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Center for Computational Systems Medicine
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Fusion Gene Summary

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Fusion Gene ORF analysis

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Fusion Genomic Features

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Fusion Protein Features

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Fusion Gene Sequence

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Fusion Gene PPI analysis

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Related Drugs

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Related Diseases

Fusion gene:NFASC-LRRN2 (FusionGDB2 ID:58742)

Fusion Gene Summary for NFASC-LRRN2

check button Fusion gene summary
Fusion gene informationFusion gene name: NFASC-LRRN2
Fusion gene ID: 58742
HgeneTgene
Gene symbol

NFASC

LRRN2

Gene ID

23114

10446

Gene nameneurofascinleucine rich repeat neuronal 2
SynonymsNEDCPMD|NF|NRCAMLFIGLER7|GAC1|LRANK1|LRRN5
Cytomap

1q32.1

1q32.1

Type of geneprotein-codingprotein-coding
Descriptionneurofascinneurofascin homologneurofascin isoform 140leucine-rich repeat neuronal protein 2fibronectin type III, immunoglobulin and leucine rich repeat domain 7glioma amplified on chromosome 1 proteinleucine rich and ankyrin repeats 1leucine rich repeat neuronal 5leucine-rich repeat neuronal protein 5
Modification date2020031320200313
UniProtAcc

O94856

O75325

Ensembl transtripts involved in fusion geneENST00000338515, ENST00000338586, 
ENST00000339876, ENST00000360049, 
ENST00000367169, ENST00000367170, 
ENST00000367171, ENST00000367172, 
ENST00000403080, ENST00000539706, 
ENST00000401399, ENST00000404076, 
ENST00000404907, ENST00000495396, 
ENST00000513543, 
ENST00000367175, 
ENST00000367176, ENST00000367177, 
ENST00000496057, 
Fusion gene scores* DoF score16 X 10 X 4=6405 X 3 X 7=105
# samples 218
** MAII scorelog2(21/640*10)=-1.60768257722124
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/105*10)=-0.39231742277876
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: NFASC [Title/Abstract] AND LRRN2 [Title/Abstract] AND fusion [Title/Abstract]

Most frequent breakpointNFASC(204797910)-LRRN2(204589346), # samples:4
Anticipated loss of major functional domain due to fusion event.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check buttonFusion gene breakpoints across NFASC (5'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check buttonFusion gene breakpoints across LRRN2 (3'-gene)
* Click on the image to open the UCSC genome browser with custom track showing this image in a new window.

check button Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0)
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
SourceDiseaseSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChimerDB4GBMTCGA-27-1834-01ANFASCchr1

204797910

-LRRN2chr1

204589346

-
ChimerDB4GBMTCGA-27-1834-01ANFASCchr1

204797910

+LRRN2chr1

204589346

-
ChimerDB4GBMTCGA-27-1834-01ANFASCchr1

204797910

+LRRN2chr1

204602374

-
ChimerDB4GBMTCGA-27-1834NFASCchr1

204797910

+LRRN2chr1

204589346

-


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Fusion Gene ORF analysis for NFASC-LRRN2

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-5UTRENST00000338515ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338515ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338515ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338515ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338515ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000338586ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338586ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338586ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338586ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000338586ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000339876ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000339876ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000339876ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000339876ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000339876ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000360049ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000360049ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000360049ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000360049ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000360049ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000367169ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367169ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367169ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367169ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367169ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000367170ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367170ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367170ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367170ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367170ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000367171ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367171ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367171ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367171ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367171ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000367172ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367172ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367172ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367172ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000367172ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000403080ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000403080ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000403080ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000403080ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000403080ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-5UTRENST00000539706ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000539706ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000539706ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000539706ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
5UTR-5UTRENST00000539706ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338515ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338515ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338515ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338586ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338586ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000338586ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000339876ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000339876ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000339876ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000360049ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000360049ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000360049ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367169ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367169ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367169ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367170ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367170ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367170ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367171ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367171ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367171ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367172ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367172ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000367172ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000403080ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000403080ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000403080ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000539706ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000539706ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
5UTR-intronENST00000539706ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-5UTRENST00000401399ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000401399ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000401399ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000401399ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000401399ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-5UTRENST00000404076ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404076ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404076ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404076ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404076ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-5UTRENST00000404907ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404907ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404907ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404907ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000404907ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-5UTRENST00000495396ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000495396ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000495396ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000495396ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000495396ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-5UTRENST00000513543ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000513543ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000513543ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000513543ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204589346

-
intron-5UTRENST00000513543ENST00000496057NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000401399ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000401399ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000401399ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404076ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404076ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404076ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404907ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404907ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000404907ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000495396ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000495396ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000495396ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000513543ENST00000367175NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000513543ENST00000367176NFASCchr1

204797910

+LRRN2chr1

204602374

-
intron-intronENST00000513543ENST00000367177NFASCchr1

204797910

+LRRN2chr1

204602374

-

check buttonORFfinder result based on the fusion transcript sequence of in-frame fusion genes.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandSeq length
(transcript)
BP loci
(transcript)
Predicted start
(transcript)
Predicted stop
(transcript)
Seq length
(amino acids)

check buttonDeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated.
HenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrandNo-coding scoreCoding score

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Fusion Genomic Features for NFASC-LRRN2


check buttonFusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints.
HgeneHchrHbpHstrandTgeneTchrTbpTstrand1-pp (fusion gene breakpoint)

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page.

check buttonDistribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page.

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Fusion Protein Features for NFASC-LRRN2


check button Four levels of functional features of fusion genes
Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/:204797910/:204589346)
- FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels.
- How to search
1. Put your fusion gene symbol.
2. Press the tab key until there will be shown the breakpoint information filled.
4. Go down and press 'Search' tab twice.
4. Go down to have the hyperlink of the search result.
5. Click the hyperlink.
6. See the FGviewer result for your fusion gene.
FGviewer

check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
NFASC

O94856

LRRN2

O75325

FUNCTION: Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions. {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page


* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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Fusion Gene Sequence for NFASC-LRRN2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones.

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Fusion Gene PPI Analysis for NFASC-LRRN2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page.


check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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Related Drugs for NFASC-LRRN2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.8 2021-05-08)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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Related Diseases for NFASC-LRRN2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource