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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:MYBPC1-NPY (FusionGDB2 ID:56188)

Fusion Gene Summary for MYBPC1-NPY

check button Fusion gene summary
Fusion gene informationFusion gene name: MYBPC1-NPY
Fusion gene ID: 56188
HgeneTgene
Gene symbol

MYBPC1

NPY

Gene ID

4604

4852

Gene namemyosin binding protein C1neuropeptide Y
SynonymsLCCS4|MYBPCC|MYBPCS|MYOTREM|ssMyBP-CPYY4
Cytomap

12q23.2

7p15.3

Type of geneprotein-codingprotein-coding
Descriptionmyosin-binding protein C, slow-typeC-protein, skeletal muscle slow isoformmyosin binding protein C, slow typeskeletal muscle C-proteinslow MyBP-Cslow skeletal-type muscle myosin-binding-protein Cpro-neuropeptide Yprepro-neuropeptide Y
Modification date2020032020200313
UniProtAcc

Q00872

Q99463

Ensembl transtripts involved in fusion geneENST00000360610, ENST00000361466, 
ENST00000361685, ENST00000392934, 
ENST00000441232, ENST00000452455, 
ENST00000536007, ENST00000541119, 
ENST00000545503, ENST00000547405, 
ENST00000547509, ENST00000549145, 
ENST00000550270, ENST00000551300, 
ENST00000553190, ENST00000550501, 
ENST00000242152, ENST00000407573, 
ENST00000405982, 
Fusion gene scores* DoF score9 X 9 X 4=3246 X 8 X 4=192
# samples 97
** MAII scorelog2(9/324*10)=-1.84799690655495
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0		log2(7/192*10)=-1.45567948377619
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: MYBPC1 [Title/Abstract] AND NPY [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointMYBPC1(102025497)-NPY(24323807), # samples:1
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across MYBPC1 (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across NPY (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4PRADTCGA-HC-7752-01AMYBPC1chr12

102025497

-NPYchr7

24323807

+


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Fusion Gene ORF analysis for MYBPC1-NPY

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-5UTRENST00000360610ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000360610ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000361466ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000361466ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000361685ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000361685ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000392934ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000392934ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000441232ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000441232ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000452455ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000452455ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000536007ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000536007ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000541119ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000541119ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000545503ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000545503ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000547405ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000547405ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000547509ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000547509ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000549145ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000549145ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000550270ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000550270ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000551300ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000551300ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000553190ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-5UTRENST00000553190ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000360610ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000361466ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000361685ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000392934ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000441232ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000452455ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000536007ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000541119ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000545503ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000547405ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000547509ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000549145ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000550270ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000551300ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
5CDS-intronENST00000553190ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+
intron-5UTRENST00000550501ENST00000242152MYBPC1chr12

102025497

-NPYchr7

24323807

+
intron-5UTRENST00000550501ENST00000407573MYBPC1chr12

102025497

-NPYchr7

24323807

+
intron-intronENST00000550501ENST00000405982MYBPC1chr12

102025497

-NPYchr7

24323807

+

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)		BP loci
(transcript)		Predicted start
(transcript)		Predicted stop
(transcript)		Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for MYBPC1-NPY


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for MYBPC1-NPY


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:102025497/:24323807)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
MYBPC1

Q00872

NPY

Q99463

FUNCTION: Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. Slow skeletal protein that binds to both myosin and actin (PubMed:31264822, PubMed:31025394). In vitro, binds to native thin filaments and modifies the activity of actin-activated myosin ATPase. May modulate muscle contraction or may play a more structural role. {ECO:0000269|PubMed:31025394, ECO:0000269|PubMed:31264822}.FUNCTION: When expressed, is unable to bind pancreatic polypeptide (PP), neuropeptide Y (NPY), or peptide YY (PYY), suggesting that either it is functionally inactive or that it may have acquired a pancreatic polypeptide-independent function. {ECO:0000269|PubMed:8910290, ECO:0000269|PubMed:8910373}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for MYBPC1-NPY


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for MYBPC1-NPY


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for MYBPC1-NPY


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for MYBPC1-NPY


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource