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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:MIR29B1-DHX36 (FusionGDB2 ID:53832) |
Fusion Gene Summary for MIR29B1-DHX36 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MIR29B1-DHX36 | Fusion gene ID: 53832 | Hgene | Tgene | Gene symbol | MIR29B1 | DHX36 | Gene ID | 407024 | 170506 |
| Gene name | microRNA 29b-1 | DEAH-box helicase 36 | |
| Synonyms | MIRN29B1|miR-29b|miRNA29B1|mir-29b-1 | DDX36|G4R1|MLEL1|RHAU | |
| Cytomap | 7q32.3 | 3q25.2 | |
| Type of gene | ncRNA | protein-coding | |
| Description | hsa-mir-29b-1 | ATP-dependent DNA/RNA helicase DHX36ATP-dependent RNA helicase DHX36DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 36DEAD/H box polypeptide 36DEAH (Asp-Glu-Ala-His) box polypeptide 36DEAH box protein 36G4 resolvase-1MLE-like protein 1RNA helicase as | |
| Modification date | 20200329 | 20200313 | |
| UniProtAcc | . | Q9H2U1 | |
| Ensembl transtripts involved in fusion gene | ENST00000362111, ENST00000385015, | ENST00000308361, ENST00000329463, ENST00000496811, ENST00000544526, | |
| Fusion gene scores | * DoF score | 2 X 1 X 2=4 | 7 X 8 X 3=168 |
| # samples | 2 | 8 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(8/168*10)=-1.0703893278914 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: MIR29B1 [Title/Abstract] AND DHX36 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | MIR29B1(130596869)-DHX36(154033952), # samples:1 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MIR29B1 | GO:0008285 | negative regulation of cell proliferation | 19850741|24091622|24130168|25032858|25784815 |
| Hgene | MIR29B1 | GO:0010628 | positive regulation of gene expression | 19956414 |
| Hgene | MIR29B1 | GO:0010629 | negative regulation of gene expression | 19956414|20570858|25032858 |
| Hgene | MIR29B1 | GO:0010719 | negative regulation of epithelial to mesenchymal transition | 25032858 |
| Hgene | MIR29B1 | GO:0030335 | positive regulation of cell migration | 25435433 |
| Hgene | MIR29B1 | GO:0030336 | negative regulation of cell migration | 24091622|24130168|25032858|25428377|25784815 |
| Hgene | MIR29B1 | GO:0030512 | negative regulation of transforming growth factor beta receptor signaling pathway | 26687115 |
| Hgene | MIR29B1 | GO:0032966 | negative regulation of collagen biosynthetic process | 19913496|23221517 |
| Hgene | MIR29B1 | GO:0035195 | gene silencing by miRNA | 19850741|19913496|19956414|20041405|20086245|20479936|20570858|20657750|22745231|23221517|23857059|24091622|24130168|24578160|25032858|25428377|25435433|25744716|25784815|26687115|26820803|27089893|27812842 |
| Hgene | MIR29B1 | GO:0035278 | miRNA mediated inhibition of translation | 17404574|20657750 |
| Hgene | MIR29B1 | GO:0043065 | positive regulation of apoptotic process | 19850741|20041405|24130168|25784815 |
| Hgene | MIR29B1 | GO:0043409 | negative regulation of MAPK cascade | 25032858 |
| Hgene | MIR29B1 | GO:0044030 | regulation of DNA methylation | 23857059 |
| Hgene | MIR29B1 | GO:0051898 | negative regulation of protein kinase B signaling | 25032858|25428377 |
| Hgene | MIR29B1 | GO:0061754 | negative regulation of circulating fibrinogen levels | 20570858 |
| Hgene | MIR29B1 | GO:0090090 | negative regulation of canonical Wnt signaling pathway | 26687115 |
| Hgene | MIR29B1 | GO:1901223 | negative regulation of NIK/NF-kappaB signaling | 26687115 |
| Hgene | MIR29B1 | GO:1902110 | positive regulation of mitochondrial membrane permeability involved in apoptotic process | 20041405 |
| Hgene | MIR29B1 | GO:1903202 | negative regulation of oxidative stress-induced cell death | 19956414 |
| Hgene | MIR29B1 | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle | 24130168|25784815 |
| Tgene | DHX36 | GO:0010501 | RNA secondary structure unwinding | 18842585|20472641|21149580|21846770|22238380 |
| Tgene | DHX36 | GO:0017148 | negative regulation of translation | 24369427 |
| Tgene | DHX36 | GO:0034605 | cellular response to heat | 18854321 |
| Tgene | DHX36 | GO:0044806 | G-quadruplex DNA unwinding | 16150737|18842585 |
| Tgene | DHX36 | GO:0090669 | telomerase RNA stabilization | 22238380 |
| Tgene | DHX36 | GO:1903843 | cellular response to arsenite ion | 18854321 |
| Fusion gene breakpoints across MIR29B1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene breakpoints across DHX36 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-CD-8531-01A | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
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Fusion Gene ORF analysis for MIR29B1-DHX36 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000362111 | ENST00000308361 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000362111 | ENST00000329463 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000362111 | ENST00000496811 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000362111 | ENST00000544526 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000385015 | ENST00000308361 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000385015 | ENST00000329463 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000385015 | ENST00000496811 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| intron-3CDS | ENST00000385015 | ENST00000544526 | MIR29B1 | chr7 | 130596869 | - | DHX36 | chr3 | 154033952 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
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Fusion Genomic Features for MIR29B1-DHX36 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for MIR29B1-DHX36 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:130596869/:154033952) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| . | DHX36 |
| FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Multifunctional ATP-dependent helicase that unwinds G-quadruplex (G4) structures (PubMed:16150737, PubMed:18854321, PubMed:20472641, PubMed:21586581). Plays a role in many biological processes such as genomic integrity, gene expression regulations and as a sensor to initiate antiviral responses (PubMed:14731398, PubMed:18279852, PubMed:21993297, PubMed:22238380, PubMed:25579584). G4 structures correspond to helical structures containing guanine tetrads (By similarity). Binds with high affinity to and unwinds G4 structures that are formed in nucleic acids (G4-ADN and G4-RNA) (PubMed:16150737, PubMed:18842585, PubMed:20472641, PubMed:21586581, PubMed:24369427, PubMed:26195789). Plays a role in genomic integrity (PubMed:22238380). Converts the G4-RNA structure present in telomerase RNA template component (TREC) into a double-stranded RNA to promote P1 helix formation that acts as a template boundary ensuring accurate reverse transcription (PubMed:20472641, PubMed:21149580, PubMed:21846770, PubMed:22238380, PubMed:24151078, PubMed:25579584). Plays a role in transcriptional regulation (PubMed:21586581, PubMed:21993297). Resolves G4-DNA structures in promoters of genes, such as YY1, KIT/c-kit and ALPL and positively regulates their expression (PubMed:21993297). Plays a role in post-transcriptional regulation (PubMed:27940037). Unwinds a G4-RNA structure located in the 3'-UTR polyadenylation site of the pre-mRNA TP53 and stimulates TP53 pre-mRNA 3'-end processing in response to ultraviolet (UV)-induced DNA damage (PubMed:27940037). Binds to the precursor-microRNA-134 (pre-miR-134) terminal loop and regulates its transport into the synapto-dendritic compartment (By similarity). Involved in the pre-miR-134-dependent inhibition of target gene expression and the control of dendritic spine size (By similarity). Plays a role in the regulation of cytoplasmic mRNA translation and mRNA stability (PubMed:24369427, PubMed:26489465). Binds to both G4-RNA structures and alternative non-quadruplex-forming sequence within the 3'-UTR of the PITX1 mRNA regulating negatively PITX1 protein expression (PubMed:24369427). Binds to both G4-RNA structure in the 5'-UTR and AU-rich elements (AREs) localized in the 3'-UTR of NKX2-5 mRNA to either stimulate protein translation or induce mRNA decay in an ELAVL1-dependent manner, respectively (PubMed:26489465). Binds also to ARE sequences present in several mRNAs mediating exosome-mediated 3'-5' mRNA degradation (PubMed:14731398, PubMed:18279852). Involved in cytoplasmic urokinase-type plasminogen activator (uPA) mRNA decay (PubMed:14731398). Component of a multi-helicase-TICAM1 complex that acts as a cytoplasmic sensor of viral double-stranded RNA (dsRNA) and plays a role in the activation of a cascade of antiviral responses including the induction of proinflammatory cytokines via the adapter molecule TICAM1 (By similarity). Required for early embryonic development and hematopoiesis. Involved in the regulation of cardioblast differentiation and proliferation during heart development. Involved in spermatogonia differentiation. May play a role in ossification (By similarity). {ECO:0000250|UniProtKB:D4A2Z8, ECO:0000250|UniProtKB:Q05B79, ECO:0000250|UniProtKB:Q8VHK9, ECO:0000269|PubMed:14731398, ECO:0000269|PubMed:16150737, ECO:0000269|PubMed:18279852, ECO:0000269|PubMed:18842585, ECO:0000269|PubMed:18854321, ECO:0000269|PubMed:20472641, ECO:0000269|PubMed:21149580, ECO:0000269|PubMed:21586581, ECO:0000269|PubMed:21846770, ECO:0000269|PubMed:21993297, ECO:0000269|PubMed:22238380, ECO:0000269|PubMed:24151078, ECO:0000269|PubMed:24369427, ECO:0000269|PubMed:25579584, ECO:0000269|PubMed:26195789, ECO:0000269|PubMed:26489465, ECO:0000269|PubMed:27940037}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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Fusion Gene Sequence for MIR29B1-DHX36 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
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Fusion Gene PPI Analysis for MIR29B1-DHX36 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for MIR29B1-DHX36 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for MIR29B1-DHX36 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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