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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:MFSD2A-SLC5A9 (FusionGDB2 ID:53270)

Fusion Gene Summary for MFSD2A-SLC5A9

check button Fusion gene summary
Fusion gene informationFusion gene name: MFSD2A-SLC5A9
Fusion gene ID: 53270
HgeneTgene
Gene symbol

MFSD2A

SLC5A9

Gene ID

84879

200010

Gene namemajor facilitator superfamily domain containing 2Asolute carrier family 5 member 9
SynonymsMCPH15|MFSD2|NLS1SGLT4
Cytomap

1p34.2

1p33

Type of geneprotein-codingprotein-coding
Descriptionsodium-dependent lysophosphatidylcholine symporter 1major facilitator superfamily domain-containing protein 2Asodium-dependent LPC symporter 1sodium/glucose cotransporter 4Na(+)/glucose cotransporter 4hSGLT4solute carrier family 5 (sodium/glucose cotransporter), member 9solute carrier family 5 (sodium/sugar cotransporter), member 9
Modification date2020031320200320
UniProtAcc

Q8NA29

.
Ensembl transtripts involved in fusion geneENST00000372809, ENST00000372811, 
ENST00000420632, ENST00000480630, 
ENST00000420136, ENST00000471020, 
ENST00000236495, ENST00000438567, 
ENST00000533824, 
Fusion gene scores* DoF score7 X 8 X 3=1681 X 1 X 1=1
# samples 81
** MAII scorelog2(8/168*10)=-1.0703893278914
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(1/1*10)=3.32192809488736
Context

PubMed: MFSD2A [Title/Abstract] AND SLC5A9 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointMFSD2A(40424497)-SLC5A9(48703351), # samples:3
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneMFSD2A

GO:0051977

lysophospholipid transport

24828044


check buttonFusion gene breakpoints across MFSD2A (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check buttonFusion gene breakpoints across SLC5A9 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.
all structure

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4LUSCTCGA-58-8392-01AMFSD2Achr1

40424497

-SLC5A9chr1

48703351

+
ChimerDB4LUSCTCGA-58-8392-01AMFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
ChimerDB4LUSCTCGA-58-8392MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+


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Fusion Gene ORF analysis for MFSD2A-SLC5A9

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-3UTRENST00000372809ENST00000420136MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
5CDS-3UTRENST00000372811ENST00000420136MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
5CDS-intronENST00000372809ENST00000471020MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
5CDS-intronENST00000372811ENST00000471020MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372809ENST00000236495MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372809ENST00000438567MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372809ENST00000533824MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372811ENST00000236495MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372811ENST00000438567MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
In-frameENST00000372811ENST00000533824MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000420632ENST00000236495MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000420632ENST00000438567MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000420632ENST00000533824MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000480630ENST00000236495MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000480630ENST00000438567MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3CDSENST00000480630ENST00000533824MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3UTRENST00000420632ENST00000420136MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-3UTRENST00000480630ENST00000420136MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-intronENST00000420632ENST00000471020MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+
intron-intronENST00000480630ENST00000471020MFSD2Achr1

40424497

+SLC5A9chr1

48703351

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)
ENST00000372811MFSD2Achr140424497+ENST00000533824SLC5A9chr148703351+13285165321269245
ENST00000372811MFSD2Achr140424497+ENST00000438567SLC5A9chr148703351+23675165321269245
ENST00000372811MFSD2Achr140424497+ENST00000236495SLC5A9chr148703351+23715165321269245
ENST00000372809MFSD2Achr140424497+ENST00000533824SLC5A9chr148703351+13475355511288245
ENST00000372809MFSD2Achr140424497+ENST00000438567SLC5A9chr148703351+23865355511288245
ENST00000372809MFSD2Achr140424497+ENST00000236495SLC5A9chr148703351+23905355511288245

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score
ENST00000372811ENST00000533824MFSD2Achr140424497+SLC5A9chr148703351+0.130201980.86979806
ENST00000372811ENST00000438567MFSD2Achr140424497+SLC5A9chr148703351+0.332162170.6678378
ENST00000372811ENST00000236495MFSD2Achr140424497+SLC5A9chr148703351+0.32687940.6731206
ENST00000372809ENST00000533824MFSD2Achr140424497+SLC5A9chr148703351+0.107718430.8922816
ENST00000372809ENST00000438567MFSD2Achr140424497+SLC5A9chr148703351+0.270943670.7290563
ENST00000372809ENST00000236495MFSD2Achr140424497+SLC5A9chr148703351+0.267913640.7320863

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Fusion Genomic Features for MFSD2A-SLC5A9


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.
genomic feature

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.
genomic feature of top 1%

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Fusion Protein Features for MFSD2A-SLC5A9


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr1:40424497/chr1:48703351)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MFSD2A

Q8NA29

.
FUNCTION: Sodium-dependent lysophosphatidylcholine (LPC) symporter, which plays an essential role for blood-brain barrier formation and function (PubMed:24828040). Specifically expressed in endothelium of the blood-brain barrier of micro-vessels and transports LPC into the brain (By similarity). Transport of LPC is essential because it constitutes the major mechanism by which docosahexaenoic acid (DHA), an omega-3 fatty acid that is essential for normal brain growth and cognitive function, enters the brain (PubMed:26005868). Transports LPC carrying long-chain fatty acids such LPC oleate and LPC palmitate with a minimum acyl chain length of 14 carbons (By similarity). Does not transport docosahexaenoic acid in unesterified fatty acid (By similarity). Specifically required for blood-brain barrier formation and function, probably by mediating lipid transport (By similarity). Not required for central nervous system vascular morphogenesis (By similarity). Acts as a transporter for tunicamycin, an inhibitor of asparagine-linked glycosylation (PubMed:21677192). In placenta, acts as a receptor for ERVFRD-1/syncytin-2 and is required for trophoblast fusion (PubMed:18988732, PubMed:23177091). {ECO:0000250|UniProtKB:Q9DA75, ECO:0000269|PubMed:18988732, ECO:0000269|PubMed:21677192, ECO:0000269|PubMed:23177091, ECO:0000269|PubMed:24828040, ECO:0000269|PubMed:26005868}.FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+31435_38130544.0Compositional biasNote=Poly-Lys
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+31435_38117531.0Compositional biasNote=Poly-Lys
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314102_128130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+3141_46130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+31468_80130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+3141_46117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+31468_80117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+31447_67130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+31481_101130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+31447_67117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+31481_101117531.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015481_487455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015509_530455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015552_660455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914449_459430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914481_487430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914509_530430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914552_660430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015460_480455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015488_508455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015531_551455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015661_681455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914428_448430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914460_480430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914488_508430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914531_551430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914661_681430682.0TransmembraneHelical

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314150_160130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314182_256130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314278_310130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314332_344130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314366_370130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314392_393130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314415_437130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314459_480130544.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314502_543130544.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314102_128117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314150_160117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314182_256117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314278_310117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314332_344117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314366_370117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314392_393117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314415_437117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314459_480117531.0Topological domainExtracellular
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314502_543117531.0Topological domainCytoplasmic
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314129_149130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314161_181130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314257_277130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314311_331130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314345_365130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314371_391130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314394_414130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314438_458130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372809+314481_501130544.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314129_149117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314161_181117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314257_277117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314311_331117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314345_365117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314371_391117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314394_414117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314438_458117531.0TransmembraneHelical
HgeneMFSD2Achr1:40424497chr1:48703351ENST00000372811+314481_501117531.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015136_157455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015179_190455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST0000023649510151_36455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015212_217455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015239_275455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015297_317455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015339_383455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015407_427455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015449_459455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000236495101558_75455707.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000236495101599_114455707.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914136_157430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914179_190430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000004385679141_36430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914212_217430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914239_275430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914297_317430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914339_383430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914407_427430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST0000043856791458_75430682.0Topological domainCytoplasmic
TgeneSLC5A9chr1:40424497chr1:48703351ENST0000043856791499_114430682.0Topological domainExtracellular
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015115_135455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015158_178455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015191_211455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015218_238455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015276_296455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015318_338455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000236495101537_57455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015384_406455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST000002364951015428_448455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000236495101576_98455707.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914115_135430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914158_178430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914191_211430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914218_238430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914276_296430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914318_338430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST0000043856791437_57430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST00000438567914384_406430682.0TransmembraneHelical
TgeneSLC5A9chr1:40424497chr1:48703351ENST0000043856791476_98430682.0TransmembraneHelical


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Fusion Gene Sequence for MFSD2A-SLC5A9


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.
>53270_53270_1_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000236495_length(transcript)=2390nt_BP=535nt
GCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGAGGAGCAGCGGCCTGC
GGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGG
CGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAAGAAGAAACAACAGTTGTCTG
TTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGATCTACCTATTGG
ATGTGGCTCAGAAGGATGAGGAAGTTGTCTTTTGCTTCTCCTCATTCCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCC
GAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGT
TTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTG
TCACCAGTTACCTGGCCCCACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCC
TCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAG
CAGTGCTGAAGGACTTCCACTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAA
CTCCCATCCCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCA
CACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAG
CCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGG
CTGCGCTAGAACAGAAGCTGACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCA
ACATCTTCCTCTGGGGCTATTTTGCGTGATTCCACAGACCTGGCTTCAGTGTAGACAGATTAAACAAAGCCCAAGCCTGTCAGCCACAGA
AACAGGCTCTCCTCTTACTTTGCTGTCTAAACTGGAGATCACAGAAGTCAAGACTGCAAGCTCCCCTGAAGAGAATCCAACTCAACCTGC
ACACTTGACAAGTGGAGAAACAGAAGCCCAGAGAGAGCACTGGGTTTGTTCAGGACCACCCAGAAGGTGTCACACGGGGTTTCCCCACTC
TTTCTGATATATTGCCTTACAGACCTACCTCAAACACACTGTTTCCACCCTCTTCTTGAATGTATTCAGTAGCCTTTACTGAATGTGTGT
CTTGAGAGTAGAAAAATGGAGGATACAAGAAAAGGAGCAGGAAGAAATTTGCAAAAATCCAAGAGCACCTTTGCTCCCCCTTATCCTCCT
TCCTCTTCCCCTTTCTAGTTCCCCTACCTCTCTATCTTTCTATTCTCACCAATAATCTCTTTGTTGCATGAATTTACCCAGGAGAGTCCT
ATATTTCCATTGGTGGCTCCACAGTGGTGGCTGTCAGACCCGAAGGGGTGGGGAGCCAAGGGTGGACTTTAAGCATGGTGACAGATGGTA
TTTTGGGCAGAAAGCTCTTAGACAATGGACTATCCAAAGCACTATTTAAATTCTGCCTCTTCCTACTCTCTAACCCAAATATGCACAAAC
TCTCTATGGCCTTGAGAAGCAGTTGGAGAGACATGACTTGTTAAAACCTCAAGGAATCAAGACATGTTACTCTGTATTTAAGGGTAAGCC
CCACAGCGGGCAGCACAAACAGCCTGGGAGCCACTGTGCCTGTGCTTCTCTGTCCTTCTCCCTTTGCTTGCCATGAATCCGCATACCTTG
GAATACACTGTGACCCCAGTTAAGTGTCCCTTCGCCAGGAAGCTGCCGCAACGTCCAGACCTGGGTCAAGTTCCCACTCCTGCTCCCATA
GCCTTGACCTGCTTCTGTCACAGCACTGATCACACTGAGATGGAAGACTCCAGGGGGCAAGGACCAAGGGCCATATCCCAAGTGACTTTG

>53270_53270_1_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000236495_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------
>53270_53270_2_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000438567_length(transcript)=2386nt_BP=535nt
GCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGAGGAGCAGCGGCCTGC
GGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGG
CGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAAGAAGAAACAACAGTTGTCTG
TTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGATCTACCTATTGG
ATGTGGCTCAGAAGGATGAGGAAGTTGTCTTTTGCTTCTCCTCATTCCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCC
GAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGT
TTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTG
TCACCAGTTACCTGGCCCCACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCC
TCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAG
CAGTGCTGAAGGACTTCCACTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAA
CTCCCATCCCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCA
CACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAG
CCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGG
CTGCGCTAGAACAGAAGCTGACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCA
ACATCTTCCTCTGGGGCTATTTTGCGTGATTCCACAGACCTGGCTTCAGTGTAGACAGATTAAACAAAGCCCAAGCCTGTCAGCCACAGA
AACAGGCTCTCCTCTTACTTTGCTGTCTAAACTGGAGATCACAGAAGTCAAGACTGCAAGCTCCCCTGAAGAGAATCCAACTCAACCTGC
ACACTTGACAAGTGGAGAAACAGAAGCCCAGAGAGAGCACTGGGTTTGTTCAGGACCACCCAGAAGGTGTCACACGGGGTTTCCCCACTC
TTTCTGATATATTGCCTTACAGACCTACCTCAAACACACTGTTTCCACCCTCTTCTTGAATGTATTCAGTAGCCTTTACTGAATGTGTGT
CTTGAGAGTAGAAAAATGGAGGATACAAGAAAAGGAGCAGGAAGAAATTTGCAAAAATCCAAGAGCACCTTTGCTCCCCCTTATCCTCCT
TCCTCTTCCCCTTTCTAGTTCCCCTACCTCTCTATCTTTCTATTCTCACCAATAATCTCTTTGTTGCATGAATTTACCCAGGAGAGTCCT
ATATTTCCATTGGTGGCTCCACAGTGGTGGCTGTCAGACCCGAAGGGGTGGGGAGCCAAGGGTGGACTTTAAGCATGGTGACAGATGGTA
TTTTGGGCAGAAAGCTCTTAGACAATGGACTATCCAAAGCACTATTTAAATTCTGCCTCTTCCTACTCTCTAACCCAAATATGCACAAAC
TCTCTATGGCCTTGAGAAGCAGTTGGAGAGACATGACTTGTTAAAACCTCAAGGAATCAAGACATGTTACTCTGTATTTAAGGGTAAGCC
CCACAGCGGGCAGCACAAACAGCCTGGGAGCCACTGTGCCTGTGCTTCTCTGTCCTTCTCCCTTTGCTTGCCATGAATCCGCATACCTTG
GAATACACTGTGACCCCAGTTAAGTGTCCCTTCGCCAGGAAGCTGCCGCAACGTCCAGACCTGGGTCAAGTTCCCACTCCTGCTCCCATA
GCCTTGACCTGCTTCTGTCACAGCACTGATCACACTGAGATGGAAGACTCCAGGGGGCAAGGACCAAGGGCCATATCCCAAGTGACTTTG

>53270_53270_2_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000438567_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------
>53270_53270_3_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000533824_length(transcript)=1347nt_BP=535nt
GCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGAGGAGCAGCGGCCTGC
GGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGG
CGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAAGAAGAAACAACAGTTGTCTG
TTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGATCTACCTATTGG
ATGTGGCTCAGAAGGATGAGGAAGTTGTCTTTTGCTTCTCCTCATTCCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCC
GAGCCTGGGATGCCATCACAGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGT
TTGTGGTGTTCCTGGTTGTCATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTG
TCACCAGTTACCTGGCCCCACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCC
TCGTGTTTGGCCTGGGAGTGGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAG
CAGTGCTGAAGGACTTCCACTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAA
CTCCCATCCCTGAGGAACAGCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCA
CACCGGAGATATCCGAGAGGCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAG
CCCCAAGCAGGTCCTGGGGAAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGG
CTGCGCTAGAACAGAAGCTGACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCA

>53270_53270_3_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372809_SLC5A9_chr1_48703351_ENST00000533824_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------
>53270_53270_4_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000236495_length(transcript)=2371nt_BP=516nt
GAGGGGGCGTGCAGCAGAGTGCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCT
TGGGAGGAGCAGCGGCCTGCGGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGG
CGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAA
GAAGAAACAACAGTTGTCTGTTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTT
CCTTCAGATCTACCTATTGGATGTGGCTCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCCGAGCCTGGGATGCCATCAC
AGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGTTTGTGGTGTTCCTGGTTGT
CATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCC
ACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGCCTGGGAGT
GGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAGCAGTGCTGAAGGACTTCCA
CTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAACTCCCATCCCTGAGGAACA
GCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCACACCGGAGATATCCGAGAG
GCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGG
AAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCGCTAGAACAGAAGCT
GACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCAACATCTTCCTCTGGGGCTA
TTTTGCGTGATTCCACAGACCTGGCTTCAGTGTAGACAGATTAAACAAAGCCCAAGCCTGTCAGCCACAGAAACAGGCTCTCCTCTTACT
TTGCTGTCTAAACTGGAGATCACAGAAGTCAAGACTGCAAGCTCCCCTGAAGAGAATCCAACTCAACCTGCACACTTGACAAGTGGAGAA
ACAGAAGCCCAGAGAGAGCACTGGGTTTGTTCAGGACCACCCAGAAGGTGTCACACGGGGTTTCCCCACTCTTTCTGATATATTGCCTTA
CAGACCTACCTCAAACACACTGTTTCCACCCTCTTCTTGAATGTATTCAGTAGCCTTTACTGAATGTGTGTCTTGAGAGTAGAAAAATGG
AGGATACAAGAAAAGGAGCAGGAAGAAATTTGCAAAAATCCAAGAGCACCTTTGCTCCCCCTTATCCTCCTTCCTCTTCCCCTTTCTAGT
TCCCCTACCTCTCTATCTTTCTATTCTCACCAATAATCTCTTTGTTGCATGAATTTACCCAGGAGAGTCCTATATTTCCATTGGTGGCTC
CACAGTGGTGGCTGTCAGACCCGAAGGGGTGGGGAGCCAAGGGTGGACTTTAAGCATGGTGACAGATGGTATTTTGGGCAGAAAGCTCTT
AGACAATGGACTATCCAAAGCACTATTTAAATTCTGCCTCTTCCTACTCTCTAACCCAAATATGCACAAACTCTCTATGGCCTTGAGAAG
CAGTTGGAGAGACATGACTTGTTAAAACCTCAAGGAATCAAGACATGTTACTCTGTATTTAAGGGTAAGCCCCACAGCGGGCAGCACAAA
CAGCCTGGGAGCCACTGTGCCTGTGCTTCTCTGTCCTTCTCCCTTTGCTTGCCATGAATCCGCATACCTTGGAATACACTGTGACCCCAG
TTAAGTGTCCCTTCGCCAGGAAGCTGCCGCAACGTCCAGACCTGGGTCAAGTTCCCACTCCTGCTCCCATAGCCTTGACCTGCTTCTGTC
ACAGCACTGATCACACTGAGATGGAAGACTCCAGGGGGCAAGGACCAAGGGCCATATCCCAAGTGACTTTGTACCCAGAAAATAACAGCT

>53270_53270_4_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000236495_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------
>53270_53270_5_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000438567_length(transcript)=2367nt_BP=516nt
GAGGGGGCGTGCAGCAGAGTGCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCT
TGGGAGGAGCAGCGGCCTGCGGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGG
CGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAA
GAAGAAACAACAGTTGTCTGTTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTT
CCTTCAGATCTACCTATTGGATGTGGCTCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCCGAGCCTGGGATGCCATCAC
AGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGTTTGTGGTGTTCCTGGTTGT
CATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCC
ACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGCCTGGGAGT
GGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAGCAGTGCTGAAGGACTTCCA
CTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAACTCCCATCCCTGAGGAACA
GCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCACACCGGAGATATCCGAGAG
GCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGG
AAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCGCTAGAACAGAAGCT
GACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCAACATCTTCCTCTGGGGCTA
TTTTGCGTGATTCCACAGACCTGGCTTCAGTGTAGACAGATTAAACAAAGCCCAAGCCTGTCAGCCACAGAAACAGGCTCTCCTCTTACT
TTGCTGTCTAAACTGGAGATCACAGAAGTCAAGACTGCAAGCTCCCCTGAAGAGAATCCAACTCAACCTGCACACTTGACAAGTGGAGAA
ACAGAAGCCCAGAGAGAGCACTGGGTTTGTTCAGGACCACCCAGAAGGTGTCACACGGGGTTTCCCCACTCTTTCTGATATATTGCCTTA
CAGACCTACCTCAAACACACTGTTTCCACCCTCTTCTTGAATGTATTCAGTAGCCTTTACTGAATGTGTGTCTTGAGAGTAGAAAAATGG
AGGATACAAGAAAAGGAGCAGGAAGAAATTTGCAAAAATCCAAGAGCACCTTTGCTCCCCCTTATCCTCCTTCCTCTTCCCCTTTCTAGT
TCCCCTACCTCTCTATCTTTCTATTCTCACCAATAATCTCTTTGTTGCATGAATTTACCCAGGAGAGTCCTATATTTCCATTGGTGGCTC
CACAGTGGTGGCTGTCAGACCCGAAGGGGTGGGGAGCCAAGGGTGGACTTTAAGCATGGTGACAGATGGTATTTTGGGCAGAAAGCTCTT
AGACAATGGACTATCCAAAGCACTATTTAAATTCTGCCTCTTCCTACTCTCTAACCCAAATATGCACAAACTCTCTATGGCCTTGAGAAG
CAGTTGGAGAGACATGACTTGTTAAAACCTCAAGGAATCAAGACATGTTACTCTGTATTTAAGGGTAAGCCCCACAGCGGGCAGCACAAA
CAGCCTGGGAGCCACTGTGCCTGTGCTTCTCTGTCCTTCTCCCTTTGCTTGCCATGAATCCGCATACCTTGGAATACACTGTGACCCCAG
TTAAGTGTCCCTTCGCCAGGAAGCTGCCGCAACGTCCAGACCTGGGTCAAGTTCCCACTCCTGCTCCCATAGCCTTGACCTGCTTCTGTC
ACAGCACTGATCACACTGAGATGGAAGACTCCAGGGGGCAAGGACCAAGGGCCATATCCCAAGTGACTTTGTACCCAGAAAATAACAGCT

>53270_53270_5_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000438567_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------
>53270_53270_6_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000533824_length(transcript)=1328nt_BP=516nt
GAGGGGGCGTGCAGCAGAGTGCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCT
TGGGAGGAGCAGCGGCCTGCGGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGG
CGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAGAAAGAACCGAAAAA
GAAGAAACAACAGTTGTCTGTTTGCAACAAGCTTTGCTATGCACTTGGGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTT
CCTTCAGATCTACCTATTGGATGTGGCTCAGGTGGGCCCTTTCTCTGCCTCCATCATCCTGTTTGTGGGCCGAGCCTGGGATGCCATCAC
AGACCCCCTGGTGGGCCTCTGCATCAGCAAATCCCCCTGGACCTGCCTGGGTCGCCTTATGCCCTGAGTGTTTGTGGTGTTCCTGGTTGT
CATCAGCATCCTCTGGATCCCCATCATCCAAAGCTCCAACAGTGGGCAGCTCTTCGACTACATCCAGGCTGTCACCAGTTACCTGGCCCC
ACCCATCACCGCTCTCTTCCTGCTGGCCATCTTCTGCAAGAGGGTCACAGAGCCCGGAGCTTTCTGGGGCCTCGTGTTTGGCCTGGGAGT
GGGGCTTCTGCGTATGATCCTGGAGTTCTCATACCCAGCGCCAGCCTGTGGGGAGGTGGACCGGAGGCCAGCAGTGCTGAAGGACTTCCA
CTACCTGTACTTTGCAATCCTCCTCTGCGGGCTCACTGCCATCGTCATTGTCATTGTCAGCCTCTGTACAACTCCCATCCCTGAGGAACA
GCTCACACGCCTCACATGGTGGACTCGGAACTGCCCCCTCTCTGAGCTGGAGAAGGAGGCCCACGAGAGCACACCGGAGATATCCGAGAG
GCCAGCCGGGGAGTGCCCTGCAGGAGGTGGAGCGGCAGAGAACTCGAGCCTGGGCCAGGAGCAGCCTGAAGCCCCAAGCAGGTCCTGGGG
AAAGTTGCTCTGGAGCTGGTTCTGTGGGCTCTCTGGAACACCGGAGCAGGCCCTGAGCCCAGCAGAGAAGGCTGCGCTAGAACAGAAGCT
GACAAGCATTGAGGAGGAGCCACTCTGGAGACATGTCTGCAACATCAATGCTGTCCTTTTGCTGGCCATCAACATCTTCCTCTGGGGCTA

>53270_53270_6_MFSD2A-SLC5A9_MFSD2A_chr1_40424497_ENST00000372811_SLC5A9_chr1_48703351_ENST00000533824_length(amino acids)=245AA_BP=
MVVISILWIPIIQSSNSGQLFDYIQAVTSYLAPPITALFLLAIFCKRVTEPGAFWGLVFGLGVGLLRMILEFSYPAPACGEVDRRPAVLK
DFHYLYFAILLCGLTAIVIVIVSLCTTPIPEEQLTRLTWWTRNCPLSELEKEAHESTPEISERPAGECPAGGGAAENSSLGQEQPEAPSR

--------------------------------------------------------------

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Fusion Gene PPI Analysis for MFSD2A-SLC5A9


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for MFSD2A-SLC5A9


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for MFSD2A-SLC5A9


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource