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 | Fusion Gene Summary |
| Fusion Gene ORF analysis |
| Fusion Genomic Features |
| Fusion Protein Features |
| Fusion Gene Sequence |
| Fusion Gene PPI analysis |
| Related Drugs |
| Related Diseases |
Fusion gene:MSL1-KRT24 (FusionGDB2 ID:55344) |
Fusion Gene Summary for MSL1-KRT24 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: MSL1-KRT24 | Fusion gene ID: 55344 | Hgene | Tgene | Gene symbol | MSL1 | KRT24 | Gene ID | 339287 | 192666 |
| Gene name | MSL complex subunit 1 | keratin 24 | |
| Synonyms | MSL-1 | K24|KA24 | |
| Cytomap | 17q21.1 | 17q21.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | male-specific lethal 1 homologMSL1-like 1male specific lethal 1 homologmale-specific lethal 1-like 1male-specific lethal-1 homolog 1 | keratin, type I cytoskeletal 24CK-24cytokeratin-24keratin 24, type Itype I keratin-24 | |
| Modification date | 20200313 | 20200313 | |
| UniProtAcc | Q68DK7 | . | |
| Ensembl transtripts involved in fusion gene | ENST00000579565, ENST00000398532, ENST00000577454, ENST00000578648, | ENST00000264651, | |
| Fusion gene scores | * DoF score | 9 X 6 X 5=270 | 4 X 1 X 3=12 |
| # samples | 9 | 4 | |
| ** MAII score | log2(9/270*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/12*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: MSL1 [Title/Abstract] AND KRT24 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Most frequent breakpoint | MSL1(38279633)-KRT24(38858185), # samples:2 | ||
| Anticipated loss of major functional domain due to fusion event. | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | MSL1 | GO:0043984 | histone H4-K16 acetylation | 20018852 |
| Fusion gene breakpoints across MSL1 (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene breakpoints across KRT24 (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
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| Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChimerDB4 | STAD | TCGA-D7-8573-01A | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
| ChimerDB4 | STAD | TCGA-D7-8573 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
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Fusion Gene ORF analysis for MSL1-KRT24 |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000579565 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
| In-frame | ENST00000398532 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
| In-frame | ENST00000577454 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
| In-frame | ENST00000578648 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - |
| ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
| ENST00000398532 | MSL1 | chr17 | 38279633 | + | ENST00000264651 | KRT24 | chr17 | 38858185 | - | 2292 | 1083 | 300 | 2045 | 581 |
| ENST00000577454 | MSL1 | chr17 | 38279633 | + | ENST00000264651 | KRT24 | chr17 | 38858185 | - | 2017 | 808 | 25 | 1770 | 581 |
| ENST00000578648 | MSL1 | chr17 | 38279633 | + | ENST00000264651 | KRT24 | chr17 | 38858185 | - | 2006 | 797 | 14 | 1759 | 581 |
| DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
| Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
| ENST00000398532 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - | 0.011654982 | 0.988345 |
| ENST00000577454 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - | 0.010532321 | 0.9894677 |
| ENST00000578648 | ENST00000264651 | MSL1 | chr17 | 38279633 | + | KRT24 | chr17 | 38858185 | - | 0.010541548 | 0.98945844 |
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Fusion Genomic Features for MSL1-KRT24 |
| FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
| Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
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| Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for MSL1-KRT24 |
| Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr17:38279633/chr17:38858185) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
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| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| MSL1 | . |
| FUNCTION: Component of histone acetyltransferase complex responsible for the majority of histone H4 acetylation at 'Lys-16' (H4K16ac) which is implicated in the formation of higher-order chromatin structure (PubMed:16227571). Greatly enhances MSL2 E3 ubiquitin ligase activity, promoting monoubiquitination of histone H2B at 'Lys-34' (H2BK34Ub) (PubMed:21726816). This modification in turn stimulates histone H3 methylation at 'Lys-4' (H3K4me) and 'Lys-79' (H3K79me) and leads to gene activation, including that of HOXA9 and MEIS1 (PubMed:21726816). In the MSL complex, acts as a scaffold to tether MSL3 and KAT8 together for enzymatic activity regulation (PubMed:22547026). {ECO:0000269|PubMed:16227571, ECO:0000269|PubMed:21726816, ECO:0000269|PubMed:22547026}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 10_15 | 256 | 615.0 | Compositional bias | Note=Poly-Ala |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 208_214 | 256 | 615.0 | Compositional bias | Note=Poly-Gly |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 55_185 | 256 | 615.0 | Compositional bias | Note=Pro-rich |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 291_313 | 205 | 526.0 | Region | Note=Linker 12 | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 314_452 | 205 | 526.0 | Region | Note=Coil 2 | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 453_525 | 205 | 526.0 | Region | Note=Tail |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 213_282 | 256 | 615.0 | Coiled coil | Ontology_term=ECO:0000269 |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 213_282 | 0 | 352.0 | Coiled coil | Ontology_term=ECO:0000269 |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 10_15 | 0 | 352.0 | Compositional bias | Note=Poly-Ala |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 208_214 | 0 | 352.0 | Compositional bias | Note=Poly-Gly |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 55_185 | 0 | 352.0 | Compositional bias | Note=Pro-rich |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 317_346 | 256 | 615.0 | Motif | Nuclear localization signal |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 505_519 | 256 | 615.0 | Motif | Bipartite nuclear localization signal |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 317_346 | 0 | 352.0 | Motif | Nuclear localization signal |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 505_519 | 0 | 352.0 | Motif | Bipartite nuclear localization signal |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 13_138 | 205 | 526.0 | Compositional bias | Note=Gly-rich | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 140_456 | 205 | 526.0 | Domain | IF rod | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 140_175 | 205 | 526.0 | Region | Note=Coil 1A | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 176_198 | 205 | 526.0 | Region | Note=Linker 1 | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 199_290 | 205 | 526.0 | Region | Note=Coil 1B | |
| Tgene | KRT24 | chr17:38279633 | chr17:38858185 | ENST00000264651 | 0 | 8 | 1_139 | 205 | 526.0 | Region | Note=Head |
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Fusion Gene Sequence for MSL1-KRT24 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
| >55344_55344_1_MSL1-KRT24_MSL1_chr17_38279633_ENST00000398532_KRT24_chr17_38858185_ENST00000264651_length(transcript)=2292nt_BP=1083nt GAGCTCCGGGGATGAGCTCGGGGGCGGCTGGGTGCGAGCTCCTGCCTCTGAGGCGAAGGCGGCGGCGGCGGCAGCAGAGGCGGCGGCGAG GCCCCCATGGGCCGGCGGCGGGCCTCAGCCGCGGCCTCCACGTCTCCGCACGCCGGCGGGATGGCGCCCGGGCCCCGGAGGAGCCGCGCT AGCGGAGGCCTGCTGCCGCGCTGCTGAGGCGAGCCCGCCAAACTCCCCTCCCCCCCCTCAGTCCTCGACCCCCCGCACCTCGCCCCTTCC CCACCCCCTCCTCCGCCTCGGTGCCCGGCGCTGCTCCGGACCACTATGACCATGAGATCCGCGGTGTTCAAGGCGGCCGCGGCCCCTGCC GGCGGCAATCCTGAGCAGCGACTGGACTACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGCCTGGGGCGGCCGAAGCCCACTTC CTCCCCCGGCACCGTAAGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCCTCCCAGGGCGGGAGCCCCGCGCCTTCCCCGGCCGGCTGCGGC GGCAAGGGCCGGGGCTTGTTACTCCCGGCCGGGGCGGCCCCCGGGCAGCAGGAAGAGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCG CCCCCGGCCACCAAGCAAGCCGGCATTGGGGGGGAGCCTGCCGCAGCCGGAGCCGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTG CCCATTCAGACGGGCTCTCTCGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCCTCCCCCGCTGCCACC GCCTCGGACCCGGCGGGACCCCCACCACTACCTCTGCCCGGGCCGCCACCCCTCGCGCCCACCGCCACCGCCGGGACCCTGGCGGCCAGC GAGGGCAGATGGAAGAGTATGAGGAAGAGCCCTCTCGGGGGTGGTGGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATC CTTCTGCTGCAATTGGACCTCATCGAACAGCAGCAGCAGCAGCTGCAGGCCAAGGAAAAGGAGATCGAGGAGCTGAAGTCAGAGAGAGAC ACGATCATTGCTGCCACTGTTGAAAATGCTGGGATCATTTTGCACATTGACAATGCCAGATTGGCTGCTGATGACTTCAGACTGAAGTAT GAGAACGAGCTGTGTCTCCGGCAGAGCGTGGAGGCTGACATCAATGGCCTGCGGAAAGTCCTGGATGACCTGACTATGACCCGCTCTGAC CTGGAGATGCAGATTGAGAGTTTCACCGAGGAGCTAGCCTACCTGAGGAAGAACCACGAGGAGGAAATGAAGAATATGCAAGGAAGCTCT GGAGGGGAGGTGACCGTAGAAATGAATGCTGCGCCAGGGACCGACCTGACCAAATTACTGAATGACATGAGGGCGCAGTACGAGGAGCTG GCTGAGCAAAACCGCCGAGAGGCTGAGGAGCGGTTCAACAAGCAGAGCGCATCACTACAAGCACAAATCTCCACTGATGCTGGGGCAGCC ACTTCTGCCAAGAATGAGATAACAGAACTAAAACGTACCCTGCAAGCCCTGGAAATTGAGCTTCAGTCCCAACTGGCCATGAAAAGCTCC CTGGAGGGAACCCTGGCTGACACAGAAGCTGGCTACGTGGCTCAGCTGTCAGAAATTCAAACGCAGATCAGTGCCCTGGAGGAGGAGATC TGCCAGATCTGGGGTGAGACTAAATGCCAGAACGCAGAGTACAAGCAATTGCTGGACATCAAGACACGCCTGGAGGTGGAGATCGAGACC TACCGCCGCCTGCTCGATGGAGAGGGAGGTGGTTCTAGTTTTGCAGAATTTGGTGGTAGAAACTCAGGATCTGTAAACATGGGATCCAGG GATCTGGTATCTGGTGACTCAAGATCTGGAAGCTGTTCTGGTCAAGGACGAGATTCAAGCAAGACTAGAGTGACTAAGACTATCGTAGAG GAGTTGGTGGATGGCAAGGTTGTCTCGTCTCAAGTCAGCAGTATTTCTGAGGTGAAAGTTAAATAAGGAACTTCCAGATCAACAAAAGTG TCTTTCAAAGAAAAAAAAATCAAGAAGGACACAAGCGAAGAAATGGCATCAATCTAGGCATCTTTCTGGATAATTTCAGGAAAAGCTTCA GTCCAGAAATGGATGACTAGCCAACTTTTCTGCATCTTCTTATTTCCTCATTAGAATGCTCTTGAAATAGCTGAATTAACAACTTTGCTT >55344_55344_1_MSL1-KRT24_MSL1_chr17_38279633_ENST00000398532_KRT24_chr17_38858185_ENST00000264651_length(amino acids)=581AA_BP=248 MLRTTMTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDEPGAAEAHFLPRHRKLKEPGPPLASSQGGSPAPSPAGCGGKGRGLLLPA GAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPAAAGAGCSPRPKYQAVLPIQTGSLVAAAKEPTPWAGDKGGAASPAATASDPAGPPPL PLPGPPPLAPTATAGTLAASEGRWKSMRKSPLGGGGGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDTIIAATVENA GIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNA APGTDLTKLLNDMRAQYEELAEQNRREAEERFNKQSASLQAQISTDAGAATSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEA GYVAQLSEIQTQISALEEEICQIWGETKCQNAEYKQLLDIKTRLEVEIETYRRLLDGEGGGSSFAEFGGRNSGSVNMGSRDLVSGDSRSG -------------------------------------------------------------- >55344_55344_2_MSL1-KRT24_MSL1_chr17_38279633_ENST00000577454_KRT24_chr17_38858185_ENST00000264651_length(transcript)=2017nt_BP=808nt CCCTCCTCCGCCTCGGTGCCCGGCGCTGCTCCGGACCACTATGACCATGAGATCCGCGGTGTTCAAGGCGGCCGCGGCCCCTGCCGGCGG CAATCCTGAGCAGCGACTGGACTACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGCCTGGGGCGGCCGAAGCCCACTTCCTCCC CCGGCACCGTAAGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCCTCCCAGGGCGGGAGCCCCGCGCCTTCCCCGGCCGGCTGCGGCGGCAA GGGCCGGGGCTTGTTACTCCCGGCCGGGGCGGCCCCCGGGCAGCAGGAAGAGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCGCCCCC GGCCACCAAGCAAGCCGGCATTGGGGGGGAGCCTGCCGCAGCCGGAGCCGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTGCCCAT TCAGACGGGCTCTCTCGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCCTCCCCCGCTGCCACCGCCTC GGACCCGGCGGGACCCCCACCACTACCTCTGCCCGGGCCGCCACCCCTCGCGCCCACCGCCACCGCCGGGACCCTGGCGGCCAGCGAGGG CAGATGGAAGAGTATGAGGAAGAGCCCTCTCGGGGGTGGTGGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCT GCTGCAATTGGACCTCATCGAACAGCAGCAGCAGCAGCTGCAGGCCAAGGAAAAGGAGATCGAGGAGCTGAAGTCAGAGAGAGACACGAT CATTGCTGCCACTGTTGAAAATGCTGGGATCATTTTGCACATTGACAATGCCAGATTGGCTGCTGATGACTTCAGACTGAAGTATGAGAA CGAGCTGTGTCTCCGGCAGAGCGTGGAGGCTGACATCAATGGCCTGCGGAAAGTCCTGGATGACCTGACTATGACCCGCTCTGACCTGGA GATGCAGATTGAGAGTTTCACCGAGGAGCTAGCCTACCTGAGGAAGAACCACGAGGAGGAAATGAAGAATATGCAAGGAAGCTCTGGAGG GGAGGTGACCGTAGAAATGAATGCTGCGCCAGGGACCGACCTGACCAAATTACTGAATGACATGAGGGCGCAGTACGAGGAGCTGGCTGA GCAAAACCGCCGAGAGGCTGAGGAGCGGTTCAACAAGCAGAGCGCATCACTACAAGCACAAATCTCCACTGATGCTGGGGCAGCCACTTC TGCCAAGAATGAGATAACAGAACTAAAACGTACCCTGCAAGCCCTGGAAATTGAGCTTCAGTCCCAACTGGCCATGAAAAGCTCCCTGGA GGGAACCCTGGCTGACACAGAAGCTGGCTACGTGGCTCAGCTGTCAGAAATTCAAACGCAGATCAGTGCCCTGGAGGAGGAGATCTGCCA GATCTGGGGTGAGACTAAATGCCAGAACGCAGAGTACAAGCAATTGCTGGACATCAAGACACGCCTGGAGGTGGAGATCGAGACCTACCG CCGCCTGCTCGATGGAGAGGGAGGTGGTTCTAGTTTTGCAGAATTTGGTGGTAGAAACTCAGGATCTGTAAACATGGGATCCAGGGATCT GGTATCTGGTGACTCAAGATCTGGAAGCTGTTCTGGTCAAGGACGAGATTCAAGCAAGACTAGAGTGACTAAGACTATCGTAGAGGAGTT GGTGGATGGCAAGGTTGTCTCGTCTCAAGTCAGCAGTATTTCTGAGGTGAAAGTTAAATAAGGAACTTCCAGATCAACAAAAGTGTCTTT CAAAGAAAAAAAAATCAAGAAGGACACAAGCGAAGAAATGGCATCAATCTAGGCATCTTTCTGGATAATTTCAGGAAAAGCTTCAGTCCA GAAATGGATGACTAGCCAACTTTTCTGCATCTTCTTATTTCCTCATTAGAATGCTCTTGAAATAGCTGAATTAACAACTTTGCTTTAATT >55344_55344_2_MSL1-KRT24_MSL1_chr17_38279633_ENST00000577454_KRT24_chr17_38858185_ENST00000264651_length(amino acids)=581AA_BP=248 MLRTTMTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDEPGAAEAHFLPRHRKLKEPGPPLASSQGGSPAPSPAGCGGKGRGLLLPA GAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPAAAGAGCSPRPKYQAVLPIQTGSLVAAAKEPTPWAGDKGGAASPAATASDPAGPPPL PLPGPPPLAPTATAGTLAASEGRWKSMRKSPLGGGGGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDTIIAATVENA GIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNA APGTDLTKLLNDMRAQYEELAEQNRREAEERFNKQSASLQAQISTDAGAATSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEA GYVAQLSEIQTQISALEEEICQIWGETKCQNAEYKQLLDIKTRLEVEIETYRRLLDGEGGGSSFAEFGGRNSGSVNMGSRDLVSGDSRSG -------------------------------------------------------------- >55344_55344_3_MSL1-KRT24_MSL1_chr17_38279633_ENST00000578648_KRT24_chr17_38858185_ENST00000264651_length(transcript)=2006nt_BP=797nt CTCGGTGCCCGGCGCTGCTCCGGACCACTATGACCATGAGATCCGCGGTGTTCAAGGCGGCCGCGGCCCCTGCCGGCGGCAATCCTGAGC AGCGACTGGACTACGAGCGGGCTGCGGCGCTGGGCGGGCCCGAGGACGAGCCTGGGGCGGCCGAAGCCCACTTCCTCCCCCGGCACCGTA AGCTCAAGGAGCCGGGGCCCCCGCTGGCCTCCTCCCAGGGCGGGAGCCCCGCGCCTTCCCCGGCCGGCTGCGGCGGCAAGGGCCGGGGCT TGTTACTCCCGGCCGGGGCGGCCCCCGGGCAGCAGGAAGAGAGCTGGGGCGGTTCGGTGCCCTTGCCCTGTCCGCCCCCGGCCACCAAGC AAGCCGGCATTGGGGGGGAGCCTGCCGCAGCCGGAGCCGGCTGCAGCCCCCGGCCCAAGTATCAGGCGGTGCTGCCCATTCAGACGGGCT CTCTCGTGGCGGCGGCCAAAGAGCCTACGCCCTGGGCTGGGGACAAGGGTGGGGCGGCCTCCCCCGCTGCCACCGCCTCGGACCCGGCGG GACCCCCACCACTACCTCTGCCCGGGCCGCCACCCCTCGCGCCCACCGCCACCGCCGGGACCCTGGCGGCCAGCGAGGGCAGATGGAAGA GTATGAGGAAGAGCCCTCTCGGGGGTGGTGGCGGCTCGGGAGCCTCCAGTCAGGCCGCCTGCCTCAAACAGATCCTTCTGCTGCAATTGG ACCTCATCGAACAGCAGCAGCAGCAGCTGCAGGCCAAGGAAAAGGAGATCGAGGAGCTGAAGTCAGAGAGAGACACGATCATTGCTGCCA CTGTTGAAAATGCTGGGATCATTTTGCACATTGACAATGCCAGATTGGCTGCTGATGACTTCAGACTGAAGTATGAGAACGAGCTGTGTC TCCGGCAGAGCGTGGAGGCTGACATCAATGGCCTGCGGAAAGTCCTGGATGACCTGACTATGACCCGCTCTGACCTGGAGATGCAGATTG AGAGTTTCACCGAGGAGCTAGCCTACCTGAGGAAGAACCACGAGGAGGAAATGAAGAATATGCAAGGAAGCTCTGGAGGGGAGGTGACCG TAGAAATGAATGCTGCGCCAGGGACCGACCTGACCAAATTACTGAATGACATGAGGGCGCAGTACGAGGAGCTGGCTGAGCAAAACCGCC GAGAGGCTGAGGAGCGGTTCAACAAGCAGAGCGCATCACTACAAGCACAAATCTCCACTGATGCTGGGGCAGCCACTTCTGCCAAGAATG AGATAACAGAACTAAAACGTACCCTGCAAGCCCTGGAAATTGAGCTTCAGTCCCAACTGGCCATGAAAAGCTCCCTGGAGGGAACCCTGG CTGACACAGAAGCTGGCTACGTGGCTCAGCTGTCAGAAATTCAAACGCAGATCAGTGCCCTGGAGGAGGAGATCTGCCAGATCTGGGGTG AGACTAAATGCCAGAACGCAGAGTACAAGCAATTGCTGGACATCAAGACACGCCTGGAGGTGGAGATCGAGACCTACCGCCGCCTGCTCG ATGGAGAGGGAGGTGGTTCTAGTTTTGCAGAATTTGGTGGTAGAAACTCAGGATCTGTAAACATGGGATCCAGGGATCTGGTATCTGGTG ACTCAAGATCTGGAAGCTGTTCTGGTCAAGGACGAGATTCAAGCAAGACTAGAGTGACTAAGACTATCGTAGAGGAGTTGGTGGATGGCA AGGTTGTCTCGTCTCAAGTCAGCAGTATTTCTGAGGTGAAAGTTAAATAAGGAACTTCCAGATCAACAAAAGTGTCTTTCAAAGAAAAAA AAATCAAGAAGGACACAAGCGAAGAAATGGCATCAATCTAGGCATCTTTCTGGATAATTTCAGGAAAAGCTTCAGTCCAGAAATGGATGA CTAGCCAACTTTTCTGCATCTTCTTATTTCCTCATTAGAATGCTCTTGAAATAGCTGAATTAACAACTTTGCTTTAATTGTTTCTATGCT >55344_55344_3_MSL1-KRT24_MSL1_chr17_38279633_ENST00000578648_KRT24_chr17_38858185_ENST00000264651_length(amino acids)=581AA_BP=248 MLRTTMTMRSAVFKAAAAPAGGNPEQRLDYERAAALGGPEDEPGAAEAHFLPRHRKLKEPGPPLASSQGGSPAPSPAGCGGKGRGLLLPA GAAPGQQEESWGGSVPLPCPPPATKQAGIGGEPAAAGAGCSPRPKYQAVLPIQTGSLVAAAKEPTPWAGDKGGAASPAATASDPAGPPPL PLPGPPPLAPTATAGTLAASEGRWKSMRKSPLGGGGGSGASSQAACLKQILLLQLDLIEQQQQQLQAKEKEIEELKSERDTIIAATVENA GIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNA APGTDLTKLLNDMRAQYEELAEQNRREAEERFNKQSASLQAQISTDAGAATSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEA GYVAQLSEIQTQISALEEEICQIWGETKCQNAEYKQLLDIKTRLEVEIETYRRLLDGEGGGSSFAEFGGRNSGSVNMGSRDLVSGDSRSG -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for MSL1-KRT24 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 223_237 | 256.0 | 615.0 | MSL2 |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000398532 | + | 1 | 9 | 498_518 | 256.0 | 615.0 | KAT8 |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 498_518 | 0 | 352.0 | KAT8 |
| Hgene | MSL1 | chr17:38279633 | chr17:38858185 | ENST00000579565 | + | 2 | 10 | 223_237 | 0 | 352.0 | MSL2 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for MSL1-KRT24 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for MSL1-KRT24 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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