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Fusion Gene Summary | |
Fusion Gene ORF analysis | |
Fusion Genomic Features | |
Fusion Protein Features | |
Fusion Gene Sequence | |
Fusion Gene PPI analysis | |
Related Drugs | |
Related Diseases |
Fusion gene:NFIX-RNASEH2A (FusionGDB2 ID:58959) |
Fusion Gene Summary for NFIX-RNASEH2A |
Fusion gene summary |
Fusion gene information | Fusion gene name: NFIX-RNASEH2A | Fusion gene ID: 58959 | Hgene | Tgene | Gene symbol | NFIX | RNASEH2A | Gene ID | 4784 | 10535 |
Gene name | nuclear factor I X | ribonuclease H2 subunit A | |
Synonyms | CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 | AGS4|JUNB|RNASEHI|RNHIA|RNHL|THSD8 | |
Cytomap | 19p13.13 | 19p13.13 | |
Type of gene | protein-coding | protein-coding | |
Description | nuclear factor 1 X-typeCCAAT-box-binding transcription factorTGGCA-binding proteinnuclear factor 1/X | ribonuclease H2 subunit ARNase H(35)RNase H2 subunit ARNase HI large subunitaicardi-Goutieres syndrome 4 proteinribonuclease H2, large subunitribonuclease HI large subunitribonuclease HI subunit A | |
Modification date | 20200329 | 20200313 | |
UniProtAcc | . | . | |
Ensembl transtripts involved in fusion gene | ENST00000358552, ENST00000360105, ENST00000397661, ENST00000585575, ENST00000587260, ENST00000587760, ENST00000588228, ENST00000592199, ENST00000588680, | ENST00000221486, | |
Fusion gene scores | * DoF score | 27 X 14 X 16=6048 | 6 X 6 X 4=144 |
# samples | 42 | 8 | |
** MAII score | log2(42/6048*10)=-3.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/144*10)=-0.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: NFIX [Title/Abstract] AND RNASEH2A [Title/Abstract] AND fusion [Title/Abstract] | ||
Most frequent breakpoint | NFIX(13136366)-RNASEH2A(12917821), # samples:1 | ||
Anticipated loss of major functional domain due to fusion event. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | NFIX | GO:0000122 | negative regulation of transcription by RNA polymerase II | 19706729 |
Hgene | NFIX | GO:0045944 | positive regulation of transcription by RNA polymerase II | 19706729 |
Tgene | RNASEH2A | GO:0006298 | mismatch repair | 23603115 |
Tgene | RNASEH2A | GO:0006401 | RNA catabolic process | 21177858 |
Fusion gene breakpoints across NFIX (5'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene breakpoints across RNASEH2A (3'-gene) * Click on the image to open the UCSC genome browser with custom track showing this image in a new window. |
Fusion gene information from two resources (ChiTars 5.0 and ChimerDB 4.0) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Source | Disease | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChimerDB4 | ESCA | TCGA-R6-A8W5 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
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Fusion Gene ORF analysis for NFIX-RNASEH2A |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000358552 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000360105 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000397661 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000585575 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000587260 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000587760 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000588228 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
In-frame | ENST00000592199 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
intron-3CDS | ENST00000588680 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + |
ORFfinder result based on the fusion transcript sequence of in-frame fusion genes. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | Seq length (transcript) | BP loci (transcript) | Predicted start (transcript) | Predicted stop (transcript) | Seq length (amino acids) |
ENST00000397661 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1733 | 789 | 173 | 1561 | 462 |
ENST00000592199 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1503 | 559 | 0 | 1331 | 443 |
ENST00000587760 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1520 | 576 | 14 | 1348 | 444 |
ENST00000585575 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1479 | 535 | 0 | 1307 | 435 |
ENST00000360105 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1577 | 633 | 65 | 1405 | 446 |
ENST00000588228 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1580 | 636 | 53 | 1408 | 451 |
ENST00000587260 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1558 | 614 | 58 | 1386 | 442 |
ENST00000358552 | NFIX | chr19 | 13136366 | + | ENST00000221486 | RNASEH2A | chr19 | 12917821 | + | 1500 | 556 | 0 | 1328 | 442 |
DeepORF prediction of the coding potential based on the fusion transcript sequence of in-frame fusion genes. DeepORF is a coding potential classifier based on convolutional neural network by comparing the real Ribo-seq data. If the no-coding score < 0.5 and coding score > 0.5, then the in-frame fusion transcript is predicted as being likely translated. |
Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | No-coding score | Coding score |
ENST00000397661 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.004270403 | 0.9957296 |
ENST00000592199 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.002961051 | 0.99703896 |
ENST00000587760 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.001677485 | 0.99832255 |
ENST00000585575 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.001641621 | 0.9983583 |
ENST00000360105 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.004464625 | 0.9955354 |
ENST00000588228 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.003611827 | 0.9963882 |
ENST00000587260 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.003465333 | 0.9965347 |
ENST00000358552 | ENST00000221486 | NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 0.003013637 | 0.9969863 |
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Fusion Genomic Features for NFIX-RNASEH2A |
FusionAI prediction of the potential fusion gene breakpoint based on the pre-mature RNA sequence context (+/- 5kb of individual partner genes, total 20kb length sequence). FusionAI is a fusion gene breakpoint classifier based on convolutional neural network by comparing the fusion positive and negative sequence context of ~ 20K fusion gene data. From here, we can have the relative potentency of the 20K genomic sequence how individual sequnce will be likely used as the gene fusion breakpoints. |
Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand | 1-p | p (fusion gene breakpoint) |
NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 5.20E-05 | 0.999948 |
NFIX | chr19 | 13136366 | + | RNASEH2A | chr19 | 12917821 | + | 5.20E-05 | 0.999948 |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions. We integrated a total of 44 different types of human genomic feature loci information across five big categories including virus integration sites, repeats, structural variants, chromatin states, and gene expression regulation. More details are in help page. |
Distribution of 44 human genomic features loci across 20kb length fusion breakpoint regions that are ovelapped with the top 1% feature importance score regions. More details are in help page. |
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Fusion Protein Features for NFIX-RNASEH2A |
Four levels of functional features of fusion genes Go to FGviewer search page for the most frequent breakpoint (https://ccsmweb.uth.edu/FGviewer/chr19:13136366/chr19:12917821) - FGviewer provides the online visualization of the retention search of the protein functional features across DNA, RNA, protein, and pathological levels. - How to search 1. Put your fusion gene symbol. 2. Press the tab key until there will be shown the breakpoint information filled. 4. Go down and press 'Search' tab twice. 4. Go down to have the hyperlink of the search result. 5. Click the hyperlink. 6. See the FGviewer result for your fusion gene. |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
. | . |
FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. | FUNCTION: Transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons. Recruits CREB-binding protein (CREBBP) to nuclear bodies. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC1 repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). {ECO:0000250}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000397661 | + | 2 | 10 | 1_194 | 186 | 878.6666666666666 | DNA binding | CTF/NF-I |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000585575 | + | 2 | 11 | 1_194 | 178 | 495.0 | DNA binding | CTF/NF-I |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000587260 | + | 1 | 9 | 1_194 | 185 | 281.6666666666667 | DNA binding | CTF/NF-I |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000587760 | + | 2 | 10 | 1_194 | 178 | 460.6666666666667 | DNA binding | CTF/NF-I |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000592199 | + | 2 | 11 | 1_194 | 186 | 503.0 | DNA binding | CTF/NF-I |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000397661 | + | 2 | 10 | 398_406 | 186 | 878.6666666666666 | Motif | 9aaTAD |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000585575 | + | 2 | 11 | 398_406 | 178 | 495.0 | Motif | 9aaTAD |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000587260 | + | 1 | 9 | 398_406 | 185 | 281.6666666666667 | Motif | 9aaTAD |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000587760 | + | 2 | 10 | 398_406 | 178 | 460.6666666666667 | Motif | 9aaTAD |
Hgene | NFIX | chr19:13136366 | chr19:12917821 | ENST00000592199 | + | 2 | 11 | 398_406 | 186 | 503.0 | Motif | 9aaTAD |
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Fusion Gene Sequence for NFIX-RNASEH2A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. To have fusion amino acid sequence, we ran ORFfinder and chose the longest ORF among the all predicted ones. |
>58959_58959_1_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000358552_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1500nt_BP=556nt ATGCTCCCGGCTTGCCGCCTGCAGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTC AACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTG GGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTC GTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGC CAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTAC AAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTAC TTTGTCCACACTCCGGGCCCCATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGAC TCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCT CCAAACCTCATCTCTACCAGCATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTAT GCATTGGACCAGGGCGTGAACGTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTT CCCGGGATTGAGGTGACGGTCAAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGAC CAGGCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAA GCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAA GAGGCGGAAGATGTTATATGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCC CAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTA CCTGCTTCCCCAACCCAGACATTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGC >58959_58959_1_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000358552_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=442AA_BP=184 MLPACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDF VLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY FVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQY ALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTK -------------------------------------------------------------- >58959_58959_2_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000360105_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1577nt_BP=633nt CAGACGGACACTGTGCCGGGGCGAGCTGACAGGAGTTCACGGCTGCGATAGAACATGGAGATGTCATGGGCGCGACAGAGCCTGGCGGGG ATACCAGCAGCGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGGCGC GGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCG AGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCA CGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGG TGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGT GCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTC CGGGCCCCATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGACTCAAAGACCCTAT TGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCT CTACCAGCATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGG GCGTGAACGTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTCCCGGGATTGAGG TGACGGTCAAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGACCAGGCCGTGAAGA AATGGCAGTTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGG AGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGATG TTATATGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCC GTTCTTCCCACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTACCTGCTTCCCCAA CCCAGACATTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGCTCTGCAGCCGGGT >58959_58959_2_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000360105_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=446AA_BP=188 MGATEPGGDTSSDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEF REDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDL YLAYFVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATG LIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPND -------------------------------------------------------------- >58959_58959_3_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000397661_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1733nt_BP=789nt GCGAGCGCGGCGGCGGCGGCGGCAGCGGCGGCCCCGGAGCCGGCGGGGCCGAGCTTGCGAGCGGCGAGCGCGGAGCGGCGCCGGGCCGAG CGCGGGGCCGCGGGCCGGGCGGGCGCAGCGCGGCGGAGGCCGGAGGAGCCGAGCCGGAGCCCGAGCCCGAGCGCGGCCGCCGCCTGCCGG GCCTCCCCTCGCCGCGGCCGGCCGCCGCGCTCCCGCCCGGGCGCCCAGCTATGTACTCCCCGTACTGCCTCACCCAGGATGAGTTCCACC CGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGC ATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCCC GGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCG TGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGG TGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCC AGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGGGCCCCATGGTCTACGCCATCT GTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGACTCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGT TTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGCATGCTTGGGCGGGTCA AATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAGGTATTCG TGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTCCCGGGATTGAGGTGACGGTCAAGGCCAAAGCAGATG CCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGACCAGGCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGC AGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCT TCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGATGTTATATGGGAGGACTCAGCATCCG AGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGG AACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTACCTGCTTCCCCAACCCAGACATTAAAATTGTTTAAGG AGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGCTCTGCAGCCGGGTCCAGCTACTTCCTTTTGGAACCTT >58959_58959_3_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000397661_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=462AA_BP=204 MPGLPSPRPAAALPPGRPAMYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKW ASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGL CVQPHHIGVTIKELDLYLAYFVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLG RVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVE KLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRY -------------------------------------------------------------- >58959_58959_4_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000585575_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1479nt_BP=535nt ATGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGC AAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCGAGATCAAG CAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAG AAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGG CTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAAC CCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGGGCCCC ATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGACTCAAAGACCCTATTGGAGAGC GAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGC ATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAAC GTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTCCCGGGATTGAGGTGACGGTC AAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGACCAGGCCGTGAAGAAATGGCAG TTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTG GAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGATGTTATATGG GAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCC CACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTACCTGCTTCCCCAACCCAGACA TTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGCTCTGCAGCCGGGTCCAGCTAC >58959_58959_4_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000585575_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=435AA_BP=177 MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGK KPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPGP MVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVN VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHV -------------------------------------------------------------- >58959_58959_5_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000587260_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1558nt_BP=614nt TCCTTCTCTCTTTCCCCCTCATCCCGTCTTCCCCTCCTCCCGTCCTCCCTCGCCCCGCATGCTCCCGGCTTGCCGCCTGCAGGATGAGTT CCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAA GAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGC ATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTG CTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGT CATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTG CGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGGGCCCCATGGTCTACGC CATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGACTCAAAGACCCTATTGGAGAGCGAGCGGGAAAG GCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGCATGCTTGGGCG GGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAGGT ATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTCCCGGGATTGAGGTGACGGTCAAGGCCAAAGC AGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGACCAGGCCGTGAAGAAATGGCAGTTCGTGGAGAA ACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTT CGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAGATGTTATATGGGAGGACTCAGC ATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCCCACCGATATTT CCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTACCTGCTTCCCCAACCCAGACATTAAAATTGTT TAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGCTCTGCAGCCGGGTCCAGCTACTTCCTTTTGGA >58959_58959_5_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000587260_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=442AA_BP=184 MLPACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDF VLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY FVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQY ALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTK -------------------------------------------------------------- >58959_58959_6_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000587760_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1520nt_BP=576nt CTCAGAATCGGGCGTTGGGCTTTGCCGGGTGCTTCAGATCAATGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCG CTTTCTCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGG CGGTGAAGGACGAGCTGCTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGC CCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCC GGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTA CTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAAC TGGATCTTTATCTGGCTTACTTTGTCCACACTCCGGGCCCCATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGG AGGCGCTGAAAGTGGCAGACTCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCT GGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGCATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAG CCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGG CGCGGCTGCAGCAAAGTTTTCCCGGGATTGAGGTGACGGTCAAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCT GTGCCAAGGTGGCCCGGGACCAGGCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACC CCAATGATCCCAAGACAAAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGG CCCAGACCATCCTGGAGAAAGAGGCGGAAGATGTTATATGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCT ACTTCCTCAATGAAGGGTCCCAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGC AGCTGCCTCTACGCGCTCTACCTGCTTCCCCAACCCAGACATTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACA >58959_58959_6_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000587760_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=444AA_BP=186 MGFAGCFRSMDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFRE DFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYL AYFVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPK -------------------------------------------------------------- >58959_58959_7_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000588228_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1580nt_BP=636nt AGACGGACACTGTGCCGGGGCGAGCTGACAGGAGTTCACGGCTGCGATAGAACATGGAGATGTCATGGGCGCGACAGAGCCTGGCGGGGA TACCAGCAGCGTGTGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTTCAACCTGCAGG CGCGGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTGCTGGGCGAGAAGC CCGAGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCA TCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACA AGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTC AGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACA CTCCGGGCCCCATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCAGACTCAAAGACCC TATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCA TCTCTACCAGCATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACC AGGGCGTGAACGTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGTTTTCCCGGGATTG AGGTGACGGTCAAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGGGACCAGGCCGTGA AGAAATGGCAGTTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACAAAAGCGTGGTTGA AGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAGAAAGAGGCGGAAG ATGTTATATGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGGTCCCAAGCCCGTC CCCGTTCTTCCCACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCTCTACCTGCTTCCC CAACCCAGACATTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTGTGCTCTGCAGCCG >58959_58959_7_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000588228_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=451AA_BP=193 MEMSWARQSLAGIPAACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKD IRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTI KELDLYLAYFVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSH DTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGS GYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRKITSYFLNEGSQARPRSSHRYFLERGLESATS -------------------------------------------------------------- >58959_58959_8_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000592199_RNASEH2A_chr19_12917821_ENST00000221486_length(transcript)=1503nt_BP=559nt ATGTACTCCCCGTACTGCCTCACCCAGGATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGG TTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCATGAAAAGCGGATGTCGAAGGACGAGGAGCGGGCGGTGAAGGACGAGCTG CTGGGCGAGAAGCCCGAGATCAAGCAGAAGTGGGCATCCCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTTCCGCGAGGAC TTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTG CGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTC TACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCT TACTTTGTCCACACTCCGGGCCCCATGGTCTACGCCATCTGTTATTGTCCCCTGCCTCGCCTGGCAGATCTGGAGGCGCTGAAAGTGGCA GACTCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTG TCTCCAAACCTCATCTCTACCAGCATGCTTGGGCGGGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAG TATGCATTGGACCAGGGCGTGAACGTCACCCAGGTATTCGTGGACACCGTAGGGATGCCAGAGACATACCAGGCGCGGCTGCAGCAAAGT TTTCCCGGGATTGAGGTGACGGTCAAGGCCAAAGCAGATGCCCTCTACCCGGTGGTTAGTGCTGCCAGCATCTGTGCCAAGGTGGCCCGG GACCAGGCCGTGAAGAAATGGCAGTTCGTGGAGAAACTGCAGGACTTGGATACTGATTATGGCTCAGGCTACCCCAATGATCCCAAGACA AAAGCGTGGTTGAAGGAGCACGTGGAGCCTGTGTTCGGCTTCCCCCAGTTTGTCCGGTTCAGCTGGCGCACGGCCCAGACCATCCTGGAG AAAGAGGCGGAAGATGTTATATGGGAGGACTCAGCATCCGAGAATCAGGAGGGACTCAGGAAGATCACATCCTACTTCCTCAATGAAGGG TCCCAAGCCCGTCCCCGTTCTTCCCACCGATATTTCCTGGAACGCGGCCTGGAGTCAGCAACCAGCCTCTAGCAGCTGCCTCTACGCGCT CTACCTGCTTCCCCAACCCAGACATTAAAATTGTTTAAGGAGAACCACACGTAGGGGATGTACTTTTGGGACAGAAGCAAGGTGGGAGTG >58959_58959_8_NFIX-RNASEH2A_NFIX_chr19_13136366_ENST00000592199_RNASEH2A_chr19_12917821_ENST00000221486_length(amino acids)=443AA_BP=185 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFRED FVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA YFVHTPGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQ YALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKT -------------------------------------------------------------- |
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Fusion Gene PPI Analysis for NFIX-RNASEH2A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Related Drugs for NFIX-RNASEH2A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.8 2021-05-08) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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Related Diseases for NFIX-RNASEH2A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |