein GRIM19complex I | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q9Y4C4 | Q9P0J0 | |
| Ensembl transtripts involved in fusion gene | ENST00000276282, ENST00000520091, | ENST00000252576, ENST00000428459, ENST00000503283, ENST00000507754, ENST00000512771, | |
| Fusion gene scores | * DoF score | 25 X 15 X 5=1875 | 10 X 9 X 7=630 |
| # samples | 25 | 13 | |
| ** MAII score | log2(25/1875*10)=-2.90689059560852 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(13/630*10)=-2.27684020535882 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MFHAS1 [Title/Abstract] AND NDUFA13 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | MFHAS1(8643265)-NDUFA13(19639006), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | NDUFA13 | GO:0030308 | negative regulation of cell growth | 10924506 |
| Tgene | NDUFA13 | GO:0035458 | cellular response to interferon-beta | 17297443 |
| Tgene | NDUFA13 | GO:0045039 | protein import into mitochondrial inner membrane | 23271731 |
| Tgene | NDUFA13 | GO:0045892 | negative regulation of transcription, DNA-templated | 12867595 |
| Tgene | NDUFA13 | GO:0071300 | cellular response to retinoic acid | 17297443 |
| Tgene | NDUFA13 | GO:0097190 | apoptotic signaling pathway | 10924506 |
| Fusion gene breakpoints across MFHAS1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across NDUFA13 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS5.0 | N/A | AW873422 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
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Fusion Gene ORF analysis for MFHAS1-NDUFA13 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3UTR | ENST00000276282 | ENST00000252576 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-3UTR | ENST00000520091 | ENST00000252576 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000276282 | ENST00000428459 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000276282 | ENST00000503283 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000276282 | ENST00000507754 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000276282 | ENST00000512771 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000520091 | ENST00000428459 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000520091 | ENST00000503283 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000520091 | ENST00000507754 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| intron-intron | ENST00000520091 | ENST00000512771 | MFHAS1 | chr8 | 8643265 | + | NDUFA13 | chr19 | 19639006 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for MFHAS1-NDUFA13 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for MFHAS1-NDUFA13 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:8643265/:19639006) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MFHAS1 | NDUFA13 |
| FUNCTION: Probable GTP-binding protein (PubMed:24286120). Functions in innate immunity and more specifically the inflammatory response as a regulator of the Toll-like receptor TLR2 and TLR4 signaling pathways (PubMed:26599367, PubMed:28471450, PubMed:28609714). Negatively regulates the part of the TLR4 signaling pathway that leads to the activation of the transcription factor AP-1. By retaining the phosphatase complex PP2A into the cytoplasm, prevents the dephosphorylation of the AP-1 subunit JUN which is required for proper activation of the transcription factor (PubMed:28609714). Both inhibits and activates the TLR2-dependent signaling pathway (PubMed:26599367). Positively regulates the TLR2 signaling pathway to activate specifically the downstream p38 and JNK MAP kinases and promote the polarization of macrophages toward the pro-inflammatory M1 phenotype (PubMed:28471450). It may also play a role in the regulation of inflammation induced by high glucose through the PKB/AKT signaling pathway (PubMed:29168081). Also involved in erythrocyte differentiation through activation of the ERK1/ERK2 signaling pathway (PubMed:23327923). {ECO:0000269|PubMed:23327923, ECO:0000269|PubMed:24286120, ECO:0000269|PubMed:26599367, ECO:0000269|PubMed:28471450, ECO:0000269|PubMed:28609714, ECO:0000269|PubMed:29168081}. | FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis (PubMed:27626371). Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (PubMed:27626371). Involved in the interferon/all-trans-retinoic acid (IFN/RA) induced cell death. This apoptotic activity is inhibited by interaction with viral IRF1. Prevents the transactivation of STAT3 target genes. May play a role in CARD15-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes (PubMed:15753091). {ECO:0000269|PubMed:12628925, ECO:0000269|PubMed:12867595, ECO:0000269|PubMed:15753091, ECO:0000269|PubMed:27626371}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for MFHAS1-NDUFA13 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for MFHAS1-NDUFA13 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for MFHAS1-NDUFA13 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for MFHAS1-NDUFA13 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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